03 Cellular Organization
03 Cellular Organization
Cellular Organization
Lloyd O. Balinado, DBS, CvSU
Chapter Outline
• Cellular Level of Organization
• Prokaryotic and Eukaryotic Cells
• Cell Ultrastructure and Function
• The Nucleus
• The Plasma Membrane
CELLULAR LEVEL OF
ORGANIZATION
Cellular Organization
About 200 different types of specialized cells carry out a
multitude of functions that help each system contribute to the
homeostasis of the entire body. At the same time, all cells share
key structures and functions that support their intense activity.
Discovery of Cell
• 1590: Janssen Bros. (Hans and Zacharias) invented the flea
glasses
• 1665: Robert Hooke observed thinly sliced piece of cork;
observed empty compartments which reminded him of the
cells in the monastery and gave the Latin name cellulae
• 1667: Anton van Leeuwenhoek developed microscope with
300x magnification
Cell Theory
• A unifying concept in biology
• States that:
1. All organisms are composed of cells
• German botanist Matthias Schleiden in 1838
• German zoologist Theodore Schwann in 1839
2. All cells come only from preexisting cells
• German physician Rudolph Virchow in 1850’s
3. Smallest unit of life
Cell Size and Shape
• Mycoplasma: smallest cell; a bacterium measuring 0.0001
mm in diameter
• Nerve cells in giraffe’s neck: measure 3.0 m (9.7 ft)
• Micrometer (µm): common unit of measure in the study of
cell
• Spherical: ideal shape
Cell Size and Shape
• Cell shape is related to its functions:
• Long for contraction (muscle cell)
• With protoplasmic processes for conducting impulses (nerve cell)
• Concave disc for O distribution (blood cell)
Cell Size and Shape
Shapes of Bacterial Cells
PROKARYOTIC AND
EUKARYOTIC CELLS
Main Types of Cells
1. Prokaryotic
• Domains Archaea and Bacteria
2. Eukaryotic
• Domain Eukarya
Basic Features of All Cells
1. Plasma Membrane
2. Cytosol
3. DNA
4. Ribosomes
Basic Features of Prokaryotic Cells
1. No true nucleus
2. DNA located in nucleoid region
3. No membrane-bound organelles
4. Cell wall, plasma membrane and cytoplasm
Typical Structure of a Prokaryotic Cell
Basic Features of Eukaryotic Cells
1. DNA in nucleus
2. Nuclear envelope with pores
3. Membrane-bound organelles
4. Plasma membrane and cytoplasm
5. Larger in size
Prokaryote vs. Eukaryote
CRITERIA PROKARYOTES EUKARYOTES
Nucleus Nucleoid region True nucleus
Membrane-Bound Absent Present
Organelles
Complexity Less complex More complex
Organization Unicellular Uni/Multicellular
Size 1-10 µm 10-100 µm
Cell Division Binary Fission Mitosis and Meiosis
Structure
• Serve in protein synthesis
Ribosome
• Composed of rRNA
– Consists of a large subunit and a
small subunit
– Subunits made in nucleolus
• May be located:
– On the endoplasmic reticulum
(thereby making it “rough”), or
– Free in the cytoplasm, either singly or
in groups called polyribosomes
Ribosome
Structure
CYTOPLASM • Contains various organelles
• Organelles are small, usually
membranous structures that are
best seen with an electron
microscope.
• Each type of organelle has a
specific function.
