(Q34479474)

2 August 2017

title

Regulation of the ESC transcriptome by nuclear long noncoding RNAs (English)

1 reference

Mélanie A Eckersley-Maslin

2 August 2017

0 references

object named as

Mélanie A Eckersley-Maslin

3

0 references

David L. Spector

6

object named as

David L Spector

1 reference

2 August 2017

Jan H Bergmann

1

1 reference

2 August 2017

Jingjing Li

2

1 reference

2 August 2017

Frank Rigo

4

1 reference

2 August 2017

Susan M Freier

5

1 reference

2 August 2017

language of work or name

1 reference

5 June 2015

1 reference

2 August 2017

1 reference

2 August 2017

volume

25

1 reference

2 August 2017

issue

9

1 reference

2 August 2017

page(s)

1336-1346

1 reference

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

2 August 2017

cites work

1 reference

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

6 July 2018

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6 July 2018

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Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation

6 July 2018

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The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis

6 July 2018

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Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs

6 July 2018

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linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis

6 July 2018

1 reference

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

6 July 2018

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SOX2 co-occupies distal enhancer elements with distinct POU factors in ESCs and NPCs to specify cell state

6 July 2018

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The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse

6 July 2018

1 reference

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Epigenetic regulation by long noncoding RNAs

6 July 2018

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Control of somatic tissue differentiation by the long non-coding RNA TINCR.

6 July 2018

1 reference

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Transposable elements reveal a stem cell-specific class of long noncoding RNAs

6 July 2018

1 reference

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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

6 July 2018

1 reference

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Landscape of transcription in human cells

6 July 2018

1 reference

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6 July 2018

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Targeting nuclear RNA for in vivo correction of myotonic dystrophy

6 July 2018

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Embryonic stem cell potency fluctuates with endogenous retrovirus activity

6 July 2018

1 reference

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Genome regulation by long noncoding RNAs.

6 July 2018

1 reference

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Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

6 July 2018

1 reference

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Discovering pluripotency: 30 years of mouse embryonic stem cells

6 July 2018

1 reference

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

6 July 2018

1 reference

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lincRNAs act in the circuitry controlling pluripotency and differentiation

6 July 2018

1 reference

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GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets

6 July 2018

1 reference

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A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

6 July 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Widespread transcription at neuronal activity-regulated enhancers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Global survey of escape from X inactivation by RNA-sequencing in mouse

6 July 2018

1 reference

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Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

6 July 2018

1 reference

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Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Long noncoding RNAs: functional surprises from the RNA world

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

6 July 2018

1 reference

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

WGCNA: an R package for weighted correlation network analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

6 July 2018

1 reference

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

RNA maps reveal new RNA classes and a possible function for pervasive transcription

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Gene network interconnectedness and the generalized topological overlap measure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Dissecting self-renewal in stem cells with RNA interference

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Antisense transcription in the mammalian transcriptome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

The transcriptional landscape of the mammalian genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Niche-independent symmetrical self-renewal of a mammalian tissue stem cell

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Embryonic stem cell differentiation: emergence of a new era in biology and medicine

6 July 2018

1 reference

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The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina

6 July 2018

1 reference

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Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Reverse engineering of regulatory networks in human B cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Global identification of human transcribed sequences with genome tiling arrays

6 July 2018

1 reference

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A gene-coexpression network for global discovery of conserved genetic modules

6 July 2018

1 reference

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Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells

6 July 2018

1 reference

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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

6 July 2018

1 reference

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Large-scale transcriptional activity in chromosomes 21 and 22

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4561492

Functional discovery via a compendium of expression profiles

6 July 2018

1 reference

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Specific expression of a retinoic acid-regulated, zinc-finger gene, Rex-1, in preimplantation embryos, trophoblast and spermatocytes

6 July 2018

1 reference

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Network neighborhood analysis with the multi-node topological overlap measure

6 July 2018

1 reference

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Stage- and cell-specific expression of Dnmt3a and Dnmt3b during embryogenesis.

27 October 2018

1 reference

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mTert expression correlates with telomerase activity during the differentiation of murine embryonic stem cells.

27 October 2018

1 reference

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27 October 2018

Identifiers

DOI

10.1101/GR.189027.114

1 reference

2 August 2017

1 reference

2 August 2017

1 reference