MODOMICS: a database of RNA modification pathways--2013 update (Q28278502)

9

Stanislaw Dunin-Horkawicz

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Kaja Milanowska-Zabel

Kaja Milanowska

2

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Mark Helm

Mark Helm

11

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Elzbieta Purta

4

Elzbieta Purta

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Henri Grosjean

13

Henri Grosjean

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Magdalena A Machnicka

1

Magdalena A Machnicka

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Małgorzata Kurkowska

5

Malgorzata Kurkowska

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author name string

Okan Osman Oglou

3

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Anna Olchowik

6

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Witold Januszewski

7

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Sebastian Kalinowski

8

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Kristian M Rother

Creative Commons Attribution-NonCommercial 3.0 Unported

10

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language of work or name

English

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publication date

January 2013

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published in

Nucleic Acids Research

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volume

41

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issue

Database issue

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page(s)

D262-7

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copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Identification of 8-methyladenosine as the modification catalyzed by the radical SAM methyltransferase Cfr that confers antibiotic resistance in bacteria

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The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema

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The Small Subunit rRNA Modification Database

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A single methyltransferase YefA (RlmCD) catalyses both m5U747 and m5U1939 modifications in Bacillus subtilis 23S rRNA

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TLR13 recognizes bacterial 23S rRNA devoid of erythromycin resistance-forming modification

20 March 2017

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A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA

20 March 2017

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Identification of modifications in microbial, native tRNA that suppress immunostimulatory activity

29 September 2017

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The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA.

29 September 2017

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3-(3-amino-3-carboxypropyl)-5,6-dihydrouridine is one of two novel post-transcriptional modifications in tRNALys(UUU) from Trypanosoma brucei.

29 September 2017

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Hen1 is required for oocyte development and piRNA stability in zebrafish.

29 September 2017

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RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage

29 September 2017

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Cytoscape Web: an interactive web-based network browser

29 September 2017

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New archaeal methyltransferases forming 1-methyladenosine or 1-methyladenosine and 1-methylguanosine at position 9 of tRNA.

29 September 2017

1 reference

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Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.

29 September 2017

1 reference

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YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

MODOMICS: a database of RNA modification pathways. 2008 update

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

An embarrassment of riches: the enzymology of RNA modification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

The HGNC Database in 2008: a resource for the human genome

29 September 2017

1 reference

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Reaction in alphavirus mRNA capping: formation of a covalent complex of nonstructural protein nsP1 with 7-methyl-GMP.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Systems-Based Analysis of Modified tRNA Bases

27 November 2018

1 reference

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Identification of 5-hydroxycytidine at position 2501 concludes characterization of modified nucleotides in E. coli 23S rRNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Creating a buzz about insect genomes.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

The 3D rRNA modification maps database: with interactive tools for ribosome analysis

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

27 November 2018

Identifiers

DOI

10.1093/NAR/GKS1007

1 reference

journals/nar/MachnickaMOPKOJKDRHBG13

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

23118484

1 reference