Rqc
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Rqc.
Quality Control Tool for High-Throughput Sequencing Data
Bioconductor version: 3.8
Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.
Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>
Maintainer: Welliton Souza <well309 at gmail.com>
citation("Rqc")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rqc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rqc")| Using Rqc | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, QualityControl, Sequencing, Software |
| Version | 1.16.2 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL (>= 2) |
| Depends | BiocParallel, ShortRead, ggplot2 |
| Imports | BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, digest, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles |
| System Requirements | |
| URL | https://github.com/labbcb/Rqc |
| Bug Reports | https://github.com/labbcb/Rqc/issues |
See More
| Suggests | testthat |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rqc_1.16.2.tar.gz |
| Windows Binary | Rqc_1.16.2.zip |
| Mac OS X 10.11 (El Capitan) | Rqc_1.16.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rqc |
| Source Repository (Developer Access) | git clone [email protected]:packages/Rqc |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rqc/ |
| Package Short Url | https://bioconductor.org/packages/Rqc/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |