Modular storage and efficient manipulation of spatial multimodal molecular data in Python

Tutorial material on the scientific Python ecosystem

A build-it-yourself AutoML Framework

Static plotting for spatialdata

Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Config files used to define parameters specific to compute environments at different Institutions

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

Hydra is a framework for elegantly configuring complex applications

2D / 3D web image, mesh, and point set viewer using itk-wasm and vtk.js

Our team work on Xenium data for the SpaceHack 2022

A command-line benchmarking tool

FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data

This repository contains the notebooks for the exercise sessions of the VIB Deep Learning for Biology workshop

OpenAPI Specification (OAS) for the Vatstack API.

A DSL for data-driven computational pipelines

Conda recipes for the bioconda channel.

Modified docker build package for building and deploying snowstorm and elasticsearch containers. Also contains examples of dockerized python ingest scripts for loading releases.

A JavaScript library to add search functionality to any Jekyll blog.