Subclassification and biochemical analysis of plant papain-like cysteine proteases displays subfamily-specific characteristics. (Q34174553)

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24 January 2020

title

Subclassification and biochemical analysis of plant papain-like cysteine proteases displays subfamily-specific characteristics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22371507%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

3

1 reference

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24 January 2020

Renier van der Hoorn

10

1 reference

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24 January 2020

9

Matthew Bogyo

1 reference

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24 January 2020

8

Hermen S Overkleeft

1 reference

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24 January 2020

author name string

Kerstin H Richau

1

1 reference

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24 January 2020

Farnusch Kaschani

2

1 reference

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24 January 2020

Twinkal C Pansuriya

4

1 reference

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24 January 2020

Sherry Niessen

5

1 reference

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24 January 2020

Kurt Stüber

6

1 reference

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24 January 2020

Tom Colby

7

1 reference

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24 January 2020

language of work or name

English

0 references

publication date

27 February 2012

1 reference

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24 January 2020

number of pages

17

1 reference

based on heuristic

inferred from page(s)

published in

Plant Physiology

1 reference

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24 January 2020

volume

158

1 reference

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24 January 2020

issue

4

1 reference

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24 January 2020

page(s)

1583-1599

1 reference

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Quantitative reactivity profiling predicts functional cysteines in proteomes

24 January 2020

cites work

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An effector-targeted protease contributes to defense against Phytophthora infestans and is under diversifying selection in natural hosts.

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Two-step labeling of endogenous enzymatic activities by Diels-Alder ligation

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Arabidopsis AtSerpin1, crystal structure and in vivo interaction with its target protease RESPONSIVE TO DESICCATION-21 (RD21)

28 October 2018

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Proteasome activity profiling: a simple, robust and versatile method revealing subunit-selective inhibitors and cytoplasmic, defense-induced proteasome activities

28 October 2018

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Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes

28 October 2018

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The Pfam protein families database

28 October 2018

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MEROPS: the peptidase database

28 October 2018

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The granulin gene family: from cancer to dementia

28 October 2018

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

28 October 2018

1 reference

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Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence.

28 October 2018

1 reference

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Apoplastic effectors secreted by two unrelated eukaryotic plant pathogens target the tomato defense protease Rcr3

28 October 2018

1 reference

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Diversity of serine hydrolase activities of unchallenged and botrytis-infected Arabidopsis thaliana

28 October 2018

1 reference

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Minitags for small molecules: detecting targets of reactive small molecules in living plant tissues using 'click chemistry'.

28 October 2018

1 reference

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Effector proteins of the bacterial pathogen Pseudomonas syringae alter the extracellular proteome of the host plant, Arabidopsis thaliana.

28 October 2018

1 reference

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RD19, an Arabidopsis cysteine protease required for RRS1-R-mediated resistance, is relocalized to the nucleus by the Ralstonia solanacearum PopP2 effector.

28 October 2018

1 reference

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Beta-lactone probes identify a papain-like peptide ligase in Arabidopsis thaliana.

28 October 2018

1 reference

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The Cladosporium fulvum virulence protein Avr2 inhibits host proteases required for basal defense.

28 October 2018

1 reference

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The origin and evolution of plant cystatins and their target cysteine proteinases indicate a complex functional relationship

28 October 2018

1 reference

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Azido-BODIPY acid reveals quantitative Staudinger-Bertozzi ligation in two-step activity-based proteasome profiling

28 October 2018

1 reference

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Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

Fungal effector protein AVR2 targets diversifying defense-related cys proteases of tomato

28 October 2018

1 reference

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Structure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities

28 October 2018

1 reference

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Plant proteases: from phenotypes to molecular mechanisms.

28 October 2018

1 reference

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Structural insights into the substrate specificity and activity of ervatamins, the papain-like cysteine proteases from a tropical plant, Ervatamia coronaria

28 October 2018

1 reference

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Clustal W and Clustal X version 2.0

28 October 2018

1 reference

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Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

28 October 2018

1 reference

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Locating proteins in the cell using TargetP, SignalP and related tools

28 October 2018

1 reference

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Vacuolar cysteine proteases of wheat (Triticum aestivum L.) are common to leaf senescence induced by different factors

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

Protease gene families in Populus and Arabidopsis

28 October 2018

1 reference

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The TIGR Plant Transcript Assemblies database

28 October 2018

1 reference

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A Phytophthora infestans cystatin-like protein targets a novel tomato papain-like apoplastic protease

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

TreeDyn: towards dynamic graphics and annotations for analyses of trees

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

Heterologous expression, purification, refolding, and structural-functional characterization of EP-B2, a self-activating barley cysteine endoprotease

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

Cladosporium Avr2 inhibits tomato Rcr3 protease required for Cf-2-dependent disease resistance.

