MetID
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MetID.
Network-based prioritization of putative metabolite IDs
Bioconductor version: 3.8
This package uses an innovative network-based approach that will enhance our ability to determine the identities of significant ions detected by LC-MS.
Author: Zhenzhi Li <zzrickli at gmail.com>
Maintainer: Zhenzhi Li <zzrickli at gmail.com>
Citation (from within R, enter
citation("MetID")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetID")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetID")| Introduction to MetID | HTML | R Script |
| Reference Manual |
Details
| biocViews | AssayDomain, BiologicalQuestion, Infrastructure, KEGG, Network, ResearchField, Software, StatisticalMethod, Technology, WorkflowStep |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5) |
| Imports | utils (>= 3.3.1), stats (>= 3.4.2), devtools (>= 1.13.0), stringr (>= 1.3.0), Matrix (>= 1.2-12), igraph (>= 1.2.1), ChemmineR(>= 2.30.2) |
| System Requirements | |
| URL | https://github.com/ressomlab/MetID |
See More
| Suggests | knitr (>= 1.19), rmarkdown (>= 1.8) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetID_1.0.0.tar.gz |
| Windows Binary | MetID_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | MetID_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetID |
| Source Repository (Developer Access) | git clone [email protected]:packages/MetID |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetID/ |
| Package Short Url | https://bioconductor.org/packages/MetID/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |