Year One Lectures Wills For Ajc With MW Answers For Lectures
Year One Lectures Wills For Ajc With MW Answers For Lectures
CONTENT OF LECTURES
Prof M Wills 1
What you should know – what you will learn
What you should know by now: NOTE WE ARE GOING TO REVISE SOME OF THIS
Prof M Wills 2
Nucleophilic substitution reactions – overview:
Why these reactions are important and some examples:
Substitution reaction: replacing one group with another one! Some examples:
3
Substitution at a saturated (sp ) carbon atom (M Wills section):
Br
N + HBr
H2N H
Substitution at an unsaturated (sp2) carbon atom (discussed in G. Challis section, term 2):
Br O
N + HBr
O H2N H
Leaving group
X
O + X
H + O
H
Key point: Good leaving groups are halides (Cl, Br, I), OSO 2R, and other groups
which stabilise a negative charge.
Prof M Wills 4
Mechanisms of substitutions reactions: SN2
There are two major mechanisms of substitution reactions.
It is a single step mechanism; the nucleophilic adds and the leaving group is simultaneously
displaced in the same step. A concerted mechanism.
Br
H
H O H +
H Br
O
Rate = k [nBuBr][nPrO-]
What happens if I double the concentration of bromide? What if I double the concentration
of bromide and of propoxide?
Transition state
Bromide
Energy Ether (product)
(starting material)
Reaction co-ordinate.
Prof M Wills 5
The transition state for SN2 reactions:
The SN2 mechanism – structure of the transition state.
Br
Br H
H H + Br
H
H H O
O What ‘shape’ do the
groups around this
atom define?
O
Note partial bonds to nucleophile and leaving group. Nucleophile adds electron density to s* antibonding orbital.
*** Key point of nomenclature; it’s SN2 not SN2*** This is important ***
Prof M Wills 6
Stereochemical consquences of SN2 reactions:
S configuration:
R configuration
Br
Br H
H Me + Br
H
Me Me O
O
O
INTERMEDIATE
cation
Br first step second step Me
Me Me
SLOW FAST Me Me
Me Me
Me O -H O
- Br H
O H
H
The first step is the rate-
determining step (rds)
What happens if I double the concentration of bromide? What if I double the concentration
of bromide and of alcohol?
First transition state
Second transition state
Cation
(intermediate)
Bromide
Energy Ether (product)
(starting material)
Prof M Wills 8
Stereochemical consquences of SN1 reactions:
Br
HO HO
Me Me
Me or
Ph Ph Ph
- Br
S configuration:
Me
Ph O
R configuration S configuration:
O + Me
50% Ph 50%
A racemic product is formed.
(note - loss of proton not illustrated)
Prof M Wills 9
Nucleophilic substitution reactions: Summary.
The ‘1’ and ‘2’ refer to the molecularity of the reaction (the number of species in the rate
Expression).
Make sure you understand the difference between an intermediate and a transition state.
RNH Br
H RHN Me
Me
- Br
Prof M Wills 10
Factors which influence SN2 and SN1 reactions:
‘If I do a substitution reaction, will it go through an S N2 or SN1 mechanism?’
A primary halide is more likely to undergo SN2, a tertiary SN1. A secondary halide may do
both, although a good nucleophile would favour S N2 and a weak nucleophine SN1.
There are exceptions to all these guidelines.
Prof M Wills 11
Other factors that increase cation stability.
Cation stability can also be increased by an adjacent double bond or aromatic ring:
H
H
H is more
Charge is delocalised stable than
into the aromatic ring H
or double bond.
benzyl cation
H
H
is more
H stable than
allyl cation H
However an adjacent benzyl or allyl group can also increase the rate of S N2 reactions, by
stabilising the transition state:
OMe
MeO + Br OMe H
via H
+ Br Br
Prof M Wills 12
Factors which influence SN2 and SN1 reactions cont:
ii) Effect of the solvent. This section has been expanded from the original circulation.
Solvent effects can be complex and a good summary can be found on p428-429 of Clayden et al.
Solvents which stabilise cations will tend to increase the rate of S N1 (because a ions are formed in the rate
determining step). These include dipolar aprotic solvents such as dimethylformamide (DMF) and dimethylsulfoxide
(DMSO) and dipolar protic solvents such as water or carboxylic acids. For S N2 reactions the situation is more
complex. A nonpolar solvent may speed up the reaction in a situation where the transition state is less polar than the
localised anions, and the product is neutral. In situations where a charged product is formed by the reaction of
neutral substrates, then a polar solvent such as DMF will be better because the transition state is more polar. Dipolar
aprotic solvents such as DMF can also make anionic nucleophiles more reactive in S N2 reactions because they
solvate the cation and make the anion ‘freer’ to react. Polar protic solvents (e.g. water, alcohols, carboxylic acids)
however can retard the rate of S N2 reactions by solvating the anion and making it less reactive.
iv) Effect of the leaving group; good leaving groups are needed for both mechanisms.
