240-301, Computer Engineering Lab III (Software) Semester 1, 2006-2007

Pattern Matching
Dr. Andrew Davison WiG Lab (teachers room), CoE
[email protected]

T:
P:

a a

b b a

a a b

c c a

a a
4

a
1

b
3 2

b
1

240-301 Comp. Eng. Lab III (Software), Pattern Matching

Overview
1. 2. 3. 4. 5. What is Pattern Matching? The Brute Force Algorithm The Boyer-Moore Algorithm The Knuth-Morris-Pratt Algorithm More Information

240-301 Comp. Eng. Lab III (Software), Pattern Matching

1. What is Pattern Matching?

Definition:

given a text string T and a pattern string P, find the pattern inside the text
T:

the rain in spain stays mainly on the plain P: n th Applications:

text editors, Web search engines (e.g. Google), image analysis

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String Concepts
Assume A

S is a string of size m.

substring S[i .. j] of S is the string fragment between indexes i and j.

prefix of S is a substring S[0 .. i] A suffix of S is a substring S[i .. m-1]

i is any index between 0 and m-1
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Examples
Substring

a n d r e w
0 5

S[1..3] == "ndr"

All

possible prefixes of S:

"andrew", "andre", "andr", "and", "an, "a"

All

possible suffixes of S:

"andrew", "ndrew", "drew", "rew", "ew", "w"

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2. The Brute Force Algorithm

Check

each position in the text T to see if the pattern P starts in that position

T: a n d r e w P: r e w

T: a n d r e w P: r e w

P moves 1 char at a time through T

....
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Brute Force in Java

Return index where pattern starts, or -1

public static int brute(String text,String pattern) { int n = text.length(); // n is length of text int m = pattern.length(); // m is length of pattern int j; for(int i=0; i <= (n-m); i++) { j = 0; while ((j < m) && (text.charAt(i+j) == pattern.charAt(j)) ) j++; if (j == m) return i; // match at i } return -1; // no match } // end of brute()
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Usage
public static void main(String args[]) { if (args.length != 2) { System.out.println("Usage: java BruteSearch <text> <pattern>"); System.exit(0); } System.out.println("Text: " + args[0]); System.out.println("Pattern: " + args[1]); int posn = brute(args[0], args[1]); if (posn == -1) System.out.println("Pattern not found"); else System.out.println("Pattern starts at posn " + posn); }
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Analysis
Brute

force pattern matching runs in time O(mn) in the worst case. most searches of ordinary text take O(m+n), which is very quick.

But

240-301 Comp. Eng. Lab III (Software), Pattern Matching

continued

 The

brute force algorithm is fast when the alphabet of the text is large
e.g. A..Z, a..z, 1..9, etc.

It

is slower when the alphabet is small

e.g. 0, 1 (as in binary files, image files, etc.)

240-301 Comp. Eng. Lab III (Software), Pattern Matching

continued

10

 Example

of a worst case:

T: "aaaaaaaaaaaaaaaaaaaaaaaaaah" P: "aaah"
Example

of a more average case:

T: "a string searching example is standard" P: "store"

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3. The Boyer-Moore Algorithm

The

Boyer-Moore pattern matching algorithm is based on two techniques.

The looking-glass technique

1.

find P in T by moving backwards through P, starting at its end

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 2.

The character-jump technique

when a mismatch occurs at T[i] == x the character in pattern P[j] is not the same as T[i]

There are 3 possible cases, tried in order.

x a i

ba j

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Case 1
If

P contains x somewhere, then try to shift P right to align the last occurrence of x in P with T[i].
x a i

T
and move i and j right, so j at end

x a ? ? inew

x c ba j

x c ba jnew
14

240-301 Comp. Eng. Lab III (Software), Pattern Matching

Case 2
If

P contains x somewhere, but a shift right to the last occurrence is not possible, then shift P right by 1 character to T[i+1].
x a x i

T
and move i and j right, so j at end

xa x ? inew

cw ax j

x is after 240-301 Comp. Eng. Labj position Matching III (Software), Pattern

cw ax jnew
15

Case 3
If

cases 1 and 2 do not apply, then shift P to align P[0] with T[i+1]. T
and move i and j right, so j at end

x a i

x a ? ?? inew

P d c ba
No x in P j

P d c ba
0 jnew
16

240-301 Comp. Eng. Lab III (Software), Pattern Matching

Boyer-Moore Example (1)

