Distributed

Software Engineering
Hadoop and Spark

David A. Wheeler
SWE 622
George Mason University
 outline
Apache Hadoop
Hadoop Distributed File System (HDFS)
MapReduce
Apache Spark

These are changing rapidly – active area of use and

growth. These are big hot areas today
“Silicon Valley investors have poured $2 billion into
companies based on the data-collection software known as
Hadoop.”– Wall Street Journal, June 15, 2015
IBM to invest few hundred million dollars a year in Spark
Not including investments by Facebook, Google, Yahoo!,
Baidu, and others

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Apache Hadoop: Purpose
“Framework that allows distributed processing of large
data sets across clusters of computers…
using simple programming models.
It is designed to scale up from single servers to
thousands of machines, each offering local computation
and storage.
Rather than rely on hardware to deliver high-availability,
the library itself is designed to detect and handle failures
at the application layer, so delivering a highly-available
service on top of a cluster of computers, each of which
may be prone to failures.”
Source: https://hadoop.apache.org/
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Apache Hadoop – key
components
Hadoop Common: Common utilities
(Storage Component) Hadoop Distributed File System (HDFS): A
distributed file system that provides high-throughput access
Many other data storage approaches also in use
E.G., Apache Cassandra, Apache Hbase, Apache Accumulo (NSA-contributed)
(Scheduling) Hadoop YARN: A framework for job scheduling and
cluster resource management
(Processing) Hadoop MapReduce (MR2): A YARN-based system for
parallel processing of large data sets
Other execution engines increasingly in use, e.g., Spark
Note:
All of these key components are OSS under Apache 2.0 license
Related: Ambari, Avro, Cassandra, Chukwa, Hbase, Hive, Mahout, Pig, Tez,
Zookeeper

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Hadoop Distributed File System
(HDFS) (1)
Inspired by “Google File System”
Stores large files (typically gigabytes-terabytes) across multiple
machines, replicating across multiple hosts
Breaks up files into fixed-size blocks (typically 64 MiB), distributes blocks
The blocks of a file are replicated for fault tolerance
The block size and replication factor are configurable per file
Default replication value (3) - data is stored on three nodes: two on the same
rack, and one on a different rack
File system intentionally not fully POSIX-compliant
Write-once-read-many access model for files. A file once created, written, and
closed cannot be changed. This assumption simplifies data coherency issues and
enables high throughput data access
Intend to add support for appending-writes in the future
Can rename & remove files
“Namenode” tracks names and where the blocks are

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Hadoop Distributed File System
(HDFS) (2)
Hadoop can work with any distributed file system but this loses
locality
To reduce network traffic, Hadoop must know which servers are
closest to the data; HDFS does this
Hadoop job tracker schedules jobs to task trackers with an
awareness of the data location
For example, if node A contains data (x,y,z) and node B contains data
(a,b,c), the job tracker schedules node B to perform tasks on (a,b,c)
and node A would be scheduled to perform tasks on (x,y,z)
This reduces the amount of traffic that goes over the network and
prevents unnecessary data transfer
Location awareness can significantly reduce job-completion times when
running data-intensive jobs

Source: http://hadoop.apache.org/docs/current/hadoop-project-dist/hadoop-hdfs/HdfsDesign.html

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Handling structured data
Data often more structured
Google BigTable (2006 paper)
Designed to scale to Petabytes, 1000s of machines
Maps two arbitrary string values (row key and column key) and
timestamp into an associated arbitrary byte array
Tables split into multiple “tablets” along row chosen so tablet will be
~200 megabytes in size (compressed when necessary)
Data maintained in lexicographic order by row key; clients can exploit
this by selecting row keys for good locality (e.g., reversing hostname in
URL)
Not a relational database; really a sparse, distributed multi-dimensional
sorted map
Implementations of approach include: Apache Accumulo (from NSA;
cell-level access labels), Apache Cassandra, Apache Hbase, Google Cloud
BigTable (released 2005)
Sources: https://en.wikipedia.org/wiki/BigTable; “Bigtable…” by Chang
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(Parallel) MapReduce
MapReduce is a programming model for processing and
generating large data sets with a parallel, distributed
algorithm on a cluster
Programmer defines two functions, map & reduce
Map(k1,v1) → list(k2,v2). Takes a series of key/value pairs,
processes each, generates zero or more output key/value pairs
Reduce(k2, list (v2)) → list(v3). Executed once for each unique
key k2 in the sorted order; iterate through the values associated
with that key and produce zero or more outputs
System “shuffles” data between map and reduce (so
“reduce” function has whole set of data for its given
keys) & automatically handles system failures, etc.

