Algorithm 11th Lecture String Searching
Algorithm 11th Lecture String Searching
Algorithm
String Searching and Sorting
Sohail Ahmad
Barani Institute of Management Science
String Matching Algorithm
1. Exact String Matching
2. Approximate String Matching
Exact String Matching Algorithm:
Brute Force Algorithm
Boyer Morre Algorithm (Boyer Morre)
KMP Algorithm (Knuth – Morries – Pratt)
Robin Karp Algorithm (Robin Karp)
String matching
pattern: a string of m characters to search for
text: a (long) string of n characters to search in
Brute force algorithm:
1. Align pattern at beginning of text
2. moving from left to right, compare each character of
pattern to the corresponding character in text until
all characters are found to match (successful search); or
a mismatch is detected
3. while pattern is not found and the text is not yet exhausted,
realign pattern one position to the right and repeat step 2.
String Matching
Pattern: GATTTCG (length = m = 7)
Text: GATTTCATCAGATTTCGATACAGAT
GATTTCG
GATTTCG
GATTTCG
GATTTCG
GATTTCG
GATTTCG
GATTTCG
GATTTCG
GATTTCG
GATTTCG
GATTTCG
Text length = n = 25
Best Case: ?
Worst Case: ?
Brute Force String Matching
Pattern length = m;
Text length = n;
Best Case:
GATTTCATCAGATTTCGATACAGAT
GATTTCA
O(m) The pattern is found right away, but
you still have to do m comparison to verify
that is was found.
Brute Force String Matching
Pattern length = m;
Text length = n;
Worst Case:
O(mn)
How is this possible?
AAAAAAB
AAB
The running time indeed belongs to O(m(n-m+1)).
But as the Big-O notation is an upper bound,
this is also O(mn), as mn ≥ m(n-m).
Brute Force Algorithm:
Brute Force Algorithm Analysis
Time Complexities:
Best Case: O(n-m) if n>m
or O(m)
Worst Case: O(m(n-m+1)) or O(nm)
Space Complexity:
S(n) = O(1) or Constant.
Boyer Moore Algorithm:
Example:
Text: “Welcome to Advance Algorithm Class”
Pattern: ‘Advance’
A D V A N C E Length=7
Index: 0 1 2 3 4 5 6
A D V A N C E Length=7
Index: 0 1 2 3 4 5 6
Value= (length-index-1) D=7-1-1=5
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advanc e
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advanc e
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advanc e
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Letter A D V N C E *
Value 3 5 4 2 1 7 7
W e l c o m e t o A d v a n c e A l g o r i t h m C l a s s
Advance
Best Case : BM Algorithm
Text: A B C D A A A A B C D A
Pattern: X Y Z
Text Length = 12
Pattern Length = 3 Letter X Y Z *
Index 0 1 2
Value 2 1 3 3
Text Length = 12
Pattern Length = 3 Letter X Y Z *
Index 0 1 2
Value 2 1 3 3
Text Length = 12
Pattern Length = 3 Letter X Y Z *
Index 0 1 2
Value 2 1 3 3
Text Length = 12
Pattern Length = 3 Letter X Y Z *
Index 0 1 2
Value 2 1 3 3
Text Length = n= 12
Pattern Length = m = 3
Text Length = 9
Pattern Length = 3
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j+1
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j+1
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j+1
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3
Text: a b c x a b c d a b c d a b c y
Pattern: a b c d a b c y
j i
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
a b c x a b c d a b c d a b c y
a b c d a b c y
Pattern a b c d a b c y
Index 0 1 2 3 4 5 6 7
Value 0 0 0 0 1 2 3 0
Best Case : KMP Algorithm
Text: A B C D A A A A B C D A
Pattern: X Y Z
Letter X Y Z
Text Length = 12
Index 0 1 2
Pattern Length = 3
Value 0 0 0
Letter A B A B
Text Length = 9
Pattern Length = 3 Index 0 1 2 3
Value 0 0 1 2
Letter A B A B
Text Length = 9
Pattern Length = 3 Index 0 1 2 3
Value 0 0 1 2