(Q38915682)

7 September 2017

1 reference

title

Computational Resources for MHC Ligand Identification (English)

1 reference

7 September 2017

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Gisbert Schneider

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Christian P Koch

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Max Pillong

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

publication date

12 April 2013

1 reference

7 September 2017

published in

Molecular Informatics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

volume

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

page(s)

326-336

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

The origins of vertebrate adaptive immunity

11 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Alternative adaptive immunity in invertebrates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Clonal selection and learning in the antibody system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Lymphocytes as Models for the Study of Mammalian Cellular Differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Murine MHC polymorphism and T cell specificities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Genetics of the central MHC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Regulation of major histocompatibility complex class II genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

The relationship of the major murine histocompatibility region associated IA antigens to mitogen responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Crystal structure of an H-2Kb-ovalbumin peptide complex reveals the interplay of primary and secondary anchor positions in the major histocompatibility complex binding groove

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Crystal structure of a complete ternary complex of TCR, superantigen and peptide-MHC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Kinetics and thermodynamics of beta 2-microglobulin binding to the alpha 3 domain of major histocompatibility complex class I heavy chain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

MHC class I assembly: out and about

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

MHC polymorphism under host-pathogen coevolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

HLA class I supertypes: a revised and updated classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Peptides naturally presented by MHC class I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Regulation of MHC class II genes: lessons from a disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

T cell-dependent B cell activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

MHC II and the endocytic pathway: regulation by invariant chain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Structure and polymorphism of murine and human class II major histocompatibility antigens

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Immune epitope database analysis resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

The three-dimensional structure of peptide-MHC complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

SYFPEITHI: database for MHC ligands and peptide motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Computational immunology: The coming of age.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

A community resource benchmarking predictions of peptide binding to MHC-I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Prediction of promiscuous peptides that bind HLA class I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Prediction of binding to MHC class I molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Prediction of MHC class I binding peptides, using SVMHC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Design of MHC I stabilizing peptides by agent-based exploration of sequence space

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

A computer program for predicting possible cytotoxic T lymphocyte epitopes based on HLA class I peptide-binding motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Two complementary methods for predicting peptides binding major histocompatibility complex molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Predicting binding affinities of protein ligands from three-dimensional models: application to peptide binding to class I major histocompatibility proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Chemical Descriptors Are More Important Than Learning Algorithms for Modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

The immune epitope database 2.0.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

The immune epitope database and analysis resource: from vision to blueprint

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Weak binder for MHC molecule is a potent Mycobacterium tuberculosis-specific CTL epitope in the context of HLA-A24 allele

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Class II MHC quantitative binding motifs derived from a large molecular database with a versatile iterative stepwise discriminant analysis meta-algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Two novel T cell epitope prediction algorithms based on MHC-binding motifs; comparison of predicted and published epitopes from Mycobacterium tuberculosis and HIV protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Computational methods for prediction of T-cell epitopes--a framework for modelling, testing, and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Prediction of well-conserved HIV-1 ligands using a matrix-based algorithm, EpiMatrix.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Epitope scanning using virtual matrix-based algorithms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Application of an artificial neural network to predict specific class I MHC binding peptide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Specific and general HLA-DR binding motifs: comparison of algorithms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

MHC-BPS: MHC-binder prediction server for identifying peptides of flexible lengths from sequence-derived physicochemical properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

21 January 2018

Stacked generalization

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

NetMHCpan, a method for MHC class I binding prediction beyond humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

MetaMHC: a meta approach to predict peptides binding to MHC molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

A probabilistic meta-predictor for the MHC class II binding peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Efficient peptide-MHC-I binding prediction for alleles with few known binders.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Statistical Inference for Probabilistic Functions of Finite State Markov Chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Optimally-connected hidden markov models for predicting MHC-binding peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Additive method for the prediction of protein-peptide binding affinity. Application to the MHC class I molecule HLA-A*0201.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Decrypting the structure of major histocompatibility complex class I-restricted cytotoxic T lymphocyte epitopes with complex peptide libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Monte Carlo docking of oligopeptides to proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Toward computational determination of peptide-receptor structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Free energy mapping of class I MHC molecules and structural determination of bound peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Predicting peptide binding affinities to MHC molecules using a modified semi-empirical scoring function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Structure-derived potentials and protein simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Potential energy functions for threading

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Ranking potential binding peptides to MHC molecules by a computational threading approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

A structure-based algorithm to predict potential binding peptides to MHC molecules with hydrophobic binding pockets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

An efficient T-cell epitope discovery strategy using in silico prediction and the iTopia assay platform

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

High throughput T epitope mapping and vaccine development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Bridging the innate and adaptive immune systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

Toward the Quantitative Prediction of T-Cell Epitopes: CoMFA and CoMSIA Studies of Peptides with Affinity for the Class I MHC Molecule HLA-A*0201

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201300042

21 January 2018

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201300042

Customized versus universal scoring functions: application to class I MHC-peptide binding free energy predictions

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201300042

Expression of classical and non-classical MHC class I antigens in murine hair follicles.

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201300042

Recovery of known T-cell epitopes by computational scanning of a viral genome

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201300042

Molecular Dynamics Simulation of MHC-Peptide Complexes as a Tool for Predicting Potential T Cell Epitopes

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201300042

Ensemble-based classifiers

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201300042

8 April 2023

Identifiers

DOI

10.1002/MINF.201300042

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27481589%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference