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JAFFA Public
Forked from Oshlack/JAFFAJAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
C++ Other UpdatedAug 21, 2024 -
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amplicnv-pipeline Public
Snakemake workflow for CNV detection on exome data using ampliCNV
Python UpdatedApr 7, 2023 -
amplicnv Public
ampliCNV is a Python 3.x package for copy number (CNV) variation detection on whole exome sequencing (WES) data from amplicon-based enrichment technologies.
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rna-seq-star-deseq2 Public
Forked from bioruffo/rna-seq-star-deseq2RNA-seq workflow using STAR and DESeq2
Python MIT License UpdatedSep 7, 2021 -
bedhandler Public
A Python3.x package for handling bed/tsv files
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amplicnv-data Public
Scripts to generate stats data on exome and panel targets
Python UpdatedAug 12, 2021 -
CNV-detection-pipeline Public
Snakemake workflow for CNV detection on exome and custom target panel sequencing data
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