Unit 1 BioChemistry AP Bio
Unit 1 BioChemistry AP Bio
Biochemistry
Deschampions AP Biology
Topic 1.2
Elements of Life
★ Learning Objective ENE-1.A: “Describe the composition of
macromolecules required by living organisms.”
Biochemistry Intro
question
Question: What are atoms and why are
they important to living organisms?
Think about the question
Pair- Share your answer with your shoulder
partner
Share- I will call on someone to share their
answer.
★ Smallest stable unit
of matter that has
the characteristics
of its specific
element
★ Structure: Nucleus
with electron
orbitals.
○ Protons are
positively charged
Atoms ○ Neutrons are
neutral and have
Or…. What is the smallest unit of matter that biochemists care about for 800, Alex?
○ Electrons are
negatively
charged
○ Each orbital has a
different amount
of energy
associated with it.
■ Closer to the
nucleus = lower
energy level
Atoms orbital
■ Farther away=
Or…. What is the smallest unit of matter that biochemists care about for 800, Alex?
Valence
★ Valence electrons
Electron ○ Found in the
outermost orbital
★ Used for making
different types of
bonds!
★ Most elements want 8
electrons in their
valence shell because
Atoms this makes them the
most stable.
Or…. What is the smallest unit of matter that biochemists care about for 800, Alex?
Have a positive Have more
Cations
Protons than
(+ )Charge Electrons
★Atoms are usually
neutral
○# electrons = # of
Ions
protons
★Non-neutral
atoms are called
ions. Two Types.
Have more Have a
Anions
Electrons negative (-)
than Protons charge
Elements of Life
Main Elements of life:
Carbon, Hydrogen, Oxygen, Nitrogen (CHON)
Which of the following statements best describes how molecules released by the fish become
nutrients for the plants?
A. The carbon dioxide molecules released by the fish are converted by the bacteria to
oxygen atoms, which are used by the plants to make water molecules.
B. The oxygen molecules released by the fish are converted by the bacteria to
ammonia molecules, which are used by the plants to make lipids and fatty acids.
C. The nitrites released by the fish are converted by the bacteria to carbon dioxide
molecules, which are used by the plants to make carbohydrates.
D. The ammonia molecules released by the fish are converted by the bacteria to
★ Electronegativity is the
measurement of how
strongly atoms attract
bonding electrons to
themselves.
○ i.e. It’s the measurement
of how much they will
pull electrons toward
themselves.
Electronegativi ★ Determined by how many
electrons are in the
ty valence shell.
★ The closer to eight
Or…. probably the single most important chemistry concept
to understand if you want to be able to understand anything electrons they have, the
in this unit, biochemistry, organic chemistry (basically any
chemistry) more electronegative the
element is.
Electronegative Elements you need to know
Polarity
electrons toward itself.
★ Electropositive element
will be partially positive
AKA a direct consequence of electronegativity that is
super important to how life as we know it operates. because it has less
electron density near
Hydrogen bonds
Weak attraction between a hydrogen bonded to an
oxygen (O), Nitrogen (N) or Fluorine (F) and
another O, N or F atom.
★ Why only O, N and F?
○ They are very
electronegative.
○ Hydrogens bonded to them
have a partial positive
charge.
○ O,N and F in other areas
have a partial negative
Bonds and Molecular Shape
★ How atoms are bonded
together determines their
overall shape.
★ The structure, shape and
chemical properties of a
molecule determines the
function of that molecule.
○ This is super important and will
show up over and over again
Laws of Conservation
Deschampions AP Biology
Topic 1.4 and 1.6
Properties of Biological Macromolecules and Nucleic Acids
★ Learning Objective SYI 1.B: “Describe the
properties of the monomers and the type of bonds that
connect the monomers in biological macromolecules.”
★ Learning Objective IST 1.A:Describe the structural
similarities and differences between DNA and RNA.
Biomolecules Intro
question
Question: What are some types of
biomolecules you know about, and what
Think
are about the question
they used for?
Pair- Share your answer with your shoulder
partner
Share- Deschamps will call on someone to
share their answer.
★ Carbohydrates are commonly
referred to as sugars.
★ Monomers =
monosaccharides
○ Simple sugars like glucose
★ Polymers = polysaccharides
○ Complex carbohydrates like
starches, cellulose, etc.
★ Structure
○ Hexamer Rings
tes ○ Structure
■ Cellulose in plants
■ Chitin in insects/ crabs
★ Elemental Composition
○ Carbon, Hydrogen,
Oxygen
○ 1C: 2H: 1O ratio
○ E.g. C6H12O6
★ Glucose is a monosaccharide
that is broken down during
aerobic cellular respiration
to help make ATP energy.
