machine-readable file format for genomic library sequence and structure

Command-line program to download videos from YouTube.com and other video sites

All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

Biwhitened PCA

Toolkit for processing sequences in FASTA/Q formats

A fast lossless FASTQ compressor with ultra-high compression ratio

The most powerful and modular diffusion model GUI, api and backend with a graph/nodes interface.

Annotate 2D point clouds using overlay polygons

Functional Inference of Gene Regulation

Fast Wilcoxon and auROC

MOODS: Motif Occurrence Detection Suite

Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more

Learning embeddings for classification, retrieval and ranking.

Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer-target gene regulatory interactions

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Graph-linked unified embedding for single-cell multi-omics data integration

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

Structure learning based for zero-inflated negative binomial data

🔏 Opinionated, typographic-centric ggplot2 themes and theme components

Photo to sketch effects in R

Cromwell/WDL wrapper for Python

R package to easily generate "V-plots" of paired-end sequencing data over regions of interest

Enhancing {ggplot2} plots with statistical analysis 📊📣

An R package for analysis of curve data with phase and amplitude variation

BMO - a tool for predicting TF binding from ATAC-seq data

R Interface to the Better BiBTex Zotero Connector

View and Browse Code Using Flow Diagrams

Fast reading of delimited files