T:
a p a t 1 t h m 2 t h m t e r n m a t c h i n g 3 t h m 4 t h m a l g o r i 5 t h m t h m r i r i r i 11 10 9 8 7 r i t h m 6 t h m

P:
r i

r i

r i

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Last Occurrence Function

Boyer-Moores

algorithm preprocesses the pattern P and the alphabet A to build a last occurrence function L()
L() maps all the letters in A to integers

L(x)

is defined as:

// x is a letter in A

the largest index i such that P[i] == x, or -1 if no such index exists

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L() Example
P a b a c a b
A

= {a, b, c, d} P: "abacab"
x L(x) a 4 b 5

0 1 2 3 4 5

c 3

d -1

L() stores indexes into P[]

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Note
In

Boyer-Moore code, L() is calculated when the pattern P is read in. L() is stored as an array

Usually

something like the table in the previous slide

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Boyer-Moore Example (2)

T: P:
a a b b a a a b a c c a b a a a
4

a
1

b
3 2 13 12 11 10 9 8

c a b

a c a

b
5

a b
6

b a

a c

c a

a
7

a c

a b

x L(x)
240-301 Comp. Eng. Lab III (Software), Pattern Matching

a 4

b 5

c 3

d -1
21

Boyer-Moore in Java

Return index where pattern starts, or -1

public static int bmMatch(String text, String pattern) { int last[] = buildLast(pattern); int n = text.length(); int m = pattern.length(); int i = m-1; if (i > n-1) return -1; // no match if pattern is // longer than text :

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int j = m-1; do { if (pattern.charAt(j) == text.charAt(i)) if (j == 0) return i; // match else { // looking-glass technique i--; j--; } else { // character jump technique int lo = last[text.charAt(i)]; //last occ i = i + m - Math.min(j, 1+lo); j = m - 1; } } while (i <= n-1);
return -1; // no match } // end of bmMatch()
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public static int[] buildLast(String pattern) /* Return array storing index of last occurrence of each ASCII char in pattern. */ { int last[] = new int[128]; // ASCII char set for(int i=0; i < 128; i++) last[i] = -1; // initialize array for (int i = 0; i < pattern.length(); i++) last[pattern.charAt(i)] = i; return last; } // end of buildLast()

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Usage
public static void main(String args[]) { if (args.length != 2) { System.out.println("Usage: java BmSearch <text> <pattern>"); System.exit(0); } System.out.println("Text: " + args[0]); System.out.println("Pattern: " + args[1]); int posn = bmMatch(args[0], args[1]); if (posn == -1) System.out.println("Pattern not found"); else System.out.println("Pattern starts at posn " + posn); }
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Analysis
Boyer-Moore

worst case running time is

O(nm + A)
But,

Boyer-Moore is fast when the alphabet (A) is large, slow when the alphabet is small.
e.g. good for English text, poor for binary

Boyer-Moore

is significantly faster than brute force for searching English text.

26

240-301 Comp. Eng. Lab III (Software), Pattern Matching

Worst Case Example

T:

"aaaaaa" P: "baaaaa"

T: a a a a a a a a a
6 5 4 3 2 9 1 8 7

P: b a a a a a
12 11 10

a b

a a b

a a a

a a a

a a a a a a
27

18 17 16 15 14 13 24 23 22 21 20 19

240-301 Comp. Eng. Lab III (Software), Pattern Matching

4. The KMP Algorithm

The

Knuth-Morris-Pratt (KMP) algorithm looks for the pattern in the text in a left-toright order (like the brute force algorithm).
it shifts the pattern more intelligently than the brute force algorithm.