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 MapReduce process figure
Machine 1 Machine 2 … Machine n
(k1, v1) (k1, v1) (k1, v1)

Map Map Map

List of (k2, v2) List of (k2, v2) List of (k2, v2)

(Optional) Combine Combine Combine

List of (k2, v2) List of (k2, v2) List of (k2, v2)
SHUFFLE
k2, list (v2) k2, list (v2) k2, list (v2)

Reduce Reduce Reduce

list(v3) list(v3) list(v3)
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MapReduce: Word Count
Example (Pseudocode)
map(String input_key, String input_value):
// input_key: document name
// input_value: document contents
for each word w in input_value:
EmitIntermediate(w, "1");

reduce(String output_key, Iterator intermediate_values):

// output_key: a word
// output_values: a list of counts
int result = 0; Any 12
for each v in intermediate_values: Ball 1
result += ParseInt(v); Computer 3
Emit(AsString(result));
…

http://research.google.com/archive/mapreduce-osdi04-slides/index-auto-0004.html

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MapReduce Combiner
Can also define an option function “Combiner” (to
optimize bandwidth)
If defined, runs after Mapper & before Reducer on every node
that has run a map task
Combiner receives as input all data emitted by the Mapper
instances on a given node
Combiner output sent to the Reducers, instead of the output
from the Mappers
Is a "mini-reduce" process which operates only on data
generated by one machine
If a reduce function is both commutative and
associative, then it can be used as a Combiner as well
Useful for word count Source:
– combine local counts
https://developer.yahoo.com/hadoop/tutorial/module4.html

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MapReduce problems &
potential solution
MapReduce problems:
Many problems aren’t easily described as
map-reduce
Persistence to disk typically slower than in-
memory work
Alternative: Apache Spark
a general-purpose processing engine that can
be used instead of MapReduce

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Apache Spark
Processing engine; instead of just “map” and “reduce”, defines a
large set of operations (transformations & actions)
Operations can be arbitrarily combined in any order
Open source software
Supports Java, Scala and Python
Original key construct: Resilient Distributed Dataset (RDD)
Original construct, so we’ll focus on that first
More recently added: DataFrames & DataSets
Different APIs for aggregate data

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Resilient Distributed Dataset
(RDD) – key Spark construct
RDDs represent data or transformations on data
RDDs can be created from Hadoop InputFormats (such
as HDFS files), “parallelize()” datasets, or by
transforming other RDDs (you can stack RDDs)
Actions can be applied to RDDs; actions force
calculations and return values
Lazy evaluation: Nothing computed until an action
requires it
RDDs are best suited for applications that apply the
same operation to all elements of a dataset
Less suitable for applications that make asynchronous fine-
grained updates to shared state
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Spark example #1 (Scala)
// “sc” is a “Spark context” – this transforms the file into an RDD
val textFile = sc.textFile("README.md")
// Return number of items (lines) in this RDD; count() is an action
textFile.count()
// Demo filtering. Filter is a tranform. By itself this does no real work
val linesWithSpark = textFile.filter(line => line.contains("Spark"))
// Demo chaining – how many lines contain “Spark”? count() is an action.
textFile.filter(line => line.contains("Spark")).count()
// Length of line with most words. Reduce is an action.
textFile.map(line => line.split(" ").size).reduce((a, b) => if (a > b) a else b)
// Word count – traditional map-reduce. collect() is an action
val wordCounts = textFile.flatMap(line => line.split(" ")).map(word => (word,
1)).reduceByKey((a, b) => a + b)
wordCounts.collect()
Source: https://spark.apache.org/docs/latest/quick-start.html

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Spark example #2 (Python)
# Estimate π (compute-intensive task).
# Pick random points in the unit square ((0, 0) to (1,1)),
# See how many fall in the unit circle. The fraction should be π / 4
# Note that “parallelize” method creates an RDD
def sample(p):
x, y = random(), random()
return 1 if x*x + y*y < 1 else 0

count = spark.parallelize(xrange(0, NUM_SAMPLES)).map(sample) \

.reduce(lambda a, b: a + b)
print "Pi is roughly %f" % (4.0 * count / NUM_SAMPLES)

