GitHub - bwallin/thesis-code: Code from my M.Sc. thesis "Bayesian state-space model estimation of canopy height with next-generation space-borne LiDAR".

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Code from my M.Sc. thesis "Bayesian state-space model estimation of canopy height with next-generation space-borne LiDAR".

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Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
NOTES		NOTES
README		README
gibbs.py		gibbs.py
misc.py		misc.py
model_simulation_alpha.py		model_simulation_alpha.py
model_simulation_beta.py		model_simulation_beta.py
model_simulation_delta.py		model_simulation_delta.py
model_simulation_epsilon.py		model_simulation_epsilon.py
model_simulation_eta.py		model_simulation_eta.py
model_simulation_gamma.py		model_simulation_gamma.py
model_simulation_zeta.py		model_simulation_zeta.py
params_cedar2.py		params_cedar2.py
params_cedar4.py		params_cedar4.py
params_eta.py		params_eta.py
params_serc1.py		params_serc1.py
params_serc3.py		params_serc3.py
params_serc5.py		params_serc5.py
params_zeta.py		params_zeta.py
sampler.py		sampler.py
simulate_data.py		simulate_data.py
simulate_data_sw.py		simulate_data_sw.py
stats_util.py		stats_util.py
vis_data.py		vis_data.py
vis_lib.py		vis_lib.py
vis_results.py		vis_results.py
vis_results_sw.py		vis_results_sw.py
zeta_params.py		zeta_params.py

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======
Thesis
======

Code for M.Sc. Thesis "Bayesian state-space model estimation of canopy height with next-generation space-borne LiDAR"
Would like to rework someday as it is a bit of an unholy mess.

Dependencies
============
Python 2.7+
scipy
pylab
pykalman
pandas

Contents
========

Scripts
-------

sampler.py
    Main script to create and execute Gibbs sampler

multisampler.py
    Main script to create and execute Gibbs sampler (multiple in paralell)

simulate_data.py
    Script to generate data from model

vis_results.py
    Script to produce visualization of sampler results.

vis_data.py
    Script to produce visualization of data/simulation.

Modules
-------

gibbs.py
	Library containing Gibbs sampler and related classes

misc.py
    Miscellaneous functions

stats_util.py
    Some random variable classes and functions

model_simulation_*.py
    Model spec and FCPs for various simulation/models

model_simulation_eta.py
    Latest model specification (used in thesis)