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UCSC
- Santa Cruz, CA, US
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SQLiteBioData Public
Build SqlLite3 database for NCBI dataset
Python MIT License UpdatedSep 30, 2024 -
duplicacy Public
Forked from gilbertchen/duplicacyA new generation cloud backup tool
Go Other UpdatedSep 28, 2024 -
kent Public
Forked from ucscGenomeBrowser/kentUCSC Genome Browser source tree. Stable branch: "beta".
C Other UpdatedSep 18, 2024 -
PrimerS-JuJu Public
Tools to assist with primer design
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flair Public
Forked from BrooksLabUCSC/flairFull-Length Alternative Isoform analysis of RNA
Python Other UpdatedSep 1, 2024 -
sonLib Public
Forked from ComparativeGenomicsToolkit/sonLibSmall general-purpose library for C and Python with an emphasis on bioinformatics.
C MIT License UpdatedAug 24, 2024 -
hal Public
Forked from ComparativeGenomicsToolkit/halHierarchical Alignment Format
C++ Other UpdatedAug 24, 2024 -
pipettor Public
robust, easy to use Python package for running Unix process pipelines
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intronProspector Public
Identify putative introns in RNA-Seq alignments
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awesome-pipeline Public
Forked from pditommaso/awesome-pipelineA curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
UpdatedJun 12, 2024 -
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LyRic Public
Forked from guigolab/LyRicLong RNA-seq analysis workflow
Python GNU General Public License v3.0 UpdatedMay 9, 2024 -
transMap Public
TransMap pipeline used to build cross-species tracks for UCSC browser
Python UpdatedApr 19, 2024 -
SQANTI3 Public
Forked from ConesaLab/SQANTI3Tool for the Quality Control of Long-Read Defined Transcriptomes
HTML GNU General Public License v3.0 UpdatedMar 27, 2024 -
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htslib Public
Forked from samtools/htslibC library for high-throughput sequencing data formats
C Other UpdatedFeb 14, 2024 -
cactus Public
Forked from ComparativeGenomicsToolkit/cactusGenome aligner based upon notion of Cactus graphs
C Other UpdatedDec 8, 2023 -
transcript-frame-tools Public
Various toos to validate exon frames and CDS in gene annotation (not generally useful)
Python MIT License UpdatedNov 28, 2023 -
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pyexiftool Public
Forked from sylikc/pyexiftoolPyExifTool (active PyPI project) - A Python library to communicate with an instance of Phil Harvey's ExifTool command-line application. Runs one process with special -stay_open flag, and pipes data…
Python Other UpdatedNov 26, 2023 -
miniprot Public
Forked from lh3/miniprotAlign proteins to genomes with splicing and frameshift
C MIT License UpdatedNov 24, 2023 -
t2t-primates-hub Public
Forked from ph09/t2t-primates-hubHub for the T2T Primates Project
UpdatedAug 31, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedAug 23, 2023 -
sqantiTools Public
Various tools to work with data from SQUANTI3
Python MIT License UpdatedAug 17, 2023 -
gencode-backmap Public
Mapping of GENCODE gene annotation set files to older assembies
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HPRC_Assembly_Hub Public
Forked from human-pangenomics/HPRC_Assembly_HubShell MIT License UpdatedApr 26, 2023 -
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paffy Public
Forked from ComparativeGenomicsToolkit/paffySmall C/CLI library of paf format tools used by Cactus
C UpdatedApr 3, 2023 -
T2T-CHM13-hub Public
Assembly hub for T2T CHRM13 assemblies