Introductory Chemistry B CH4751 Lecture Notes 11-20: Dr. Erzeng Xue
Introductory Chemistry B CH4751 Lecture Notes 11-20: Dr. Erzeng Xue
Introductory Chemistry B CH4751 Lecture Notes 11-20: Dr. Erzeng Xue
Chemical Reactions
Reaction (2)
at 400K (123C), the reaction (1) will proceed and reaction (2) will not
rxn (2) wont complete (with a feed CH4=CO2=1 & CO=H2=0, max. conv.=63% at 1000K)
The reaction (1) will give out heat, but the reaction (2) will require heat.
Why?
Chemical Reactions
The meanings
Chemical Reactions
(kJ/mol)
(H values for various substances can be found in physical chemistry/Chem Eng handbooks)
In a reaction we are interested in the enthalpy change, DH, which is calculated using
For
DH1000=-801 kJ/mol
DH1000=+260k J/mol
The meaning
Chemical Reactions
The Gibbs Free energy change, DG, in a reaction can be calculated using
Use of DG - Rxn(1) DG <0 at 400 & 1000K-spontaneous, Rxn(2) DG <0 at 400K, will not proceed
for a reaction at
constant T, P,
DGT 0 reaction can proceed (but we dont know how fast it will be!)
Chemical Reactions
1
-77
-89
2
0
0
1
-393
-394
2
-242
-248
1
-393
-394
2
-110
-111
2
0
0
kJ/mol
kJ/mol
Equation to use
Reaction (1)
Reaction (2)
Note: The heat of formation of single element gases (O2, H2, N2 etc) is defined as zero.
6
Chemical Reactions
G400(
-42
-394
-224
-42
-394
-146
kJ/mol
G1000 +19
-396
-193
+19
-396
-200
kJ/mol
Equation to use
Reaction (1)
Reaction (2)
Note: The Gibbs Free Energy of single element gas (O2, H2, N2 etc) is defined as zero.
7
Chemical Reactions
Equations
In both cases G and H values for the reactants and products have to be those at the
reaction temperature, indicated by the subscript.
For common substances, G and H values are given as a function of T in handbooks - okay
For some less common substances, you may only find values at 298K, G298 and H298
How do you convert values of G298 and H298 to those of GT and HT ?
Here is the equations you can use to calculate the values of GT and HT from G298 and H298
0
i ,T
0
i ,298
DC p ,i dT DH phase change,i
T
298
0
where Si0,T S298
DC p ,i
298
dT Qphase
T
Tj
Chemical Reactions
Summary
DGT 0 reaction can proceed (but we dont know how fast it will be!)
Chemical Reactions
Experimental observations
Some reactions will cease without complete consumption of limiting reactant
Without altering reaction conditions (T, P, [ ] etc.) the ratio of conc. remains constant
After a change (T, P, [ ] etc.), the ratio of concs changes to another constant value
[NH4 ][OH ]
at t
constant
[NH3 ][H2O]
[NH4]1
[NH3]1
[NH3]2
Chemical Reactions
Experimental observations
Example 2: 2NO(g) + O2(g) D 2NO2(g)
Again at constant T and P, when t
2
PNO
2
2
NO O2
P P
constant
NO2
NO
O2
The ratio of product concentration to reactants, with the stoichiometry coefficient as the
power index, is called reaction quotient
/ C
NO remaining at equil
/ ppm
NO conversion at equil
/%
50
325
500
96.5
390
100
80.3
22
11
Chemical Reactions
2NO(g) + O2(g) D
2NO2(g)
2
PNO
2
Kp
2
PNO
PO2
NO2
NO
O2
t
Changing T causes both Rforward & Rreverse to change, leading to a new Keq.
If Keq >>1, which means Rforward >> Rreverse, the reaction tends to go forward
If Keq <<1, which means Rforward << Rreverse, the reaction tends to go backward
There is Keq for all reactions (at a constant P) once T and concs are
For a reaction that tends to go complete, Rforward >> Rreverse (Keq >>1).
12
Chemical Reactions
DGT= - RTln(Keq)
13
Chemical Reactions
f (T )
[A]v A [ B]vB PAv A PBvB
2
PNO
2
gas phase
Kp
gas-solid phase
K p PCO2
liquid phase
NH3(aq)+H2O(l) D NH4
[NH4 ][OH ]
Kc
[NH3 ][H2O]
liquid-solid
K c [Cu 2 ][OH ]2
gas-liquid
NH3(g)+H2O(l) D NH4OH(aq)
K p 1 / PNH 3
+(l)+OH-(aq)
2
PNO
PO2
For reactions that have gas components, we normally use pressure to represent the concs
For reactions involves gas+liquid or gas+solid, only gas terms appear in the Keq expression
14
Chemical Reactions
Le Chateliers Principle
When a system in equilibrium is subjected to an external stress, the system will
establish a new equilibrium, when possible, so as to minimise the external stress
Stresses: Changes in [ ], temperature or pressure
Example:
(exothermic)
a) Effect of ([ ]). Increasing [ ] of substance shifts equil. in the direction of the long arrow
N2 + 3H2
2NH3 + heat
N2 + 3H2
2NH3 + heat
N2 + 3H2
2NH3 + heat
Kp
2
PNH
3
PN 2 PH32
PN 2 or PH 2 PNH3
const
PNH3 PN 2 & PH 2
2NH3 + heat
c) Effect of Pressure. (only affects reactions that have volume change before & after).
