A computational approach to modeling nucleic acid hairpin structures (Q33916902)

30 July 2017

title

A computational approach to modeling nucleic acid hairpin structures (English)

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30 July 2017

Tung CS

1

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30 July 2017

language of work or name

English

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publication date

1 February 1997

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30 July 2017

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30 July 2017

volume

72

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30 July 2017

issue

2 Pt 1

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30 July 2017

page(s)

876-885

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Structural prediction of A- and B-DNA duplexes based on coordinates of the phosphorus atoms

30 July 2017

cites work

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Theoretical predictions of DNA hairpin loop conformations: correlations with thermodynamic and spectroscopic data

5 July 2018

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High-resolution NMR study of a synthetic oligoribonucleotide with a tetranucleotide GAGA loop that is a substrate for the cytotoxic protein, ricin

5 July 2018

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Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: an extraordinarily stable structure resistant to nucleases and heat

5 July 2018

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Molecular modelling of the 3-D structure of RNA tetraloops with different nucleotide sequences

5 July 2018

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Structure of a small RNA hairpin

5 July 2018

1 reference

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Solution structure of a DNA hairpin and its disulfide cross-linked analog

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185611

RNA structure at high resolution

5 July 2018

1 reference

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Statistical mechanics of the B----Z transition of DNA: contribution of diffuse ionic interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185611

A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes

5 July 2018

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X-ray structure of a DNA hairpin molecule

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185611

HIV-1 tat trans-activation requires the loop sequence within tar.

5 July 2018

1 reference

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The cytotoxins alpha-sarcin and ricin retain their specificity when tested on a synthetic oligoribonucleotide (35-mer) that mimics a region of 28 S ribosomal ribonucleic acid.

5 July 2018

1 reference

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RNA binding site of R17 coat protein

5 July 2018

1 reference

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A rigorous basepair oriented description of DNA structures

5 July 2018

1 reference

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CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes

5 July 2018

1 reference

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Feedback regulation of the rplJL-rpoBC ribosomal protein operon of Escherichia coli requires a region of mRNA secondary structure.

5 July 2018

1 reference

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Autogenous control of the S10 ribosomal protein operon of Escherichia coli: genetic dissection of transcriptional and posttranscriptional regulation

5 July 2018

1 reference

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Target site of Escherichia coli ribosomal protein S15 on its messenger RNA. Conformation and interaction with the protein

5 July 2018

1 reference

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Structural requirements of iron-responsive elements for binding of the protein involved in both transferrin receptor and ferritin mRNA post-transcriptional regulation

5 July 2018

1 reference

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Determinants of the interaction between the iron-responsive element-binding protein and its binding site in rat L-ferritin mRNA.

5 July 2018

1 reference

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Specific interaction between RNA phage coat proteins and RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185611

Conformational feasibility of a hairpin with two purines in the loop. 5'-d-GGTACIAGTACC-3'.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185611

The solution structure of a DNA hairpin containing a loop of three thymidines determined by nuclear magnetic resonance and molecular mechanics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185611

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185611

The Protein Data Bank: a computer-based archival file for macromolecular structures

5 July 2018

1 reference

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Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement

5 July 2018

1 reference

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Interactions of molecules with nucleic acids. I. An algorithm to generate nucleic acid structures with an application to the B-DNA structure and a counterclockwise helix

5 July 2018

1 reference

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A Monte Carlo method for generating structures of short single-stranded DNA sequences.

5 July 2018

1 reference

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Specific RNA binding by Q beta coat protein

29 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Definitions and nomenclature of nucleic acid structure parameters

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Nucleic acid model building: the multiple backbone solutions associated with a given base morphology

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Two-dimensional NMR and restrained molecular dynamics studies of the hairpin d(T8C4A8): detection of an extraloop cytosine

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Conformational studies of hairpin sequences from the ColE1 cruciform

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Crystal structure of an RNA bacteriophage coat protein–operator complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

An extension of the rigorous base-unit oriented description of nucleic acid structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Spatial configurations of polynucleotide chains. I. Steric interactions in polyribonucleotides: A virtual bond model

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

Crystallographic refinement of yeast phenylalanine transfer RNA at 2-5A resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/9017213

12 December 2020

10.1016/S0006-3495(97)78722-8

Identifiers

DOI

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30 July 2017

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30 July 2017

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