Complex networks and simple models in biology. (Q36539847)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849202%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

review article

1 reference

title

Complex networks and simple models in biology (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849202%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1

1 reference

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27 December 2019

author name string

Michael P H Stumpf

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849202%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

language of work or name

1 reference

1 December 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849202%20AND%20SRC:MED&resulttype=core&format=json

Journal of the Royal Society Interface

27 December 2019

published in

1 reference

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27 December 2019

volume

2

1 reference

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27 December 2019

issue

5

1 reference

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27 December 2019

page(s)

419-430

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849202%20AND%20SRC:MED&resulttype=core&format=json

An evolutionary and functional assessment of regulatory network motifs

27 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Evolutionary cores of domain co-occurrence networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Subnets of scale-free networks are not scale-free: sampling properties of networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Inferring network mechanisms: the Drosophila melanogaster protein interaction network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Conserved patterns of protein interaction in multiple species

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Discriminative topological features reveal biological network mechanisms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Local graph alignment and motif search in biological networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Evolutionary rate depends on number of protein-protein interactions independently of gene expression level: response

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Evolutionary rate depends on number of protein-protein interactions independently of gene expression level

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Superfamilies of evolved and designed networks.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Global mapping of the yeast genetic interaction network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

A map of the interactome network of the metazoan C. elegans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Unraveling protein interaction networks with near-optimal efficiency

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

A simple dependence between protein evolution rate and the number of protein-protein interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Computational analyses of high-throughput protein-protein interaction data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Topological structure analysis of the protein-protein interaction network in budding yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Network motifs: simple building blocks of complex networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Classification of scale-free networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Specificity and stability in topology of protein networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Evolutionary rate in the protein interaction network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Network motifs in the transcriptional regulation network of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Scale-free networks in biology: new insights into the fundamentals of evolution?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Spectra of “real-world” graphs: Beyond the semicircle law

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Random graphs with arbitrary degree distributions and their applications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Structure of Growing Networks with Preferential Linking

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Emergence of Scaling in Random Networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Collective dynamics of 'small-world' networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Sampling properties of random graphs: the degree distribution.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Spectral analysis of protein-protein interactions in Drosophila melanogaster.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Topological generalizations of network motifs.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Modeling interactome: scale-free or geometric?

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Functional and topological characterization of protein interaction networks

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Gaining confidence in high-throughput protein interaction networks

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Uncorrelated random networks.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Extremum statistics in scale-free network models.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Scaling and percolation in the small-world network model

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Inferring confidence sets of possibly misspecified gene trees.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Statistical ensemble of scale-free random graphs.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Highly expressed genes in yeast evolve slowly.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

Mean-field solution of the small-world network model.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1618496

The proteins of linked genes evolve at similar rates

21 September 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Clustering and preferential attachment in growing networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Scaling exponents and clustering coefficients of a growing random network

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Orthology, paralogy and proposed classification for paralog subtypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Correlated random networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

How the global structure of protein interaction networks evolves

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Centers of complex networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Properties of highly clustered networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Evolution of the yeast protein interaction network

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Molecular evolution in the yeast transcriptional regulation network

1 reference

https://pubmed.ncbi.nlm.nih.gov/16849202

12 December 2020

Identifiers

DOI

10.1098/RSIF.2005.0067

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849202%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849202%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

PubMed publication ID

16849202

1 reference