algorithm for finding local sequence alignments
from command line:
navigate to the src folder.
pass the FASTA files as arguments.
python align.py seq1 seq2
Results are saved to the results file.
GCTACGACTCAGCTCAGTGAGCTGCATGCCTTCAAGCTTCGGGTGGAT-CCTGCCAACTT
| | | | || | | || | | | | | | |
-CGCC-AATTTCA--AGAT-TC-T-GT-CCCAC-AACA--TCCTCGTGG--T-TCTGG-C
TAAGATC-CT--GGC-CCACAACATGATGTTGGTAATCGCCATGTACTTCCCTGGCGAGT
| | | | | | | | | | |||
CACTTTGT-TCCC-CG---CCG-AC--------TTCACT-C--CTG---A---GGCTCA-
TCACTCCAGAGGTCCACCTCTCAGTTG-ACAAGTTCCTTGCGTGCCTGGCTTTGGCTCTG
| | | | || | | | | | | |||||| |||| ||
TG-TTGC-----A--ATGGA-CAAGT-TCC----T-C-TCAGCT-CTGGCTCTGGCCATG
TCTGAGAAGTACCGCTAAA
|||||||||||| | ||||
TCTGAGAAGTACAGATAAA
Score: 142