Prof M Wills 13
SN2 vs SN1 – all aspects must be considered:
(DMSO=Me2SO)
MeO K +
Br H H OMe INVERSION
i.e. good nucleophile, not very hindered substrate, good leaving group, hence SN2.
Ph H2O Ph Ph
+ RACEMIC
Br Me Me OH 50:50 HO Me
i.e. weak nucleophile, more hindered substrate, potential for stable cation, hence SN1.
Prof M Wills 14
Formation and use of the OTs leaving group (very common
in synthesis):
OH O O (TsCl) O O
S S OTs
+ Cl O
H
H H
H H
H
O O O O
Et3N: S S
H O
O O +
(base)
H
H TsO
Key point; Learn what a OTs (tosyl group) is – it will come up again!
Prof M Wills 15
Alkenes– reminder of structure and formation:
Already discussed in Prof M. Shipman’s lectures:
In the case of a carbon atom attached to three other groups (by two single bonds and one double bond)
the single 2s and two 2p orbitals mix (rehybridise) to form three sp 2 orbitals. These are all arranged at
mutual 120 degree angles to each other and define a trigonal shape, the remaining p orbital projects out
of the plane of the three sp2 orbitals and overlaps with an identical orbital on an adjacent atom
to form the double bond:
The resulting structure is rigid and cannot rotate about the C=C bond without breakage of the
bond between the p-orbitals (the p bond). The can be separated into E and Z configuration isomers.
The p bond is much more reactive than the s bond – the bonds are not equivalent to each other.
Prof M Wills 16
Alkynes – reminder of structure and formation:
In the case of a carbon atom attached to two other groups (by one single bonds and one triple bond)
the single 2s and one 2p orbitals mix (rehybridise) to form two sp orbitals. These are all arranged at
mutual 180 degree angles to each other and define a linear shape, the remaining p orbitals projecting out
from the sp orbital to overlap with identical orbitals on an adjacent atom to form the triple bond:
Both p bonds in an alkyne are much more reactive than the s bond.
Prof M Wills 17
Alkenes – formation:
Most (but not all) alkene formation reactions involve an ELIMINATION reaction.
Br H Ph
H Ph
Ph Ph and/or
Ph Ph H
H - HBr
H H H
E-alkene Z-alkene
Key point – H from one carbon atom and a leaving group (typically a halide) from the adjacent
carbon atom.
Prof M Wills 18
Mechanisms for the formation of alkenes: E1 and E2:
H
Br H
Rate = k [Cyclohexylbromide][MeO-]
H H
MeO H
(This is a base)
Transition state
Bromide
Energy Alkene (product)
(starting material)
Reaction co-ordinate.
Prof M Wills 19
E2 elimination – stereochemical implications: The ‘anti
periplanar’ requirement.
E2 reactions require correct orbital alignment in order to work. The optimal
arrangement is ‘anti periplanar’, where the ‘H’ and ‘Br’ (in an alkyl bromide) are anti to
each other.
Ph
Ph
can form a E- or Z-alkene upon elimination:
Br
Base:
H
H Ph H
Ph Ph Ph H
H Ph
H H Ph
Br
Base: E- alkene.
H
H H H
H Ph H H
Ph Ph Ph Ph Ph
Br
Z- alkene.
Substrate But O -
H tBuOH
H tBuOK
(base) Ph H
Ph H Ph H Ph H
Ph Ph Ph
H H H H Ph
Br Br - E- alkene.
Br
But O -
H tBuOH
H tBuOK
H H
H (base) H H H
H H
Ph Ph Ph
Ph Ph Ph Ph Ph
Br Br - Br Z- alkene.
The alignment of s and s* orbitals in the substrate leads to a smooth transition to a p bond in
the product. Which is the most likely product? The E, or trans, product.
Prof M Wills 21
The E1 elimination mechanism:
E1 = Elimination, unimolecular. It is a two-step reaction.
It proceeds via a cationic intermediate.
Me
Me Me
Br
H H H
H -Br H
Et3N:
Cation
(intermediate)
Bromide
Energy Alkene (product)
(starting material)
Reaction co-ordinate.
Prof M Wills 22
Nature of the intermediate in an E1 reaction:
E1 reactions proceed through a ‘flat’, i.e. trigonal, cation (like S N1 reactions).
