Table of Contents

August 2013; 23 (8)

Research

  • NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

    • Joseph D. Fleming,
    • Giulio Pavesi,
    • Paolo Benatti,
    • Carol Imbriano,
    • Roberto Mantovani,
    • and Kevin Struhl
    Genome Res. August 2013 23: 1195-1209; Published in Advance April 17, 2013, doi:10.1101/gr.148080.112

  • Enhancer transcripts mark active estrogen receptor binding sites

    • Nasun Hah,
    • Shino Murakami,
    • Anusha Nagari,
    • Charles G. Danko,
    • and W. Lee Kraus
    Genome Res. August 2013 23: 1210-1223; Published in Advance May 1, 2013, doi:10.1101/gr.152306.112

  • The genomic landscape of cohesin-associated chromatin interactions

    • Laura E. DeMare,
    • Jing Leng,
    • Justin Cotney,
    • Steven K. Reilly,
    • Jun Yin,
    • Richard Sarro,
    • and James P. Noonan
    Genome Res. August 2013 23: 1224-1234; Published in Advance May 23, 2013, doi:10.1101/gr.156570.113
    OPEN ACCESS ARTICLE

  • Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

    • Daniel F. Simola,
    • Lothar Wissler,
    • Greg Donahue,
    • Robert M. Waterhouse,
    • Martin Helmkampf,
    • Julien Roux,
    • Sanne Nygaard,
    • Karl M. Glastad,
    • Darren E. Hagen,
    • Lumi Viljakainen,
    • Justin T. Reese,
    • Brendan G. Hunt,
    • Dan Graur,
    • Eran Elhaik,
    • Evgenia V. Kriventseva,
    • Jiayu Wen,
    • Brian J. Parker,
    • Elizabeth Cash,
    • Eyal Privman,
    • Christopher P. Childers,
    • Monica C. Muñoz-Torres,
    • Jacobus J. Boomsma,
    • Erich Bornberg-Bauer,
    • Cameron R. Currie,
    • Christine G. Elsik,
    • Garret Suen,
    • Michael A.D. Goodisman,
    • Laurent Keller,
    • Jürgen Liebig,
    • Alan Rawls,
    • Danny Reinberg,
    • Chris D. Smith,
    • Chris R. Smith,
    • Neil Tsutsui,
    • Yannick Wurm,
    • Evgeny M. Zdobnov,
    • Shelley L. Berger,
    • and Jürgen Gadau
    Genome Res. August 2013 23: 1235-1247; Published in Advance May 1, 2013, doi:10.1101/gr.155408.113

  • Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies

    • Megan A. Supple,
    • Heather M. Hines,
    • Kanchon K. Dasmahapatra,
    • James J. Lewis,
    • Dahlia M. Nielsen,
    • Christine Lavoie,
    • David A. Ray,
    • Camilo Salazar,
    • W. Owen McMillan,
    • and Brian A. Counterman
    Genome Res. August 2013 23: 1248-1257; Published in Advance May 14, 2013, doi:10.1101/gr.150615.112

  • Competition between virus-derived and endogenous small RNAs regulates gene expression in Caenorhabditis elegans

    • Peter Sarkies,
    • Alyson Ashe,
    • Jérémie Le Pen,
    • Mikel A. McKie,
    • and Eric A. Miska
    Genome Res. August 2013 23: 1258-1270; Published in Advance June 28, 2013, doi:10.1101/gr.153296.112
    OPEN ACCESS ARTICLE

  • Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

    • Ronnie de Jonge,
    • Melvin D. Bolton,
    • Anja Kombrink,
    • Grardy C.M. van den Berg,
    • Koste A. Yadeta,
    • and Bart P.H.J. Thomma
    Genome Res. August 2013 23: 1271-1282; Published in Advance May 16, 2013, doi:10.1101/gr.152660.112
    OPEN ACCESS ARTICLE

Methods

  • Proteome-wide discovery of mislocated proteins in cancer

    • KiYoung Lee,
    • Kyunghee Byun,
    • Wonpyo Hong,
    • Han-Yu Chuang,
    • Chan-Gi Pack,
    • Enkhjargal Bayarsaikhan,
    • Sun Ha Paek,
    • Hyosil Kim,
    • Hye Young Shin,
    • Trey Ideker,
    • and Bonghee Lee
    Genome Res. August 2013 23: 1283-1294; Published in Advance May 14, 2013, doi:10.1101/gr.155499.113

  • Inferring chromatin-bound protein complexes from genome-wide binding assays

    • Eugenia G. Giannopoulou and
    • Olivier Elemento
    Genome Res. August 2013 23: 1295-1306; Published in Advance April 3, 2013, doi:10.1101/gr.149419.112
    OPEN ACCESS ARTICLE

  • Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers

    • Aleksander Jankowski,
    • Ewa Szczurek,
    • Ralf Jauch,
    • Jerzy Tiuryn,
    • and Shyam Prabhakar
    Genome Res. August 2013 23: 1307-1318; Published in Advance April 3, 2013, doi:10.1101/gr.154922.113
    OPEN ACCESS ARTICLE

  • Mapping functional transcription factor networks from gene expression data

    • Brian C. Haynes,
    • Ezekiel J. Maier,
    • Michael H. Kramer,
    • Patricia I. Wang,
    • Holly Brown,
    • and Michael R. Brent
    Genome Res. August 2013 23: 1319-1328; Published in Advance May 1, 2013, doi:10.1101/gr.150904.112

Resources

  • The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains

    • Toyoyuki Takada,
    • Toshinobu Ebata,
    • Hideki Noguchi,
    • Thomas M. Keane,
    • David J. Adams,
    • Takanori Narita,
    • Tadasu Shin-I,
    • Hironori Fujisawa,
    • Atsushi Toyoda,
    • Kuniya Abe,
    • Yuichi Obata,
    • Yoshiyuki Sakaki,
    • Kazuo Moriwaki,
    • Asao Fujiyama,
    • Yuji Kohara,
    • and Toshihiko Shiroishi
    Genome Res. August 2013 23: 1329-1338; Published in Advance April 19, 2013, doi:10.1101/gr.156497.113
    OPEN ACCESS ARTICLE

  • The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

    • Ron A.-J. Chen,
    • Thomas A. Down,
    • Przemyslaw Stempor,
    • Q. Brent Chen,
    • Thea A. Egelhofer,
    • LaDeana W. Hillier,
    • Tess E. Jeffers,
    • and Julie Ahringer
    Genome Res. August 2013 23: 1339-1347; Published in Advance April 2, 2013, doi:10.1101/gr.153668.112
    OPEN ACCESS ARTICLE

  • The transcription start site landscape of C. elegans

    • Taro Leo Saito,
    • Shin-ichi Hashimoto,
    • Sam Guoping Gu,
    • J. Jason Morton,
    • Michael Stadler,
    • Thomas Blumenthal,
    • Andrew Fire,
    • and Shinichi Morishita
    Genome Res. August 2013 23: 1348-1361; Published in Advance May 1, 2013, doi:10.1101/gr.151571.112
    OPEN ACCESS ARTICLE

Erratum

|

This Issue

August 2013; 23 (8)
Cover
  1. Research
  2. Methods
  3. Resources
  4. Erratum

Find articles in this issue containing these words:

Preprint Server



Current Issue

  1. July 2024, 34 (7)
  1. Current Issue
  1. Alert me to new issues of Genome Research