• Various cellular activities separated
from one another by membranes
CYTOPLASM • “Factory area”
• Site of most cellular activities
• Major elements:
1. Cytosol – semitransparent fluid
2. Organelles – metabolic machinery;
includes the endomembrane system
and energy-related organelles
3. Inclusions – stored nutrients/cell
products
Cytosol • Matrix; intracellular material
• Differs in different cell
• Mostly water
Organelles • metabolic machinery; includes the
endomembrane system and energy-
related organelles
Endomembrane System • Restrict enzymatic reactions to
specific compartments within cell
• Consists of:
– Nuclear envelope
– Membranes of endoplasmic reticulum
– Golgi apparatus
– Vesicles
• Several types
• Transport materials between organelles
of system
• Rough ER
Endomembrane
– Studded with ribosomes on
System:
cytoplasmic side
Endoplasmic Reticulum
– Protein anabolism
• Synthesizes proteins
• Modifies proteins
• Smooth ER
– No ribosomes
– Synthesis of lipids
Endomembrane
System:
Endoplasmic Reticulum
Endomembrane • Consists of 3-20 flattened, curved
System: saccules
Golgi Apparatus • Resembles stack of hollow
pancakes
• Modifies proteins and lipids
– Packages them in vesicles
– Receives vesicles from ER on cis face
– Prepares for “shipment” in vesicles
from trans face
• Within cell
• Export from cell (secretion, exocytosis)
Endomembrane
System:
Golgi Apparatus
Endomembrane • Membrane-bound vesicles (not in
System: plants)
– Produced by the Golgi apparatus
Lysosome
– Low pH
– Contain lytic enzymes which mostly
act within the cell
• Digestion of large molecules
• Recycling of cellular resources
• Apoptosis (programmed cell death, like
tadpole losing tail)
• Autophagy: removal of old organelles
• Autolysis: destruction of the cell
Endomembrane • Some operate in extracellular
System: digestion
– One example occurs during
Lysosome
fertilization. The head of a sperm cell
releases lysosomal enzymes that aid
its penetration of the oocyte by
dissolving its protective coating in a
process called the acrosomal reaction
Endomembrane • Some genetic diseases
System: – Caused by defect in lysosomal enzyme
– Lysosomal storage diseases (Tay-
Lysosome
Sachs) instance, Tay-Sachs disease,
which most often affects children of
Ashkenazi (eastern European Jewish)
descent, is an inherited condition
characterized by the absence of a single
lysosomal enzyme called Hex A. This
enzyme normally breaks down a
membrane glycolipid called ganglioside
GM2 that is especially prevalent in nerve
cells.
Endomembrane • Some genetic diseases (cont’d)
System: – As the excess ganglioside GM2
accumulates, the nerve cells function
Lysosome
less efficiently. Children with Tay-
Sachs disease typically experience
seizures and muscle rigidity. They
gradually become blind, demented,
and uncoordinated and usually die
before the age of 5. Tests can now
reveal whether an adult is a carrier of
the defective gene.
Endomembrane
System:
Lysosome
Endomembrane
System:
Summary of ER, Golgi
Apparatus and
Lysosome
1. Proteins synthesized by ribosomes on the rough ER are
surrounded by a piece of the ER membrane, which eventually buds
from the membrane surface to form transport vesicles.
2-46
2. Transport vesicles move toward the entry face of
the Golgi complex.
2-47
6. Within the exit face cisternae,
5. The products of the the products are further modified
medial cisternae move into and are sorted and packaged.
the lumen of the exit face.
2-48
7. Some of the processed proteins leave
the exit face and are stored in secretory
vesicles. These vesicles deliver the
proteins to the plasma membrane, where
they are discharged by exocytosis into the
extracellular fluid. For example, certain
pancreatic cells release the hormone
insulin in this way. 2-49
8. Other processed proteins leave the exit
face in membrane vesicles that deliver their
contents to the plasma membrane for
incorporation into the membrane. In doing
so, the Golgi complex adds new segments
of plasma membrane as existing segments
are lost and modifies the number and
distribution of membrane molecules.
2-50
9. Finally, some processed proteins
leave the exit face in transport
vesicles that will carry the proteins to
another cellular destination.
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Chromosome
• The chromosome is the most organized level of genetic
material.
• Each chromosome contains a single, long molecule of DNA
and associated proteins.
• Chromosomes become visible only when the cell is dividing.
Chromatin
• Long thread-like material of eukaryotic chromosomes.
• During interphase it is dispersed and fills most of the
nucleus; during nuclear division it condenses into compact
chromosomes.
Nucleosome
• the basic unit of the chromatin which consists of:
– a protein core of eight histone molecules (two each of histone H2A,
H2B, H3 and H4) and
– a molecule of DNA wound around the protein core
• connected to another nucleosome by linker DNA, which then
gives a ”beads on a string” appearance
DNA (Deoxyribonucleic acid)
• Double-helix structure which contains and transmits genetic
information and determines the properties or characteristics
(phenotype) of living organisms
• the genetic material is the DNA, except in some viruses
where RNA is the genetic material
• uncoiled DNA of a human chromosome has an average
length of 5 cm
Gene
• Basic unit of heredity
• A segment of the DNA strand which contains the code for a
particular protein
• The phenotype of a cell and the entire organism depends on
its genes or DNA
Nuclear Processes
• Central Dogma
1. DNA Replication
2. Transcription
3. Translation
• Cell Cycle
1. Mitosis
2. Meiosis
Central Dogma
• a statement of how process involving the DNA gave rise to
the synthesis of a protein
• involves the following processes:
1. DNA
Replication
• the process of faithfully copying
DNA to produce two DNA
molecules identical to the parent
DNA
• DNA replicates in a semi-
conservative manner
2. Transcription
• the synthesis of RNA from a DNA
template
2. Transcription
• Three types of RNA which can
be synthesized:
1. Messenger RNA (mRNA) –
provides the template for protein
synthesis
2. Transfer RNA (tRNA) – transfers
amino acids from the cytoplasm to
the ribosomes
3. Ribosomal RNA (rRNA) – are
complexed with ribosomal
proteins to form ribosomes
3. Translation
• the synthesis of protein from
mRNA
Cell Cycle
• The life cycle of the cell is called the cell cycle.