Me
Me Me
Br
H H H
H -Br H
sp2 carbon H
3
sp carbon
Me H
Me Me Me Me
Me
Me Me
Br Et3N (mild base)
and and
E1
Prof M Wills 23
Formation of alkenes by elimination of alcohols:
See if you can write the mechanism for the following (E1) reaction:
Me
Me HCl (strong acid) H Me Me
HO MeOH (solvent) O
H
H H H
MeOH
Why is acid needed when the alcohol is the leaving group – why can’t we rely on a base?
What other alkene product can be formed, and how?
What would be the effect of using a base and an acid in the following? – write mechanisms.
HO H2SO4 Br KOtBu
? ?
K O
To be completed in lectures.
The Wittig reaction is one of a number of reaction that provide a means for controlling where
the double bond ends up.
Ph3P CH2
O H2C
Phosphonium ylid
+ Ph3P O
is not formed
base
PPh3 + CH3Br Ph3P CH3 Ph3P CH2 Ph3P CH2
Prof M Wills 25
Some alternatives to ‘simple’ elimination – the Wittig reaction
(this is important – learn it)
Here is the mechanism of the Wittig reaction (you need to complete it).
O
O Ph3P
Ph3P C
C H2
H2
H2C
+ Ph3P O
Prof M Wills 26
Substitution vs elimination, base vs nucleophile:
Sometimes a particular substrate can undergo a substitution or an elimination reaction.
The ‘is an alkoxide a nucleophile or a base?’ question. Answer - depends what it does:.
Br MeO Na MeO
Alkoxide is a nucleophile.
The most important factor is probably the substrate structure – deprotonation may outpace
nucleophilic addition when a substrate is very hindered. Certain substrates cannot undergo
elimination reactions.
Prof M Wills 27
Reactions of alkenes with electrophilic reagents - bromine:
Alkenes are electron rich (in the p system) and react with electrophilic reagents:
Br
R Br2 R
R R
Br
Br Br
R R
R R R
R
Br
Br Br Br
Br
Br
what about
trans
racemic
Prof M Wills 28
Further additions of electrophiles to double bonds - HBr:
R Br
R R
R HBr
R R
R
R H
The mechanism involves the addition of a proton first (with the electron-rich alkene), then the
bromide. This is logical, because the alkene is electron rich.
R R Br
R R Br R R
R R R R
R R H H
H
Prof M Wills 29
Regioselectivity of electrophilic additions to alkenes:
Addition of HCl and HBr (and other acids) across unsymmetric alkenes results in formation of the
more substituted halide (via the more substituted cation).
H H Br
H3C H H3C H
H3C HBr
H H H H
H
Br Major H Minor
H
The mechanism involves the addition of a proton first, as before, but in this case the unsymmetrical
intermediate has a larger density of positive charge at one end.
What about ?
Ph
Prof M Wills 30
Acid catalysed hydration (addition of water) to alkenes:
H H OH
H3C H H3C H
H3C H2O
H H + H H
H +
H catalysis Major Minor
OH H
H
The mechanism involves the addition of a proton first, as before, followed by addition of water, the
regioselectivity is the same as for addition of HBr:
OH2
H H
H H
H3C H H H3C H H
H3C acid H3C H2O H H
H H regenera-
(H ) H O tion of H O
H H H H H
H
This mode of addition of H2O is referred to as ‘Markonikov’ selectivity (i.e. formation of the
MOST substituted alcohol via the MOST substituted cation.
Prof M Wills 31
Radical reactions of alkenes: HBr in diethylether containing
peroxides.
RO OR 2 RO . (radical)
HO. HO.
H Br Br .
Br . Br
. .
Br
. H Br
Br
H + Br .
Prof M Wills 32
Nucleophilic additions to C=C bonds – require nearby
electron withdrawing groups (‘ewg’).
The polar effects of C=O bonds can be transmitted through adjacent C=C bonds, e.g.
An enone: (a compound with a directly linked C=C and C=O double bond) can react with a
nucleophile at either the C of the C=O bond or at the C at the end of the C=C bond. This is called
conjugate addition, 1,4-addition and/or ‘Michael’ addition.
H H
H C O C O
H
C C C C
H R
H H
H H
R (a nucleophile)
Add acid at end
of reaction.
H
The oxygen atom drives the reaction- H
C O
it is more likely to gain a negative C C
R
charge because it is more H
H H
electronegative than adjacent atoms.
Prof M Wills 33
Polymerisation of alkenes/reactions of alkynes.
Alkenes/Alkynes
H3C
n polymerisation
Alkynes are capable of many of the same reactions as alkenes, but twice if enough
reagent is used, e.g. addition of bromine:
Br
Br Br
Br2 Br2
Br Br
Br
Prof M Wills 34
Cycloaddition reactions of alkenes: The Diels-Alder reaction.
