nanotubes

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see nanotubes.

Mouse nanotube CAGE data

Bioconductor version: 3.15

Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).

Author: Malte Thodberg

Maintainer: Malte Thodberg <maltethodberg at gmail.com>

Citation (from within R, enter citation("nanotubes")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nanotubes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nanotubes")

nanotubes	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExpressionData, SequencingData
Version	1.12.0
License	GPL-3
Depends	R (>= 3.6)
Imports
System Requirements
URL	https://github.com/MalteThodberg/nanotubes
Bug Reports	https://github.com/MalteThodberg/nanotubes/issues

Suggests	knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR
Linking To
Enhances
Depends On Me	CAGEWorkflow
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nanotubes_1.12.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/nanotubes
Source Repository (Developer Access)	git clone [email protected]:packages/nanotubes
Package Short Url	https://bioconductor.org/packages/nanotubes/
Package Downloads Report	Download Stats