To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("anota")
In most cases, you don't need to download the package archive at all.
anota
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ANalysis Of Translational Activity (ANOTA).
Bioconductor version: Release (3.5)
Genome wide studies of translational control is emerging as a tool to study verious biological conditions. The output from such analysis is both the mRNA level (e.g. cytosolic mRNA level) and the levl of mRNA actively involved in translation (the actively translating mRNA level) for each mRNA. The standard analysis of such data strives towards identifying differential translational between two or more sample classes - i.e. differences in actively translated mRNA levels that are independent of underlying differences in cytosolic mRNA levels. This package allows for such analysis using partial variances and the random variance model. As 10s of thousands of mRNAs are analyzed in parallell the library performs a number of tests to assure that the data set is suitable for such analysis.
Author: Ola Larsson <ola.larsson at ki.se>, Nahum Sonenberg <nahum.sonenberg at mcgill.ca>, Robert Nadon <robert.nadon at mcgill.ca>
Maintainer: Ola Larsson <ola.larsson at ki.se>
Citation (from within R,
enter citation("anota")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("anota")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("anota")
| R Script | ANalysis Of Translational Activity (anota) | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Sequencing, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (6.5 years) |
| License | GPL-3 |
| Depends | qvalue |
| Imports | multtest, qvalue |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | tRanslatome |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | anota_1.24.0.tar.gz |
| Windows Binary | anota_1.24.0.zip |
| Mac OS X 10.11 (El Capitan) | anota_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/anota |
| Package Short Url | http://bioconductor.org/packages/anota/ |
| Package Downloads Report | Download Stats |
Documentation »
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