(Q38940313)

7 September 2017

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title

Evolution to the rescue: using comparative genomics to understand long non-coding RNAs (English)

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7 September 2017

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Igor Ulitsky

1

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7 September 2017

publication date

30 August 2016

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7 September 2017

published in

Nature Reviews Genetics

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7 September 2017

volume

17

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7 September 2017

issue

10

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7 September 2017

page(s)

601-614

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The landscape of long noncoding RNAs in the human transcriptome

7 September 2017

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Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity.

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Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice

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Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs

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Human long noncoding RNAs are substantially less folded than messenger RNAs

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A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails

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Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila

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Regulation of histone H4 Lys16 acetylation by predicted alternative secondary structures in roX noncoding RNAs

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Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

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2-D structure of the A region of Xist RNA and its implication for PRC2 association

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RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure

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Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

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A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells

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HOTAIR forms an intricate and modular secondary structure.

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Dealing with pervasive transcription.

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Divergent transcription: a driving force for new gene origination?

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Bidirectional promoters as important drivers for the emergence of species-specific transcripts

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Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor

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Cellular source and mechanisms of high transcriptome complexity in the mammalian testis

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The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

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Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks

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Function and evolution of local repeats in the Firre locus

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Circular RNAs are a large class of animal RNAs with regulatory potency

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Considerations when investigating lncRNA function in vivo.

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MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles

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CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis.

21 January 2018

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 January 2018

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Structural and functional differences in the long non-coding RNA hotair in mouse and human

21 January 2018

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Targeted disruption of Hotair leads to homeotic transformation and gene derepression

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Braveheart, a long noncoding RNA required for cardiovascular lineage commitment

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linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis

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Activity-dependent human brain coding/noncoding gene regulatory networks

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The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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Infernal 1.1: 100-fold faster RNA homology searches

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

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Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

21 January 2018

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Isoform diversity and regulation in peripheral and central neurons revealed through RNA-Seq

21 January 2018

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Detection of nonneutral substitution rates on mammalian phylogenies

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Human pluripotent stem cell-derived neural constructs for predicting neural toxicity

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Regulation of the ESC transcriptome by nuclear long noncoding RNAs

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Human XIST yeast artificial chromosome transgenes show partial X inactivation center function in mouse embryonic stem cells

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Identification of novel long noncoding RNAs underlying vertebrate cardiovascular development.

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A long non-coding RNA, LncMyoD, regulates skeletal muscle differentiation by blocking IMP2-mediated mRNA translation

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Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light.

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Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish.

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Neutral evolution of ‘non-coding’ complementary DNAs

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Evolution of the Long Non-coding RNAs MALAT1 and MENβ/ε

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.85

Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.85

Identification of long non-coding RNAs in insects genomes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.85

Functional conservation of the lncRNA NEAT1 in the ancestrally diverged marsupial lineage: Evidence for NEAT1 expression and associated paraspeckle assembly during late gestation in the opossum Monodelphis domestica

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.85

Human X inactivation center induces random X chromosome inactivation in male transgenic mice

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.85

Regulation of X-chromosome inactivation in development in mice and humans

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27573374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27573374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG.2016.85

1 reference

Dimensions Publication ID

7 September 2017

1042241451

0 references

1 reference