Epi Lec 5
Epi Lec 5
Epi Lec 5
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Questions on validity of a test
• What proportion of the true cases are identified as cases by
this test?
– Sensitivity
• What proportion of the true non-cases are identified
as non-cases by this test?
– Specificity
• What proportion of the test positive cases are true
cases?
– Positive predictive value
• What proportion of the test negative cases are true
non-
cases?
– Negative predictive value 3
Measures of validity
• Sensitivity: Probability that a test will be positive when the test
performed on the people who actually have the disease.
Proportion of individuals with the disease correctly classified by
the screening test as having the disease
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Indices of accuracy
• Sensitivity and Specificity describe test accuracy and
are independent of disease prevalence
• The probability that a case is positive on a test (the
detectability of the case) depends on the point in
the preclinical phase at which screening is done.
• A disease which is very early in preclinical phase is
not detectable by most tests.
– the detectability of the disease tends to increase as
the
preclinical phase progresses
– Thus, sensitivity of a test can also be considered a function
of disease progression. 5
The 2x2 Table
Gold Standard
Disease Disease Total
Absent
Present
Test Positive a b a+b
Result ++ (TP) -+ (FP)
Negative c d c+d
+- (FN) -- (TN)
Total a+c b+d a+b+c+d
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Calculations
• Sensitivity
– a/(a+c)
– TP/(TP + FN)
• Specificity
– d/(b+d)
– TN/(TN + FP)
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Life is not always easy!
Tests of Continuous Variables
•We often test for a continuous variable, such as blood pressure for
which there is no “positive” or “negative” result
•establishing a cutoff level above which a test result is considered
positive and below which a result is considered negative
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Tests of Continuous Variables
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Tests of Continuous Variables
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Tests of Continuous Variables
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100%
sensitivity
17%
specific
ity
39%
sensitivity
100%
specific
ity
Sensitivity vs. Specificity
High Sensitivity High Specificity
(Few false negatives) (Few false positives)
• Serious disease (don’t • Subsequent diagnostic
want to miss cases) test is high risk and high
• Potential for person- cost
to-
person-transmission
• Subsequent diagnostic
test is low risk and
low cost
• Psychological burden on
individual is high
It’s a trade off between sensitivity and specificity
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Receiver Operating Characteristic (ROC) curves
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Receiver Operating Characteristic (ROC) curves
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Guidelines for interpreting
ROC curve
• .90-1 = excellent (A)
• .80-.90 = good (B)
• .70-.80 = fair (C)
• .60-.70 = poor (D)
• .50-.60 = fail (F)
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Positive predictive value
• Positive predictive value : % of individuals classified
by the screening test as having the disease who
actually have the disease
– % of people who do have the disease among those
classified as having the disease
– TP /(TP +FP)
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Negative predictive value
• Negative predictive value: % of individuals
classified by the screening test as disease-free who
do not have the disease
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Predictive Value Positive and
Prevalence
Of the 1,000 subjects, 180 have a positive test result. Of these 180 subjects, 80 have the
disease. Of the people who have a negative test result, 800 do not have
the disease
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Effects of Disease Prevalence on the
Predictive Value of a Screening Test
• NPV and PPV are determined by both the test
characteristics (i.e. sensitivity and specificity) and the
prevalence of the disease in the population that you are
testing the screening test
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Relationship Prevalence vs. PPV
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When to decide what
The head of a firefighters’ union consulted a university cardiologist because the fire
department physician had read an article in a leading medical journal reporting that a
certain ectrocardiographic finding was highly predictive of serious, generally
unrecognized, coronary heart disease. On the basis of this article, the fire department
physician was disqualifying many young, able-bodied firefighters from active duty. The
cardiologist read the paper and found that the study had been carried out in
hospitalized patients. What was the problem?
• Hospitalized patients have a much higher prevalence of heart disease than does a
group of young firefighters.
• Fire department physician had erroneously taken the high predictive value
obtained in studying a high-prevalence population and inappropriately applied it to
a low-prevalence population of healthy
Who is correct?
A physician visited his general internist for a regular annual medical examination,
which included a stool examination for occult blood. One of the three stool
specimens examined in the test was positive. The internist told his physician-patient
that the result was of no significance because he regularly encountered many false
positive test results in his busy practice. The test was repeated on three new stool
specimens, and all three of the new specimens were now negative. Nevertheless,
sensing his patient’s lingering concerns, the internist referred his physician-patient
to a gastroenterologist. The gastroenterologist said, “In my experience, the positive
stool finding is serious. Such a finding is almost always associated with pathologic
gastrointestinal disorders. The subsequent negative test results mean nothing,
because you could have a tumor that only bleeds intermittently.
• Prevalence of disease:
(TP+FN)/ (TP+FN+TN+FP)
# of individuals who are truly diseased
total # of individuals
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Screening programs
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Suitable screening program
• Acceptable to population
– Free of discomfort and risk
– Convenient and attractive to target population
• Low cost
• High PPV
• High NPV
• Appropriate follow-up for positive screenees must
be in place
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Successful screening program
• For any screening program to be successful at
reducing mortality and morbidity, a substantial
proportion of cases must be detected during the
preclinical phase with enough time for treatment
to be more effective than it would have been if
treatment was given at a later time point.
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WHO — Principles of Screening
Guidelines were published in 1968, but are still
applicable today.
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Enhancement of screening program
• Apply screening among high risk population
– Net effect: increasing prevalence increases
PPV
• Targeting high risk group of individuals can
greatly improve feasibility of screening program
if disease is very rare
– Detecting most of the cases that would be
detected by screening the entire population
– Overall cost of screening is reduced
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Bias in screening program
evaluation
• Selection bias
– Volunteer effect
• Healthy people more likely to volunteer for
tests
• Lead-time bias
• Length bias
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Lead time bias
An woman had biologic onset of breast
cancer in 2000. Because the disease
was subclinical at that time, she had no
symptoms. In 2008, she felt a lump in
her breast which precipitated a visit to
her physician, who made the diagnosis.
The patient then underwent a
mastectomy. In 2010, she died of
metastatic cancer.
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Length time bias
a kappa:
>0.75 represents excellent agreement
<0.40 represents poor agreement,
0.40 - 0.75 represents intermediate to good agreement.
Example Kappa
Example Kappa
Level of agreement?
excellent!
Adverse effects of screening
1. Stress and anxiety caused by a false positive
screening result.
2. Unnecessary investigation and treatment of false
positive results.
3. Prolonging knowledge of an illness if nothing can
be done about it.
4. A false sense of security caused by false
negatives, which may even delay final diagnosis.
5. Overuse/waste of medical resources.
6. Unnecessary and uncomfortable procedures
looking for a disease that is unlikely.
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