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CTCF: master weaver of the genome
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scholarly article
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review article
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Europe PubMed Central
title
CTCF: master weaver of the genome
(English)
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author name string
Jennifer E Phillips
series ordinal
1
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Victor G Corces
series ordinal
2
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language of work or name
English
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publication date
26 June 2009
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published in
Cell
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volume
137
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issue
7
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page(s)
1194-211
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cites work
CTCF-dependent enhancer-blocking by alternative chromatin loop formation
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Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
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The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
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CTCF physically links cohesin to chromatin
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The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions
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Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci
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7 April 2017
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
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CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2
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CTCF binding and higher order chromatin structure of the H19 locus are maintained in mitotic chromatin
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Conserved CTCF insulator elements flank the mouse and human beta-globin loci
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The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation
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An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes
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Interchromosomal associations between alternatively expressed loci
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High-resolution profiling of histone methylations in the human genome
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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
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Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
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The third dimension of gene regulation: organization of dynamic chromatin loopscape by SATB1
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Nuclear organization of the genome and the potential for gene regulation
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7 April 2017
Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements
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7 April 2017
Insulators: exploiting transcriptional and epigenetic mechanisms
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7 April 2017
Interchromosomal interactions and olfactory receptor choice
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The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso
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Boundaries between chromosomal domains of X inactivation and escape bind CTCF and lack CpG methylation during early development
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7 April 2017
Role of CTCF binding sites in the Igf2/H19 imprinting control region
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CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
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7 April 2017
Looping and interaction between hypersensitive sites in the active beta-globin locus
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7 April 2017
Capturing chromosome conformation
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7 April 2017
CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease
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7 April 2017
CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
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7 April 2017
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
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7 April 2017
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators
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A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene
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Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development
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7 April 2017
CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
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7 April 2017
CTCF-dependent chromatin insulator is linked to epigenetic remodeling
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7 April 2017
Transgenic RNAi reveals essential function for CTCF in H19 gene imprinting
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PubMed Central
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7 April 2017
CTCF maintains differential methylation at the Igf2/H19 locus
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7 April 2017
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
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7 April 2017
Cohesins functionally associate with CTCF on mammalian chromosome arms
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7 April 2017
Cohesin mediates transcriptional insulation by CCCTC-binding factor
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7 April 2017
The mammalian epigenome
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7 April 2017
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
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27 September 2017
CTCF regulates cell cycle progression of alphabeta T cells in the thymus
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27 September 2017
The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription.
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27 September 2017
X chromosome dosage compensation: how mammals keep the balance
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27 September 2017
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data
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27 September 2017
CTCF regulates allelic expression of Igf2 by orchestrating a promoter-polycomb repressive complex 2 intrachromosomal loop
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27 September 2017
Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression
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27 September 2017
CCCTC-binding factor activates PARP-1 affecting DNA methylation machinery.
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27 September 2017
Higher order chromatin structure at the X-inactivation center via looping DNA.
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27 September 2017
The 3D structure of the immunoglobulin heavy-chain locus: implications for long-range genomic interactions.
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27 September 2017
Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription
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27 September 2017
Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
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27 September 2017
CTCF is the master organizer of domain-wide allele-specific chromatin at the H19/Igf2 imprinted region
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27 September 2017
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27 September 2017
We gather together: insulators and genome organization
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27 September 2017
Chromatin fine structure of the c-MYC insulator element/DNase I-hypersensitive site I is not preserved during mitosis.
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27 September 2017
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
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27 September 2017
Analysis of the H19ICR insulator
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27 September 2017
Beyond the sequence: cellular organization of genome function
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27 September 2017
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27 September 2017
CTCF interacts with and recruits the largest subunit of RNA polymerase II to CTCF target sites genome-wide
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27 September 2017
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.
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27 September 2017
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).
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27 September 2017
The human major histocompatibility complex class II HLA-DRB1 and HLA-DQA1 genes are separated by a CTCF-binding enhancer-blocking element
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27 September 2017
Differential methylation of Xite and CTCF sites in Tsix mirrors the pattern of X-inactivation choice in mice
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27 September 2017
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27 September 2017
CTCF regulates growth and erythroid differentiation of human myeloid leukemia cells.
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27 September 2017
Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.
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27 September 2017
Mutation of a single CTCF target site within the H19 imprinting control region leads to loss of Igf2 imprinting and complex patterns of de novo methylation upon maternal inheritance.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
The c-myc insulator element and matrix attachment regions define the c-myc chromosomal domain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
Thyroid hormone-regulated enhancer blocking: cooperation of CTCF and thyroid hormone receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
The nucleotides responsible for the direct physical contact between the chromatin insulator protein CTCF and the H19 imprinting control region manifest parent of origin-specific long-distance insulation and methylation-free domains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
Functional phosphorylation sites in the C-terminal region of the multivalent multifunctional transcriptional factor CTCF
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
Structural and functional conservation at the boundaries of the chicken beta-globin domain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
Negative protein 1, which is required for function of the chicken lysozyme gene silencer in conjunction with hormone receptors, is identical to the multivalent zinc finger repressor CTCF.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
Modular structure of a chicken lysozyme silencer: involvement of an unusual thyroid hormone receptor binding site
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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27 September 2017
Cutting edge: developmental stage-specific recruitment of cohesin to CTCF sites throughout immunoglobulin loci during B lymphocyte development
1 reference
stated in
PubMed Central
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30 May 2018
Flanking HS-62.5 and 3' HS1, and regions upstream of the LCR, are not required for beta-globin transcription
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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30 May 2018
Gene loops juxtapose promoters and terminators in yeast
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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30 May 2018
NeP1. A ubiquitous transcription factor synergizes with v-ERBA in transcriptional silencing
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PubMed Central
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30 May 2018
Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.
1 reference
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PubMed Central
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28 November 2018
Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
The three 'C' s of chromosome conformation capture: controls, controls, controls.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
CTCF elements direct allele-specific undermethylation at the imprinted H19 locus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
The beta-globin nuclear compartment in development and erythroid differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
A chromatin insulator determines the nuclear localization of DNA.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
Maternal-specific footprints at putative CTCF sites in the H19 imprinting control region give evidence for insulator function.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
Description and targeted deletion of 5' hypersensitive site 5 and 6 of the mouse beta-globin locus control region
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040116
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28 November 2018
CTCF binding sites promote transcription initiation and prevent DNA methylation on the maternal allele at the imprinted H19/Igf2 locus
1 reference
stated in
PubMed
reference URL
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Epigenetic regulation of the human retinoblastoma tumor suppressor gene promoter by CTCF
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19563753
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Local and cis effects of the H element on expression of odorant receptor genes in mouse
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19563753
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19563753
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.CELL.2009.06.001
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
995138
OpenCitations bibliographic resource ID
995138
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
995138
PMC publication ID
3040116
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
995138
PubMed publication ID
19563753
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
995138
ResearchGate publication ID
26327790
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