• New cells must be made continuously in order for an
organism to grow and replace its damaged cells.
• Two types of cell division:
– Mitosis: is the cell division process that takes place in somatic cells.
– Meiosis: is the cell division process that takes place in gonads to
produce gametes.
96
Interphase
1. G1 Phase
• Cell recovers from previous
division
• Cell increases in size
• Cell doubles its organelles
Interphase
2. S Phase
• Each chromosome is composed
of one DNA double helix
• DNA replication then occurs
Interphase
3. G2 Phase
• Stage from the complexation of
DNA replication to the onset of
mitosis
• Cell finishes growing
• Two centrosomes appeared in
the cytoplasm
A. Mitosis
1. Prophase
• The first and longest stage of
mitosis
• Chromatin threads condense into
chromosomes
• Chromosomes are made up of
two threads called chromatids
• Chromatids are held together by
the centromere
A. Mitosis
1. Prophase
• Nucleolus disappears
• Nuclear membrane fragments
• Chromosomes are visible
• Centrosomes separate from one
another
• The mitotic spindle forms
A. Mitosis
2. Metaphase
• Prometaphase: Kinetochore of
each chromatid is attached to
spindle fiber
• Chromosomes cluster at the
middle of the cell
• Centromeres are aligned along
the equator
A. Mitosis
3. Anaphase
• Third and shortest stage of
mitosis
• Centromeres of chromosomes
split resulting in doubled number
of chromosomes (4n)
• Daughter chromosomes move
toward the spindle poles
• Each pole receives the same
number and kinds of
chromosomes as the parent cell
A. Mitosis
4. Telophase
• Begins as chromosomal
movement stops
• New nuclear membrane forms
• Nucleolus reappears
• Chromosomes at opposite poles
of the cell uncoil and resume their
thread-like extended-chromatin
form
Cytokinesis
• completes the division of the
cell into two daughter cells
• Daughter cells are completely
separated from each other
• In animal cells, cleavage
furrow is formed during
telophase
• In plant cells, a cell plate is
formed which divides the cell
into two
Functions of Mitosis
• It permits cell growth and repair
• It allows a cut to heal or a broken bone to mend
• It is critical to the development of an organism
Mitosis
Interphase
Sister chromatids
separate
DNA Occurs during interphase before Occurs during interphase before meiosis I begins
replication mitosis begins
Number of One, including prophase, metaphase, Two, each including prophase, metaphase, anaphase, and
divisions anahase, and telophase telophase
Synapsis of Does not occur Occurs during prophase I along with crossing over
homologous between nonsister chromatids; resulting chiasmata
chromosomes hold pairs together due to sister chromatid cohesion
Number of Two, each diploid (2n) and genetically Four, each haploid (n), containing half as many chromosomes
daughter cells identical to the parent cell as the parent cell; genetically different from the parent
and genetic cell and from each other
composition
Role in the Enables multicellular adult to arise from Produces gametes; reduces number of chromosomes by half
animal body zygote; produces cells for growth, repair, and introduces genetic variability amoung the gametes
and, in some species, asexual reproduction
123
THE PLASMA MEMBRANE
Structure and Function
• The plasma membrane is common to all cells
• Separates:
• Internal living cytoplasmic from external environment of cell
• Phospholipid bilayer:
• External surface lined with hydrophilic polar heads
• Cytoplasmic surface lined with hydrophilic polar heads
• Nonpolar, hydrophobic, fatty-acid tails sandwiched in between
125
Phospholipid & Cholesterol
Molecules
126
Fluid-Mosaic Model
Three components:
• Basic membrane referred to as phospholipid bilayer
• Protein molecules which float around like icebergs on a sea, and
some has carbohydrate chains attached
• Peripheral proteins are found on the inner membrane surface
• Integral proteins are partially or wholly embedded (transmembrane) in the
membrane
• Cholesterol
PLASMA
MEMBRANE
Structure
Transmembrane
Protein
Structure
Functions of Membrane Proteins
1. Channel Proteins
• Tubular
• Allow passage of molecules through membrane
2. Carrier Proteins
• Combine with substance to be transported
• Assist passage of molecules through membrane
5. Enzymatic Proteins
• Carry out metabolic reactions directly
131
132
Types of Transport: Active vs.