★ Carbohydrates are also
Carbohydra found in small amounts on
the cell membrane and help
Structural Cellulose
More branches means Structural
more monomers can Carbohydrat carbohydrates
be broken off at once,
allowing for cellular
Structural
es have a linear
respiration to happen Carbohydrate structure and
faster to make more are able to
★ Monomers are fatty acids
★ Polymers are lipids
★ Main Functions
○ Long term energy
storage
○ Insulation and protection
of organs
★ Structure
○ Long hydrocarbon
chains
Acids
Deoxyribonucleic Acid (DNA)
vs. Ribonucleic Acid★ Single
★ DNA Structure
(RNA) Stranded
○ Eukaryotes: Linear, double ★ 3 Types of RNA
stranded double helix ○ Messenger RNA
○ Prokaryotes: Circular, double
stranded double helix. (mRNA)
★ Stores the genetic ○ Transfer RNA
code (tRNA)
★ 4 nucleotides ○ Ribosomal RNA
○ Adenine
DNA (rRNA)
○ Thymine
★ Used for protein
○ Cytosine
○ Guanine synthesis
★ Nucleotides have a ★ 4 nucleotides
deoxyribose sugar ○ Adenine
★ More stable than RNA ○ Uracil
★ Location ○ Cytosine
○ Eukaryotes: Nucleus
○ Prokaryotes: Floating in the ○ Guanine
cytoplasm of the cell ★ Nucleotides have a
ribose sugar in them
Identify the Macromolecule….
Carb, Protein, Lipid, NA? Subcategory?
You Practice (Think, Pair,
Share)
Think to yourself: Which
part(s) of the nucleotide
could you examine to figure
out if this nucleic acid is DNA
or RNA.
Instructions: Put an X in each box that correctly represents a function of the corresponding
biomolecule.
Can be
Helps Part of the
Energy Codes for broken
catalyze Cell
Storage Traits down for
reactions Membrane
energy
Carbohydra
te X X X
Lipid X X X
Protein X X X
Nucleic
Acid X
Any
Questions?
★ Contact Deschamps
Structure and Function of
Proteins
Deschampions AP Biology
Topic 1.5
Structure and Function of Biological Macromolecules
★ Learning Objective SYI 1.C: “Explain how a change
in the subunits of a polymer may lead to changes in
structure or function of the macromolecule.”
Proteins Intro question
Question: What do you think would
happen to an organism with a mutated
DNA Polymerase protein?
Think about
(DNA polymerase the question
helps synthesize new
Pair- Share your answer
DNA)with your shoulder
partner
Share- Deschamps will call on someone to
share their answer.
★ 4 levels of protein
structure
○ Primary
○ Secondary
○ Tertiary
○ Quaternary*
★ Each level builds on the
others.
★ Each level is held
Protein together by different
bonds and interactions
Structure formed between
amino acids.
○ N terminus is located
at the first amino
acid in the chain
■ Amine group is free
○ C terminus is located
on the last amino
acid in the chain
■ Carboxyl group is
free
Protein ★ All proteins have
-
Property: ______________________ Property: ______________________
Capable of H-Bonding: Capable of H-Bonding:
____________ ____________
Primary protein Structure
★ Primary protein structure
is the sequence of
amino acids formed via
protein synthesis.
★ The amino acid
sequence is what
determines how the
protein folds at all
levels.
★ Changing the amino
acid sequence will
Formation of the Primary protein Structure
★ Primary structure is formed
when two amino acids are
covalently bonded
together via dehydration
synthesis.
○ Peptide bond =
covalent bond formed
between two amino
acids.
★ Requires the help of
enzymatic RNA in ribosomes.
★ Peptide bond forms
Secondary Structure
Examples of backbone
hydrogen bonding are
outlined in red.
UNFOLDED FOLDED
interactions
broken if the protein is
outside of the normal
★ Disulfide bridges are
covalent bonds
between the sulfur
atoms present in the
side chains of two
cysteine amino acids.
★ Disulfide bridges are
R Group very strong and are
not sensitive to
interactions: changes in pH or
Disulfide Bridges temperature.
★ More disulfide
bridges = stronger
structure
★ Cysteine AA’s do not
have to be near each
other in the sequence
to form the bond.
R Group ★ Usually found in
proteins exposed to
interactions: harsh conditions
Disulfide Bridges ○ High temperature
Quaternary Structure
★Quaternary structure occurs when
multiple proteins come together
to form a protein complex.
○These proteins are all folded at
the tertiary level.
★Not all proteins are involved in
quaternary structures.
★Held together by interactions
between the variable side
chains and hydrogen bonding
Each of the different colors above
between the peptide backbones represents a tertiary protein.
of the different proteins.
Any Questions?
★ Contact Deschamps