Increase in pressure:
N2 + 3H2
4 volumes
2NH3 + heat
2 volumes
15
Chemical Reactions
1) 2O3(g) D 3O2(g)
[atm]3
Kp 2 ,
[][atm]
2
PO3 [atm]
[Ag(NH3 ) 2 ]
[mol/l]
Kc
,
[
]
[] [mol2 /l2 ]
2
2 2
[Ag ][NH3 ]
[mol/l][mol /l ]
K p PN32 , [][atm3 ]
Kp
1
, [][1/atm]
PCl 2
K p PCl 2 , [ ][atm]
2
PNH
3
[atm2 ]
Kp
, [ ]
[][1/atm2 ]
3
3
PN 2 PH 2
[atm][atm ]
Note 1. The Keq expression depends on how the rxn equation is written (compare rxns 4&5).
2). The unit of Keq depends on the way how the rxn eqn is written & the unit used of each.
16
Chemical Reactions
(0.166) 2
1)
Kp
2)
3)
PN 2 PH32
4) A decrease reaction P favours the reverse rxn because Volreactant > Volproduct.
5) Yes. As Keq=P2NH3/(PN2xP3H2)=constant, the removal of NH3 will reduce PNH3, to
compensate the change, more N2 and H2 will be converted to NH3 in order to keep
the same Keq (reaction quotient).
17
Chemical Reactions
Chemical Reaction
We can judge if a give chemical reaction would proceed in the direction specified
For reactions that are feasible, to what extent they will complete
Now we know a rxn would proceed in the direction specified, questions are:
- how fast that reaction is going to proceed under give conditions?
18
Chemical Reactions
The number of moles of a reactant converted (consumed) in a reaction per unit time
for a reaction
rA
A+BC+D
[A]2 [A]1
t 2 t1
or rA
d [A]
dt
(mol/s)
When we say rate we always refer to ONE of the components in the reaction
The minus sign refers to that the concentration of reactant decreases in reaction
Arrhenius equation
dt
where
A0
Ea
a,b,l,d
R
T
RT
pre-exponential factor
reaction activation energy
reaction orders with respect to A, B, C, D, respectively
gas constant
reaction temperature in Kelvin scale
Kinetic
parameters
19
Chemical Reactions
-E
k A0 exp a
RT
Pre-exponential factor, A0
It refers to the frequency of collision between molecules, the higher frequency, the faster rxn
energy
Ea
reactant
product
reaction process
The magnitude of these values reflects the effectiveness of each component in the reaction
Chemical Reactions
Reaction temperature, T
-E
E
dln k
-E
k A0 exp a ln k ln A0 a
a2
RT
dt
RT
RT
the higher Ea value is, the more significant of the effect of increasing T on the reaction rate
Concentration
of reactants / products
presence of a catalyst
A catalyst can alter reaction rate (speeding up desired rxns or slowing down undesired rxns)
Note: we assume rate of mass transfer (to meet) is sufficient high comparing to rA.
21
Chemical Reactions
say a reaction is kinetic control when the rate of mass transfer > the rate of rxn rA.
This means that molecules being transported
to the reaction site are queuing for reaction
mass
transfer
reaction
If
the mass transfer rate is slower than the reaction rate, the overall rate we observed
will be the rate of mass transfer, not the reaction rate - diffusion control
The
mass
transfer reaction
The slowest step in a reaction process determine the overall rate of a reaction
22
Chemical Reactions
catalyst can be an acid, a base; can be a liquid or a solid. Most industrial catalysts
are metals, metal oxides or a mixture of them formulated & made in special ways
Use
of catalysts in industry
Slowing down undesired reaction thus reduce the unwanted waste products
Altering reaction route by changing the relative speed of certain steps in a reaction network
therefore realising certain products which would not be possible without catalysts.
