AP Biology - 7.9 - Phylogeny
AP Biology - 7.9 - Phylogeny
AP Biology - 7.9 - Phylogeny
Phylogeny
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AP BIOLOGY Phylogenetic trees are diagrams that represent evolutionary 5
relationships amongst organisms. The branches are proportional to
7.9
the amount of change or evolutionary time that has occurred.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
https://upload.wikimedia.org/wikipedia/commons/7/70/Phylogenetic_tree.svg
AP BIOLOGY Cladistics is a system of classifying organisms based on shared 6
characteristics derived from common ancestry. A clade is a group of
7.9 organisms that evolved from a common ancestor and are related.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
https://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Clade-grade_II.svg
AP BIOLOGY Clades include all species 7
currently alive, together with
7.9 their ancestral species and any
Diagrams species that evolved and
became extinct.
Key Terms
Some clades can include many
Phylogeny
species, while others can have
Phylogenetic just a few.
Tree
The Ginkgo biloba is the only
Cladistics member of its clade while birds
form a large clade with
Clade
thousands of members.
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AP BIOLOGY Cladograms are tree diagrams based on similarities and differences 8
between clade species. They show the most probable sequence of
7.9 divergence in clades.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
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AP BIOLOGY The structure of cladograms is now determined by computer 9
programs. They calculate how species could have evolved with the
7.9 fewest number of changes in DNA or protein sequence
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
http://www.vanderbilt.edu/peabody/novick/cladograms.jpg
AP BIOLOGY Humans can also be 10
studied using cladograms.
7.9
DNA analysis has shown
Diagrams
that our closest relatives
Key Terms are the bonobo and
chimpanzee.
Phylogeny
The red box to the left
Phylogenetic
shows the clade of
Tree
primates.
Cladistics
Clade
Cladogram
http://d3rzbccgedqypw.cloudfront.net/content/jbjsam/91/Supplement_4/26/F1.large.jpg
AP BIOLOGY In cladograms, there are several types of groups that can be 11
depicted:
7.9
Diagrams • Paraphyletic groups are groups • Monophyletic groups are
that include have a common groups of species with a
Key Terms ancestor but not all descendents common ancestral species.
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
• Polyphyletic groups are groups that do not have a common
ancestor. More research is needed to determine relatedness
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AP BIOLOGY Phylogenetic trees and 12
cladograms can represent traits
7.9
that have either been derived or
Diagrams lost due to evolution.
Phylogeny
Traits gained during evolution
Phylogenetic that ancestral species did not
Tree have
Clade
Traits lost during evolution.
Cladogram They are only seen in
ancestral species.
Lost/Derived
Traits
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AP BIOLOGY 13
For example, the number
7.9 of heart chambers has
changed over time.
Diagrams
The cladogram here
Key Terms
shows:
Phylogeny
• 3-chambered hearts
Phylogenetic emerged ~4-500 mya
Tree
• 4-chambered hearts
Cladistics emerged 3-400 mya
Clade
Cladogram
Lost/Derived
Traits
http://maggiesscienceconnection.weebly.com/uploads/5/1/0/5/5105330/279677550_orig.jpg
AP BIOLOGY Diagrams can also show the emergence of opposable thumbs in 14
various species of primates.
7.9
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
Lost/Derived
Traits
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AP BIOLOGY Since trees and cladograms show changes in species, they also 15
illustrate when speciation has occurred. In cladograms, speciation
7.9 branch points are called nodes and illustrate when species diverge.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
Lost/Derived
Traits
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AP BIOLOGY The pattern of branching in cladograms is assumed to match 16
evolutionary origins of each species. The closer two species are in a
7.9 diagram, the sooner they had a common ancestor.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
http://genealogyreligion.net/wp-content/uploads/2013/03/Primate-clade-tree.jpg
AP BIOLOGY Phylogenetic trees and 17
cladograms can be
7.9
constructed from
Diagrams morphological similarities.
Clade
Cladogram
http://science.kennesaw.edu/~jdirnber/Bio2108/Lecture/LecPhylogeny/26_Labeled_Images/26_15ParsimonyExample_4-L.jpg
AP BIOLOGY They can also be made from DNA and protein sequence similarity. 18
This is done by using computer programs that measure and
7.9
represent relatedness among organisms.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
http://science.kennesaw.edu/~jdirnber/Bio2108/Lecture/LecPhylogeny/26_Labeled_Images/26_15ParsimonyExample_4-L.jpg
AP BIOLOGY Changes in DNA and protein 19
sequences are the result of
7.9 mutations. These occur at a
Diagrams roughly constant rate and
accumulate over time.
Key Terms
This means DNA can be used as
Phylogeny
a molecular clock.
Phylogenetic
By observing the differences
Tree
between DNA sequences,
Cladistics scientists can estimate the
point at which populations
Clade
diverged.
Cladogram
http://faculty.uca.edu/johnc/cladogram_c.jpg
AP BIOLOGY As shown here, the use of DNA as a 20
clock can help in the constructing a
7.9 cladogram of species.
Diagrams
This cladogram shows the timeline
Key Terms of divergence of members in the
Felidae (cat) family.
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
http://schoolbag.info/biology/living/living.files/image478.jpg
AP BIOLOGY The use of molecular clocks 21
can also enhance the
7.9 information shown in a
Diagrams cladogram by giving an
approximate timeline.
Key Terms
Species separated by few
Phylogeny
nodes diverged later and so
Phylogenetic are more related.
Tree
Species separated by many
Cladistics nodes diverged further apart
and so are less related.
Clade
Cladogram
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AP BIOLOGY Phylogenetic trees and diagrams are hypotheses and so are 22
constantly being revised. Changes are based on biological data,
7.9
mathematical/computational ideas and emerging knowledge.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
http://maggiesscienceconnection.weebly.com/uploads/5/1/0/5/5105330/279677550_orig.jpg
AP BIOLOGY Problems distinguishing between the types of structures have 23
sometimes led to mistakes in classification. So, DNA and amino acid
7.9 sequences are now used over morphology.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
https://thegenomestale.files.wordpress.com/2012/05/f1-large.jpg
AP BIOLOGY The recent development of sequencing technologies have allowed 24
taxonomists to correctly construct cladograms. When clades based
7.9 on morphology are incorrect, the species can be reclassified.
Diagrams
Key Terms
Phylogeny
Phylogenetic
Tree
Cladistics
Clade
Cladogram
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AP BIOLOGY For example, the figworts were25
originally the 8th largest family
7.9 of angiosperm and included 16
Diagrams genera.
http://www.hopspress.com/Books/Images/Scrophulariaceae.jpg
AP BIOLOGY As a result of reclassification: 26
7.9 https://www.youtube.com/watch?v=6_XMKmFQ_w8