Source: https://spark.apache.org/docs/latest/quick-start.html

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Sample Spark transformations
map(func): Return a new distributed dataset formed by passing each
element of the source through a function func.
filter(func): Return a new dataset formed by selecting those elements of
the source on which func returns true
union(otherDataset): Return a new dataset that contains the union of the
elements in the source dataset and the argument.
intersection(otherDataset): Return a new RDD that contains the intersection
of elements in the source dataset and the argument.
distinct([numTasks])): Return a new dataset that contains the distinct
elements of the source dataset
join(otherDataset, [numTasks]): When called on datasets of type (K, V) and
(K, W), returns a dataset of (K, (V, W)) pairs with all pairs of elements for
each key. Outer joins are supported through leftOuterJoin, rightOuterJoin,
and fullOuterJoin.

Source: https://spark.apache.org/docs/latest/programming-guide.html

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Sample Spark Actions
reduce(func): Aggregate the elements of the dataset using a
function func (which takes two arguments and returns one). The
function should be commutative and associative so that it can be
computed correctly in parallel.
collect(): Return all the elements of the dataset as an array at the
driver program. This is usually useful after a filter or other operation
that returns a sufficiently small subset of the data.
count(): Return the number of elements in the dataset.

Remember: Actions cause calculations to be performed;

transformations just set things up (lazy evaluation)
Source: https://spark.apache.org/docs/latest/programming-guide.html

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Spark – RDD Persistence
You can persist (cache) an RDD
When you persist an RDD, each node stores any partitions of it that
it computes in memory and reuses them in other actions on that
dataset (or datasets derived from it)
Allows future actions to be much faster (often >10x).
Mark RDD to be persisted using the persist() or cache() methods on
it. The first time it is computed in an action, it will be kept in
memory on the nodes.
Cache is fault-tolerant – if any partition of an RDD is lost, it will
automatically be recomputed using the transformations that
originally created it
Can choose storage level (MEMORY_ONLY, DISK_ONLY,
MEMORY_AND_DISK, etc.)
Can manually call unpersist()
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Spark Example #3 (Python)
# Logistic Regression - iterative machine learning algorithm
# Find best hyperplane that separates two sets of points in a
# multi-dimensional feature space. Applies MapReduce operation
# repeatedly to the same dataset, so it benefits greatly
# from caching the input in RAM

points = spark.textFile(...).map(parsePoint).cache()
w = numpy.random.ranf(size = D) # current separating plane
for i in range(ITERATIONS):
gradient = points.map(
lambda p: (1 / (1 + exp(-p.y*(w.dot(p.x)))) - 1) * p.y * p.x
).reduce(lambda a, b: a + b)
w -= gradient
print "Final separating plane: %s" % w
Source: https://spark.apache.org/docs/latest/quick-start.html

SWE 622 – Distributed Software Systems © Wheeler Hadoop – Spark – 20

Spark Example #3 (Scala)
// Same thing in Scala
val points = spark.textFile(...).map(parsePoint).cache()
var w = Vector.random(D) // current separating plane
for (i <- 1 to ITERATIONS) {
val gradient = points.map(p =>
(1 / (1 + exp(-p.y*(w dot p.x))) - 1) * p.y * p.x
).reduce(_ + _)
w -= gradient
}
println("Final separating plane: " + w)

Source: https://spark.apache.org/docs/latest/quick-start.html

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Spark Example #3 (Java)
// Same thing in Java
class ComputeGradient extends Function<DataPoint, Vector> {
private Vector w;
ComputeGradient(Vector w) { this.w = w; }
public Vector call(DataPoint p) {
return p.x.times(p.y * (1 / (1 + Math.exp(w.dot(p.x))) - 1));
}
}
JavaRDD<DataPoint> points = spark.textFile(...).map(new ParsePoint()).cache();
Vector w = Vector.random(D); // current separating plane
for (int i = 0; i < ITERATIONS; i++) {
Vector gradient = points.map(new ComputeGradient(w)).reduce(new AddVectors());
w = w.subtract(gradient);
}
System.out.println("Final separating plane: " + w);
Source: https://spark.apache.org/docs/latest/quick-start.html