Passive
• Plasma membrane is differentially (selectively) permeable
• Allows some material to pass
• Inhibits passage of other materials
133
Types of Transport: Active vs.
Passive
• Passive Transport
• No ATP requirement
• Molecules follow concentration gradient
• Active Transport
• Requires carrier protein
• Requires energy in form of ATP
134
135
Types of Transport: Diffusion
• A solution consists of:
• A solvent (liquid) , and
• A solute (dissolved solid)
• Diffusion
– Net movement of solute molecules down a concentration gradient
– More move from high to low concentration than vice versa
136
137
Factors Affecting the Diffusion
Rate of Substances
• Steepness of the concentration gradient. The greater the
difference in concentration between the two sides of the
membrane, the higher the rate of diffusion.
• Temperature. The higher the temperature, the faster the rate
of diffusion.
• Mass of the diffusing substance. The larger the mass of the
diffusing particle, the slower its diffusion rate. Smaller
molecules diffuse more rapidly than larger ones.
Factors Affecting the Diffusion
Rate of Substances
• Surface area. The larger the membrane surface area
available for diffusion, the faster the diffusion rate.
• Diffusion distance. The greater the distance over which
diffusion must occur, the longer it takes. Diffusion across a
plasma membrane takes only a fraction of a second because
the membrane is so thin.
Types of Transport: Osmosis
• Special case of diffusion
140
Types of Transport: Osmosis
• Water diffuses both ways across membrane but solute can’t
141
142
Types of Transport: Osmosis
Tonicity: strength of a solution with respect to osmotic pressure.
1. Isotonic Solution
• Solute and water concentrations equal on both sides of membrane
143
Types of Transport: Osmosis
2. Hypotonic Solution
• Concentration of solute lower than on other side
• Cells placed in a hypotonic solution will swell
• May cause cells to break – Lysis
3. Hypertonic Solution
• Concentration of solute higher than on other side
• Cells placed in a hypertonic solution will shrink – Plasmolysis
144
145
Types of Transport: Carrier
Proteins
• Facilitated Transport
• Small molecules can’t get through membrane lipids
• It combines with carrier proteins and follow concentration gradient
• Active Transport
• Small molecules move against concentration gradient
• They combine with carrier proteins
• Requires energy
146
147
The Sodium-Potassium Pump
148
Active Transport
• Antiporters: carry two
substances across the
membrane in opposite
directions.
Active Transport
• Symporters: carry two
substances across the
membrane in the same
direction.
Types of Transport: Membrane-
Assisted Transport
• Macromolecules transported into or out of the cell inside
vesicles
1. Exocytosis – Vesicles fuse with plasma membrane and secrete
contents
2. Endocytosis – Cells engulf substances into pouch which
becomes a vesicle
a. Phagocytosis – Large, solid material into vesicle
b. Pinocytosis – Liquid or small, solid particles go into vesicle
c. Receptor-Mediated – Specific form of pinocytosis using a coated pit
151
Exocytosis
152
Endocytosis
153
Cell Surface Modifications:
Junctions
• Junctions between cells
1. Adhesion Junctions
• Intercellular filaments between
cells
2. Tight Junctions
• Form impermeable barriers
3. Gap Junctions
• Plasma membrane channels are
joined (allows communication)
154
Cell Surface Modifications
• Extracellular Matrix
• External meshwork of polysaccharides and proteins found in close
association with the cell that produced them
• Plant Cell Walls
• Plants have freely permeable cell wall, with cellulose as the main
component
• Plasmodesmata penetrate cell wall
• Each contains a strand of cytoplasm
• Allow passage of material between cells
155
Extracellular Matrix
156
Plasmodesmata
157
III. Cellular Organization
Lloyd O. Balinado, DBS, CvSU