Statistics-driven benchmarking library for Rust

Package management made easy

Fast python twobit reader for local and remote files.

PAF (pairwise alignment format) validator based on extended CIGAR strings

Centromere mapping and annotation pipeline

Software for comparing genome assemblies and read datasets to a benchmark genome like the Q100 project's HG002v1.0.1

Structural variant discovery and genotyping from mapped PacBio HiFi data

somatic SV calling on matched tumor-normal co-assembly graphs

The user-friendly command line shell.

A high-performance BigWig and BigBed library in Rust

A Python package for aggregating and normalizing historical data from popular and free financial APIs.

Create book from markdown files. Like Gitbook but implemented in Rust

Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

Zenith - sort of like top or htop but with zoom-able charts, CPU, GPU, network, and disk usage

Blazing 💥 fast terminal-ui for git written in rust 🦀

A new type of shell

A modern alternative to ls

A terminal workspace with batteries included

Command line scientific data management tool

Empowering everyone to build reliable and efficient software.

Snakemake workflow management system and CLI generation tool

A Rust library and command line tool for working with genomic ranges and their data.

A battery of methylation tools for PacBio HiFi reads

Transformer-based sequence correction method for genome assembly polishing

vcfdist: Accurately benchmarking phased variant calls

A complete diploid human genome

A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.