28 October 2018

1 reference

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Senescence-associated vacuoles with intense proteolytic activity develop in leaves of Arabidopsis and soybean

28 October 2018

1 reference

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Structure-function analysis of cf-9, a receptor-like protein with extracytoplasmic leucine-rich repeats

28 October 2018

1 reference

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Ricinosomes and endosperm transfer cell structure in programmed cell death of the nucellus during Ricinus seed development

28 October 2018

1 reference

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Activity profiling of papain-like cysteine proteases in plants

28 October 2018

1 reference

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The 2.0 A crystal structure and substrate specificity of the KDEL-tailed cysteine endopeptidase functioning in programmed cell death of Ricinus communis endosperm

28 October 2018

1 reference

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An ER-localized form of PV72, a seed-specific vacuolar sorting receptor, interferes the transport of an NPIR-containing proteinase in Arabidopsis leaves.

28 October 2018

1 reference

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Papain protects papaya trees from herbivorous insects: role of cysteine proteases in latex

28 October 2018

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The S8 serine, C1A cysteine and A1 aspartic protease families in Arabidopsis

28 October 2018

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Phylogeny for the faint of heart: a tutorial.

28 October 2018

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Genetic modification removes an immunodominant allergen from soybean

28 October 2018

1 reference

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Retracted: An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus

28 October 2018

1 reference

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Small molecule affinity fingerprinting. A tool for enzyme family subclassification, target identification, and inhibitor design

28 October 2018

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A tomato cysteine protease required for Cf-2-dependent disease resistance and suppression of autonecrosis

28 October 2018

1 reference

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The Arabidopsis xylem peptidase XCP1 is a tracheary element vacuolar protein that may be a papain ortholog

28 October 2018

1 reference

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A slow maturation of a cysteine protease with a granulin domain in the vacuoles of senescing Arabidopsis leaves

28 October 2018

1 reference

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Lysosomal cysteine proteases: facts and opportunities

28 October 2018

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A peptide derived from the C-terminal part of a plant cysteine protease folds into a stack of two beta-hairpins, a scaffold present in the emerging family of granulin-like growth factors

28 October 2018

1 reference

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Global analysis of proteasomal substrate specificity using positional-scanning libraries of covalent inhibitors.

28 October 2018

1 reference

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Epoxide electrophiles as activity-dependent cysteine protease profiling and discovery tools

28 October 2018

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A unique 33-kD cysteine proteinase accumulates in response to larval feeding in maize genotypes resistant to fall armyworm and other Lepidoptera

28 October 2018

1 reference

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The plant vacuolar sorting receptor AtELP is involved in transport of NH(2)-terminal propeptide-containing vacuolar proteins in Arabidopsis thaliana.

28 October 2018

1 reference

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Agroinfiltration is a versatile tool that facilitates comparative analyses of Avr9/Cf-9-induced and Avr4/Cf-4-induced necrosis

28 October 2018

1 reference

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Identification of a promoter region responsible for the senescence-specific expression of SAG12.

28 October 2018

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Programmed cell death in castor bean endosperm is associated with the accumulation and release of a cysteine endopeptidase from ricinosomes

28 October 2018

1 reference

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Induction of defense-related responses in Cf9 tomato cells by the AVR9 elicitor peptide of cladosporium fulvum is developmentally regulated

28 October 2018

1 reference

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Structure of chymopapain at 1.7 A resolution

28 October 2018

1 reference

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Crystal structure of a caricain D158E mutant in complex with E-64

28 October 2018

1 reference

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Two distinct gene subfamilies within the family of cysteine protease genes

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

Peptide libraries: determination of relative reaction rates of protected amino acids in competitive couplings

28 October 2018

1 reference

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Crystal structure of cathepsin B inhibited with CA030 at 2.0-A resolution: A basis for the design of specific epoxysuccinyl inhibitors

28 October 2018

1 reference

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28 October 2018

1 reference

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Basic local alignment search tool

28 October 2018

1 reference

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Crystal structure of an actinidin-E-64 complex

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

Proaleurain vacuolar targeting is mediated by short contiguous peptide interactions

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

Crystal structure of papain-E64-c complex. Binding diversity of E64-c to papain S2 and S3 subsites

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

Involvement of cathepsin B in the plant disease resistance hypersensitive response

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320171

A protease activity-depleted environment for heterologous proteins migrating towards the leaf cell apoplast

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22371507

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1104/PP.112.194001

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22371507%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

PMC publication ID

3320171

0 references

1 reference