But

240-301 Comp. Eng. Lab III (Software), Pattern Matching

continued

28

 If

a mismatch occurs between the text and pattern P at P[j], what is the most we can shift the pattern to avoid wasteful comparisons?
the largest prefix of P[0 .. j-1] that is a suffix of P[1 .. j-1]
29

Answer:

240-301 Comp. Eng. Lab III (Software), Pattern Matching

Example
T: P:

j=5
jnew = 2

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30

Why
j == 5
Find

largest prefix (start) of: "a b a a b" ( P[0..j-1] )

which is suffix (end) of: "b a a b" ( p[1 .. j-1] )

Answer:

"a b" Set j = 2 // the new j value

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KMP Failure Function

KMP

preprocesses the pattern to find matches of prefixes of the pattern with the pattern itself. j = mismatch position in P[] k = position before the mismatch (k = j-1). The failure function F(k) is defined as the size of the largest prefix of P[0..k] that is also a suffix of P[1..k].
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Failure Function Example

(k == j-1)
P:

"abaaba"

j k
F(k) F(j)

0 0

1 0

2 1

3 1

4 2

j: 012345

F(k) is the size of the largest prefix.

In

code, F() is represented by an array, like the table.

33

240-301 Comp. Eng. Lab III (Software), Pattern Matching

Why is F(4) == 2?
F(4)

P: "abaaba"

means

find the size of the largest prefix of P[0..4] that is also a suffix of P[1..4] = find the size largest prefix of "abaab" that is also a suffix of "baab" = find the size of "ab" =2

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Using the Failure Function

Knuth-Morris-Pratts

algorithm modifies the brute-force algorithm.

if a mismatch occurs at P[j] (i.e. P[j] != T[i]), then k = j-1; j = F(k); // obtain the new j

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KMP in Java

Return index where pattern starts, or -1

public static int kmpMatch(String text, String pattern) { int n = text.length(); int m = pattern.length(); int fail[] = computeFail(pattern); int i=0; int j=0;

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while (i < n) { if (pattern.charAt(j) == text.charAt(i)) { if (j == m - 1) return i - m + 1; // match i++; j++; } else if (j > 0) j = fail[j-1]; else i++; } return -1; // no match } // end of kmpMatch()

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public static int[] computeFail( String pattern) { int fail[] = new int[pattern.length()]; fail[0] = 0; int m = pattern.length(); int j = 0; int i = 1; :

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while (i < m) { if (pattern.charAt(j) == pattern.charAt(i)) { //j+1 chars match fail[i] = j + 1; i++; j++; } else if (j > 0) // j follows matching prefix j = fail[j-1]; else { // no match fail[i] = 0; i++; } Similar code } to kmpMatch() return fail; } // end of computeFail()
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Usage
public static void main(String args[]) { if (args.length != 2) { System.out.println("Usage: java KmpSearch <text> <pattern>"); System.exit(0); } System.out.println("Text: " + args[0]); System.out.println("Pattern: " + args[1]); int posn = kmpMatch(args[0], args[1]); if (posn == -1) System.out.println("Pattern not found"); else System.out.println("Pattern starts at posn " + posn); }
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Example
T: P:
a b a c a a b a c c a b a c a b a a b b
1 2 3 4 5 6

a b a c a b
7

a b a c a b
8 9 10 11 12

a b a c a b
13

a b a c a b
k F(k) 0 0 1 0 2 1 3 0 4 1

14 15 16 17 18 19

a b a c a b

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Why is F(4) == 1?
F(4)

P: "abacab"

means

find the size of the largest prefix of P[0..4] that is also a suffix of P[1..4] = find the size largest prefix of "abaca" that is also a suffix of "baca" = find the size of "a" =1

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KMP Advantages
KMP

runs in optimal time: O(m+n)

very fast
The

algorithm never needs to move backwards in the input text, T

this makes the algorithm good for processing very large files that are read in from external devices or through a network stream

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KMP Disadvantages
KMP

doesnt work so well as the size of the alphabet increases

more chance of a mismatch (more possible mismatches) mismatches tend to occur early in the pattern, but KMP is faster when the mismatches occur later

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KMP Extensions
The

basic algorithm doesn't take into account the letter in the text that caused the mismatch.
a b a a b x P: a b a a b a Basic KMP does not do this. a b a a b a

T:

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5. More Information

Algorithms in C++ Robert Sedgewick Addison-Wesley, 1992

chapter 19, String Searching

This book is in the CoE library.

Online

Animated Algorithms:

http://www.ics.uci.edu/~goodrich/dsa/ 11strings/demos/pattern/ http://www-sr.informatik.uni-tuebingen.de/ ~buehler/BM/BM1.html http://www-igm.univ-mlv.fr/~lecroq/string/

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