Bimolecules G10

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Biomolecules: Proteins and Nucleic Acids

PROTEINS
Proteins are made up of elements carbon,
hydrogen, oxygen, nitrogen, and sulfur. Let's
continue the story of Aaron Jay on his journey,
this time to the world of proteins. From the
result of his activity, he knew that egg white,
fish, meat, and cheese are foods rich in proteins.
He learned from their discussion that proteins
are found in all living cells. They are the second
most common molecules found in the human
body (after water) and makeup about 10% to
20% of the mass of a cell. So whenever Aaron
Jay eats protein-rich foods, his digestive system
breaks the long protein chains into a simpler
substance called amino acids
He learned from his Chemistry class that amino acids are
the building blocks of proteins. Of the 20 amino acids
found in human protein, only 11 can be synthesized by
the body, and 9 have to be supplied by the foods we eat.
These 9 amino acids are also called essential amino acids.

Adults only need to obtain eight of them: valine, isoleucine, leucine,


lysine, methionine, phenylalanine, threonine, and tryptophan. The
ninth amino acid- histidine- is only essential for infants. Your body
doesn't store amino acids, so it needs a regular daily supply of these
essential building blocks. Nonessential is a slightly misleading label
because these amino acids actually fill essential roles, but since your
body synthesizes them, they're not an essential part of your diet. Of
the 11 nonessential amino acids, eight are called conditional amino
acids. When you're sick or under significant stress, your body may Figure 1. Structure of amino acid
not be able to produce enough of these amino acids to meet your
needs. The list of conditional amino acids includes arginine,
glutamine, tyrosine, cysteine, glycine, proline, serine, and ornithine.
The remaining three-alanine, asparagine, and aspartate- are
nonessential.
Figure 12 shows the structure of amino acids. Amino acids are organic molecules
that contain two functional groups: a basic NH2 amino group and an acidic-COOH
carboxylic acid group.

When two amino acids react with each other in an acid-base reaction, a peptide is formed. The
basic amino group of one amino acid reacts with the acidic carboxylic group of another amino
acid, forming the peptide, and a molecule of water is lost.
This reaction shown above is Amino acids
classified as a condensation reaction Secondary protein structure
because the two amino acid Hydrogen bonding of the
molecules join together, and water peptide backbone causes the
amino acids to fold into a
is formed. The bond formed is repeating pattern.
called a peptide bond, and the
product is a dipeptide because it is Primary protein structure
made up of two amino acid units. Sequence of a chain of amino
acids.
Longer chains are called
polypeptides, and chains of 50 or Pleated Sheet
more amino acids are called
Tertiary protein Structure
proteins. Three dimensional folding
pattern of a protein due to side
chain interactions.

Quaternary protein structure


Protein consisting of more than
one amino acid chain
Proteins are characterized by their primary, secondary,
tertiary, and quaternary structures. The kind of amino acids,
which make up the chain, the sequence in which the amino
acids are arranged, and the chain's length distinguishes the
primary structure of proteins. The secondary structures of
proteins refer to the coiling of the protein chain a ∞-helix
structure, formation of b sheets, or twisting into random
structures. These structures result from interactions between R
groups, H- bonding, or S-S formation bonds between chains.
Protein molecules are so long that they automatically coil, fold
or twist. The resulting shape is unique for each polypeptide in a
particular medium, at a specific pH. The tertiary structure
describes the coiled chain's shape when it is folded or hydrated
in its natural state.
The quaternary protein structure involves the clustering
of several individual peptides into a final specific shape.
A variety of bonding interactions, including hydrogen
bonding, salt bridges, and disulfide bonds, hold the
various chains into a particular geometry.

Another type of protein is the enzymes. It is known as


biological catalysts. In Grade 8 Biology, you have learned the
amazing action of catalysts, particularly during the digestion
process. These molecules speed up biochemical reactions
Amino acids Primary protein structure Sequence of a chain of
amino acids. Secondary protein structure Hydrogen bonding of
the peptide backbone causes the amino acids to fold into a
repeating pattern. Pleated Sheet without themselves being used
up in the process. They are also highly specific. They act only
on certain molecules called substrates (reactants) while leaving
the rest of the system unaffected. The role of an enzyme can be
compared to a lock and a key.
The lock will not open unless you use the right key. In the same
manner, an enzyme works for a specific substrate like the
enzyme lactose. Its role is to breakdown the sugar lactose into
glucose and galactose. You must appreciate the role of the
enzyme in the body. Without them, chemical reactions in the
body may be too slow to occur in normal conditions and may
affect the normal functioning of the body's different systems.

NUCLEIC ACIDS

Nucleic acids are molecules that code for hereditary traits by


controlling the production of protein. Like proteins, nucleic
acids are a long chain of polymers consisting of simpler units or
monomers. There are two kinds of nucleic acids: DNA,
deoxyribonucleic acid, RNA, or ribonucleic acid. DNA found
mainly in the cell nuclei contains the genetic information that
codes for the sequences of amino acids in proteins. RNA is
found in many places in the cell and carries out the synthesis of
proteins.
The monomer of the nucleic acids is the nucleotides. They are
made up of three parts: a five-carbon sugar (pentose), a
phosphate group, and a ring-shaped base containing a nitrogen
base. In this model, the sphere represents a phosphate group, the
pentagon represents a five-carbon sugar (pentose), and the
rectangle represents a nitrogencontaining base.

The double-helix consists of two linear strands of polymerized


nucleotides that bound about each other. The two strands are
held together by hydrogen bonds that form between pairs of
nucleotides. Adenine (A) forms hydrogen bonds with thymine
(T) of the other strand. Cytosine (C) forms hydrogen bonds with
a guanine (G) of the other strand.
The process by which an identical copy of the original DNA is
formed is called DNA replication. An analogy of DNA
replication is opening a zipper. As you open, each side of the
zipper acts as a template to synthesize a new, complementary
strand. The result is two new DNA molecules with the same base
pair sequence as the original double helix

Proteins are responsible for observable traits like curly


hair, blue eyes, dark skin, etc. DNA and RNA molecules
direct the synthesis of proteins in the cells. However, this
is beyond the scope of this module.
Activity 1: Proteins and Nucleic Match!
Matching Types
Direction: Match column A with the correct answer on column B, write
only the letter of answer on the blank provided at the right side of column
A.
1. The building blocks of proteins a. Proteins
2. Are the polymers of amino acids b. Peptide
3. Known as the biological catalysts c. Amino acid
4. To be supplied by the food we eat d. Nucleic acid
5. When two amino acids react with each e. Essential Amino acids
Amino other in an acid-base reaction f. DNA
6. The sequence in which the amino acids are arranged g. RNA
7. Found mainly in the cell nuclei contain genetic h. Enzymes
information i. Primary Structure
8. Found in many places in the cell carries out the j. Nucleotides
synthesis of proteins
9. The monomers of nucleic acids
10. Are molecules that code for hereditary traits by
controlling the production of protein
Activity 2: Essentially for You!
Direction: Check (/) the appropriate column which describes the kind of amino
acids, the essential, non-essential, and conditional amino acids.
Activity 3: True or False
Direction: Check (√) the column for the true statement and mark (x) the
column for the false statement.

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