+ O O
O O
a conjugated Alkene
diene (dienophile)
Reaction is concerted i.e. all bonds are formed and broken at the same time:
O O O
O O O
O O O
Stereochemistry: Bonds are formed on one face of the alkene, hence there is a high degree of stereocontrol.
Prof M Wills 35
Alkene hydroboration reaction (important)!
i) BH3
OH
ii) H2O2, NaOH
OH
H , H2O
Prof M Wills 36
Hydroboration mechanism – to be completed in lecture:
H
BH2 i) BH3
OH + B(OH)3
Concerted addition ii) H2O2, HO
of B-H bond across
the alkene - BH3
boron adds to least
hindered end: H2O
BH2
B
O
3
HO-O
BH
B
2 O
2
This is a migration HO-O
reaction
HO-O - OH
B B B
All the B-H bonds
are utilised. 3 2 2
Three alkenes add O
O
to one borane. OH
Prof M Wills 37
Reduction reactions of alkenes: and alkynes, stereochemistry
– formation of cis alkenes by hydrogenation.
First you need to make a substituted alkyne:
H R1 R2
H
H2 (gas), Pd/C, quinoline
R1 R
2 H H
1 2
R R
or H2 (gas), Lindlar catalyst
catalyst surface
Why is the quinoline added to the catalyst? What happens if you do not add it?
You get reduction right down to the alkane.
The reduction takes place on a surface, and the hydrogen is transferred to one side
of the alkyne.
Prof M Wills 38
trans Alkenes can also be formed from alkynes:
Na Na + e
2
e R NH3 H R2
1 2
R R .
1 .
R R1
Note this is a radical anion.
e
H R2 NH3 H 2
R H
R1 H R1 R1 R2
Prof M Wills 39
Reduction of alkenes to alkanes – hydrogenation most commonly used:
H H
H H
Stereochemistry:
note a
cis alkene is
formed
Me Me Me Me H Me H H
H Me H H H H H H
in general, more stable (more substituted) alkenes react more slowly.
Why use a support to aid product separation, how does the reaction work?
Prof M Wills 40
Hydrogenation of alkenes to make margarine:
Polyunsaturated fats are regarded as healthier than saturated ones but tend to be liquids so
They are partially hydrogenated to make margarine – solid but still with double bonds in..
H2 / Ni
H2 / Ni
H2 / Ni
Saturated fats have high melting points because they pack more efficiently.
Prof M Wills 41
Alkene oxidation reactions:
Alkene oxidation reactions can give epoxides, diols, or even ketones from complete
cleavage of the alkene.
peracid
O
R
O O OH HO OH 2
H R2 H R2 OsO4 H R
R1 H H osmium R1 H
R1 tetroxide
Epoxide diol
O3
H
+ R2
O O
R
1 H
What is the structure of ozone? Look it up Why might these products be useful?
Prof M Wills 42
Epoxidation of alkenes using peracids:
This is mCPBA, O O
H H
(meta-chloroperbenzoic acid) Ar
which is a commonly used peracid O O O O
Cl
mCPBA mCPBA
O O
H H
Ar O Ar
H R
2
O O H R
2
H H H O H
O O
1 1
R H R H R1 R2 R1 R2
trans (E) alkene cis (Z) alkene
H R2 R1 H
R1 H
Prof M Wills 43
Ozonolysis of alkenes cleaves the double bond:
H R2 i) O3 H R2
+
O O
R 1
H ii) reducing agent 1
R H
(e.g. Zn metal, Ph3P, Me2S
reducing agent
O
O O O
H R
2 H O O R2
H R2
O
O
1
R H 1 H R1 O H
R
ozonide
Prof M Wills 44
Alkene dihydroxylation:
Potassium permanganate (KMnO4)
O O 2 H2O OH
O O
Mn Mn
O O OH
O O
Mechanism should be
fairly easy to work out.
O O OH
O O 2 H2O
Os Os
O O OH
O O
i) OsO4 HO
ii) 2 H2O OH
OH
i) OsO4
OH
ii) 2 H2O
Note – OsO4 is expensive and very toxic. Better to use it catalytically (how would you do this?).
Prof M Wills 45
The Wacker Oxidation:
ClPd Cl O
catalytic PdCl2, H2O, O2, CuCl2
1
1 R
R
keto-enol
tautomerism
Cl H HO
Pd HO PdCl
+ HPdCl
1
1 R
R
1 R
OH2
Pd + HCl
Prof M Wills 46
What you should understand and know:
Prof M Wills 47