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A tale of multiple APIs
For simplicity I’ve emphasized a single API
set – the original one, RDD
Spark now has three sets of APIs—RDDs,
DataFrames, and Datasets
RDD – In Spark 1.0 release, “lower level”
DataFrames – Introduced in Spark 1.3 release
Dataset – Introduced in Spark 1.6 release
Each with pros/cons/limitations

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 DataFrame & Dataset
DataFrame:
Unlike an RDD, data organized into named columns,
e.g. a table in a relational database.
Imposes a structure onto a distributed collection of
data, allowing higher-level abstraction
Dataset:
Extension of DataFrame API which provides type-
safe, object-oriented programming interface (compile-
time error detection)
Both built on Spark SQL engine & use Catalyst to
generate optimized logical and physical query plan;
both can be converted to an RDD
https://data-flair.training/blogs/apache-spark-rdd-vs-dataframe-vs-dataset/
https://databricks.com/blog/2016/07/14/a-tale-of-three-apache-spark-apis-rdds-dataframes-and-datasets.html

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API distinction: typing
Python & R don’t have compile-time type
safety checks, so only support DataFrame
Error detection only at runtime
Java & Scala support compile-time type
safety checks, so support both DataSet and
DataFrame
Dataset APIs are all expressed as lambda
functions and JVM typed objects
any mismatch of typed-parameters will be
detected at compile time.
https://databricks.com/blog/2016/07/14/a-tale-of-three-apache-spark-apis-rdds-dataframes-and-datasets.html

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Apache Spark: Libraries “on top”
of core that come with it
Spark SQL
Spark Streaming – stream processing of
live datastreams
MLlib - machine learning
GraphX – graph manipulation
extends Spark RDD with Graph abstraction: a
directed multigraph with properties attached
to each vertex and edge.

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Gray sort competition: Winner
Spark-based (previously MR)
Hadoop MR Spark
Record Record (2014)
Data Size 102.5 TB 100 TB Spark-based
Elapsed Time 72 mins 23 mins System
3x faster
# Nodes 2100 206 with 1/10
# Cores 50400 physical 6592 virtualized # of nodes
Cluster disk 3150 GB/s
618 GB/s
throughput (est.)
dedicated data virtualized (EC2) 10Gbps
Network
center, 10Gbps network
Sort rate 1.42 TB/min 4.27 TB/min
Sort rate/node 0.67 GB/min 20.7 GB/min
Sort benchmark, Daytona Gray: sort of 100 TB of data (1 trillion records)
http://databricks.com/blog/2014/11/05/spark-officially-sets-a-new-record-in-large-scale-sorting.html

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Spark vs. Hadoop MapReduce
Performance: Spark normally faster but with caveats
Spark can process data in-memory; Hadoop MapReduce persists
back to the disk after a map or reduce action
Spark generally outperforms MapReduce, but it often needs lots
of memory to do well; if there are other resource-demanding
services or can’t fit in memory, Spark degrades
MapReduce easily runs alongside other services with minor
performance differences, & works well with the 1-pass jobs it
was designed for
Ease of use: Spark is easier to program
Data processing: Spark more general
Maturity: Spark maturing, Hadoop MapReduce mature
“Spark vs. Hadoop MapReduce” by Saggi Neumann (November 24, 2014)
https://www.xplenty.com/blog/2014/11/apache-spark-vs-hadoop-mapreduce/

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AMPLab’s Berkeley Data
Analytics Stack (BDAS)

Don’t need to memorize this figure – the point is to know

that components can be combined to solve big data problems
Source: https://amplab.cs.berkeley.edu/software/

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Mr. Penumbra's 24-Hour
Bookstore
Mr. Penumbra's 24-Hour Bookstore is a 2012
fictional novel by Robin Sloan (American writer)
Widely praised
In best 100 books of 2012 by the San Francisco
Chronicle
New York Times Editor's Choice
New York Times Hardcover Fiction Best Seller list
NPR Hardcover Fiction Bestseller List
Hadoop features prominently in its plot

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For more information
Spark tutorials
http://spark-summit.org/2014/training
“Resilient Distributed Datasets: A Fault-
Tolerant Abstraction for In-Memory
Cluster Computing” by Matei Zaharia et al
https://www.cs.berkeley.edu/~matei/papers/
2012/nsdi_spark.pdf

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