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AP Biology - 7.9 - Phylogeny

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Topic 7 – Natural Selection

Changes in the genetic makeup of a


population over time is evolution.
7.9 – Phylogeny
Life continues to evolve within a changing
environment
7.9 – Phylogeny
• Describe the types of evidence that can be used
to infer an evolutionary relationship.
• Explain how a phylogenetic tree and/or
cladogram can be used to infer evolutionary
relatedness
AP BIOLOGY Phylogeny is the branch of biology that studies the evolutionary 4
history of a species. This is done using morphological, chemical and
7.9
genetic evidence.
Diagrams
Key Terms

Phylogeny

https://upload.wikimedia.org/wikipedia/commons/9/95/Ganong-Cactaceae-Phylogenetic_Tree_1898.png
AP BIOLOGY Phylogenetic trees are diagrams that represent evolutionary 5
relationships amongst organisms. The branches are proportional to
7.9
the amount of change or evolutionary time that has occurred.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

https://upload.wikimedia.org/wikipedia/commons/7/70/Phylogenetic_tree.svg
AP BIOLOGY Cladistics is a system of classifying organisms based on shared 6
characteristics derived from common ancestry. A clade is a group of
7.9 organisms that evolved from a common ancestor and are related.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

https://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Clade-grade_II.svg
AP BIOLOGY Clades include all species 7
currently alive, together with
7.9 their ancestral species and any
Diagrams species that evolved and
became extinct.
Key Terms
Some clades can include many
Phylogeny
species, while others can have
Phylogenetic just a few.
Tree
The Ginkgo biloba is the only
Cladistics member of its clade while birds
form a large clade with
Clade
thousands of members.

https://s-media-cache-ak0.pinimg.com/originals/f4/b2/db/f4b2dba017458b6e6a90f7633dcde5f2.jpg
AP BIOLOGY Cladograms are tree diagrams based on similarities and differences 8
between clade species. They show the most probable sequence of
7.9 divergence in clades.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

https://s3.amazonaws.com/classconnection/216/flashcards/4943216/jpg/26_11bconstructphylotree-l-14925FC89025187F6F6.jpg
AP BIOLOGY The structure of cladograms is now determined by computer 9
programs. They calculate how species could have evolved with the
7.9 fewest number of changes in DNA or protein sequence
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

http://www.vanderbilt.edu/peabody/novick/cladograms.jpg
AP BIOLOGY Humans can also be 10
studied using cladograms.
7.9
DNA analysis has shown
Diagrams
that our closest relatives
Key Terms are the bonobo and
chimpanzee.
Phylogeny
The red box to the left
Phylogenetic
shows the clade of
Tree
primates.
Cladistics

Clade

Cladogram

http://d3rzbccgedqypw.cloudfront.net/content/jbjsam/91/Supplement_4/26/F1.large.jpg
AP BIOLOGY In cladograms, there are several types of groups that can be 11
depicted:
7.9
Diagrams • Paraphyletic groups are groups • Monophyletic groups are
that include have a common groups of species with a
Key Terms ancestor but not all descendents common ancestral species.
Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram
• Polyphyletic groups are groups that do not have a common
ancestor. More research is needed to determine relatedness

http://d3rzbccgedqypw.cloudfront.net/content/jbjsam/91/Supplement_4/26/F1.large.jpg
AP BIOLOGY Phylogenetic trees and 12
cladograms can represent traits
7.9
that have either been derived or
Diagrams lost due to evolution.

Key Terms • Derived traits –

Phylogeny
Traits gained during evolution
Phylogenetic that ancestral species did not
Tree have

Cladistics • Lost traits –

Clade
Traits lost during evolution.
Cladogram They are only seen in
ancestral species.
Lost/Derived
Traits
http://maggiesscienceconnection.weebly.com/uploads/5/1/0/5/5105330/279677550_orig.jpg
AP BIOLOGY 13
For example, the number
7.9 of heart chambers has
changed over time.
Diagrams
The cladogram here
Key Terms
shows:
Phylogeny
• 3-chambered hearts
Phylogenetic emerged ~4-500 mya
Tree
• 4-chambered hearts
Cladistics emerged 3-400 mya

Clade

Cladogram

Lost/Derived
Traits
http://maggiesscienceconnection.weebly.com/uploads/5/1/0/5/5105330/279677550_orig.jpg
AP BIOLOGY Diagrams can also show the emergence of opposable thumbs in 14
various species of primates.
7.9
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

Lost/Derived
Traits
https://s-media-cache-ak0.pinimg.com/originals/63/37/9a/63379aa03e55ba77bf82759f356a9a92.jpg
AP BIOLOGY Since trees and cladograms show changes in species, they also 15
illustrate when speciation has occurred. In cladograms, speciation
7.9 branch points are called nodes and illustrate when species diverge.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

Lost/Derived
Traits
https://s3.amazonaws.com/classconnection/216/flashcards/4943216/jpg/26_un02summary_c1-l-14925FD281B24AA1CDF.jpg
AP BIOLOGY The pattern of branching in cladograms is assumed to match 16
evolutionary origins of each species. The closer two species are in a
7.9 diagram, the sooner they had a common ancestor.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

http://genealogyreligion.net/wp-content/uploads/2013/03/Primate-clade-tree.jpg
AP BIOLOGY Phylogenetic trees and 17
cladograms can be
7.9
constructed from
Diagrams morphological similarities.

Key Terms The graph here shows


differences between a set
Phylogeny
of organisms.
Phylogenetic
Tree This information is usd to
construct the cladogram
Cladistics below.

Clade

Cladogram

http://science.kennesaw.edu/~jdirnber/Bio2108/Lecture/LecPhylogeny/26_Labeled_Images/26_15ParsimonyExample_4-L.jpg
AP BIOLOGY They can also be made from DNA and protein sequence similarity. 18
This is done by using computer programs that measure and
7.9
represent relatedness among organisms.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

http://science.kennesaw.edu/~jdirnber/Bio2108/Lecture/LecPhylogeny/26_Labeled_Images/26_15ParsimonyExample_4-L.jpg
AP BIOLOGY Changes in DNA and protein 19
sequences are the result of
7.9 mutations. These occur at a
Diagrams roughly constant rate and
accumulate over time.
Key Terms
This means DNA can be used as
Phylogeny
a molecular clock.
Phylogenetic
By observing the differences
Tree
between DNA sequences,
Cladistics scientists can estimate the
point at which populations
Clade
diverged.
Cladogram

http://faculty.uca.edu/johnc/cladogram_c.jpg
AP BIOLOGY As shown here, the use of DNA as a 20
clock can help in the constructing a
7.9 cladogram of species.
Diagrams
This cladogram shows the timeline
Key Terms of divergence of members in the
Felidae (cat) family.
Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

http://schoolbag.info/biology/living/living.files/image478.jpg
AP BIOLOGY The use of molecular clocks 21
can also enhance the
7.9 information shown in a
Diagrams cladogram by giving an
approximate timeline.
Key Terms
Species separated by few
Phylogeny
nodes diverged later and so
Phylogenetic are more related.
Tree
Species separated by many
Cladistics nodes diverged further apart
and so are less related.
Clade

Cladogram

https://sites.google.com/a/canacad.ac.jp/sl-hl-1-biology-4-ferguson/_/rsrc/1403598223535/unit-11-ecology/5-4-cladistics/primate%20cladogram.jpg
AP BIOLOGY Phylogenetic trees and diagrams are hypotheses and so are 22
constantly being revised. Changes are based on biological data,
7.9
mathematical/computational ideas and emerging knowledge.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

http://maggiesscienceconnection.weebly.com/uploads/5/1/0/5/5105330/279677550_orig.jpg
AP BIOLOGY Problems distinguishing between the types of structures have 23
sometimes led to mistakes in classification. So, DNA and amino acid
7.9 sequences are now used over morphology.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

https://thegenomestale.files.wordpress.com/2012/05/f1-large.jpg
AP BIOLOGY The recent development of sequencing technologies have allowed 24
taxonomists to correctly construct cladograms. When clades based
7.9 on morphology are incorrect, the species can be reclassified.
Diagrams
Key Terms

Phylogeny

Phylogenetic
Tree

Cladistics

Clade

Cladogram

http://biology-forums.com/gallery/18099_27_04_12_2_21_45.jpeg
AP BIOLOGY For example, the figworts were25
originally the 8th largest family
7.9 of angiosperm and included 16
Diagrams genera.

Key Terms Using cladistics, taxonomists


studied the chloroplast DNA
Phylogeny
sequence of the family.
Phylogenetic
They discovered that five
Tree
clades had accidentally been
Cladistics combined into one family.

Clade So, a major reclassification


was carried out.
Cladogram

http://www.hopspress.com/Books/Images/Scrophulariaceae.jpg
AP BIOLOGY As a result of reclassification: 26

7.9 • 2 families were merged


Diagrams • 50 genera moved to plantain
Key Terms family

Phylogeny • 12 genera moved to


boomrape family
Phylogenetic
Tree • 13 genera moved to a newly
created family
Cladistics
• 2 genera moved to another
Clade
new family
Cladogram
Figworts were originally the 8th
largest angiosperm family, but
now are the 36th largest.
http://www.hopspress.com/Books/Images/Scrophulariaceae.jpg
AP BIOLOGY • Khan Academy – Phylogenetic Trees 27

7.9 https://www.youtube.com/watch?v=6_XMKmFQ_w8

VIDEOS • Bozeman Science – Cladograms


https://www.youtube.com/watch?v=ouZ9zEkxGWg

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