Allowing some rxns to occur under mild conditions e.g. working with heat sensitive materials
etc
23
Chemical Reactions
rN 2O5
2) 3-5h
rN 2O5
3) aver. rN 2O5
rN 2O5
[A]2 [A]1
; rNO2
t 2 t1
4
2
[A]2 [A]1 ;
t 2 t1
O2 formation rate
rO2
1
2
[A]2 [A]1
t 2 t1
4
1
1.07 1.40 0.165 mol/L h
1.07 1.40
2 1.07 1.40
0.33; rNO2
0.66; rO2 2
1 0
1 0
1 0
4
1
0.34 0.58 0.06 mol/L h
0.34 0.58
2 0.34 0.58
0.12; rNO2
0.24; rO2 2
53
1 0
1 0
4
1
0.09 1.40 0.073 mol/L h
0.09 1.40
2 0.09 1.40
0.146; rNO2
0.291; rO2 2
90
1 0
1 0
24
Chemical Reactions
2N2O5 = 4NO2 + O2
1) 0-1 h
rN2O5=0.33
rNO2=0.66
rO2=0.165
mol/Lh
2) 3-5h
rN2O5=0.12
rNO2=0.24
rO2=0.06
mol/Lh
3) aver.
rN2O5=0.146
rNO2=0.291
rO2=0.073
mol/Lh
For
the same reaction, the reaction rate expressed by different components varies
with their stoichiometry coefficients
rN 2O5
rNO2
rO2
2
4
1
Given reaction rate for one of the rxn components you should be able to calc others.
For the same reaction the reaction rate may vary with the time
because of change of reactant concs with time & rate in general is proportional to [ ]s.
When rxn orders w.r.t. reactant > 0 (usually they are) the rxn rate rbeginning > rlater
As
Dont
forget to put the correct unit to the reaction rate you determined
25
Chemical Reactions
How many grams of water are produced in the oxidation of 1.0g of glucose,
C6H12O6? Reaction equation: C6H12O6 + 6O2 = 6CO2 + 6H2O
Chemical Reactions
In a reactor one put 180g of glucose (C6H12O6) and 160g of O2. Can you
produce 108g of H2O. Why? What is the maximum amount of H2O which can
be produced? Reaction equation: C6H12O6 + 6O2 = 6CO2 + 6H2O
Step 2: Find out how much glucose AND O2 you need to produce 108g H2O.
To produce 108g which is 6 moles of H2O, you will need 1mole glucose AND 6 moles of O2.
Do we have enough glucose? - Yes. Do we have enough O2? - No.
Step 3: Every 6 molecules of O2 will burn 1 molecule of glucose, this will proceed UNTIL
one of the reactant consumed completely, in this case O2.
When all O2 is consumed the reaction will stop and the max. amount of H2O which can be
produced can be calculated from O2 available: 5moles of O2 gives 5moles (or 90g) of H2O
Note: When one of reactants is consumed completely the reaction will stop.
27
Chemical Reactions
As in Question 2, one puts 180g of glucose (C6H12O6) and 160g of O2. When
O2 is completely consumed, what is the glucose left & what is the percentage
conversion of glucose? Reaction equation: C6H12O6 + 6O2 = 6CO2 + 6H2O
Step 2: Find out how much glucose left after all O2 has consumed.
The molar ratio of glucose and O2 in the reaction=1:6. For a consumption of 5 moles of O2,
the amount glucose reacted will be 1x5/6=5/6 moles or 0.83 moles, or 0.83x180=150g.
The amount glucose left over=1-0.83=0.167moles or 180-150=30g
conversion(%)
[A]in [A]out
1 0.833
100 %
100 % 83 .3%
[A]in
1
Note: The conversion (%) calculated based on moles is the same as that based on weight .
28
Chemical Reactions
The brown gas NO2 can form colorless gas N2O4, 2NO2 D N2O4. At 25C the
concentrations of NO2 & N2O4 are 0.018 M & 0.055 M respectively when at
equilibrium. 1) Calculate the equilibrium constant Keq at 25C. 2) If in another
equilibrium system of the same gases at the same temperature, the NO2
concentration is found to be 0.08 M, what is the concentration of N2O4?
K eq
[N 2 O 4 ] 0.055
170
2
2
[NO 2 ]
0.018
[N 2 O 4 ] [N 2 O 4 ]
2
K eq
170
[N
O
]
0.08
170 1.088 M
2 4
[NO 2 ]2
0.08 2
29
Chemical Reactions
energy.
Arrhenius eqn relates the rate constant to activation energy
ln k
k A0 e Ea / RT
slope= -12750
ln ln
Ea / RT2
Ea / RT2
k 2 A0 ,2 e
A
e
0
,
2
k2
1/T
A Ea Ea
ln 0 ,1
A RT RT
2
0 ,2 1
Ea Ea T1 T2
RT1T2 k1
a
or Ea
ln 1
ln
k
RT
RT
RT
T
T
T
1
2
1 2
1
2
2
k2
Let A0,1
=A0,2 E
k
30
Chemical Reactions
Answer:
Two catalysts A & B are compared for their catalytic activity for reaction RP.
When A is present it takes 10s for R to change from 2 to 0.5 moles and when
B is present it takes 20s for R to decrease from 5 to 2 moles at the same
temperature and with the quantities of catalyst.
Which catalyst is more active for the reaction concerned?
The activity of two catalysts can be compared based on the average reaction
rate when A & B presence separately.
rR ,A
rR ,B
0.15 mol/s
Dt A
10
[ R]2 ,B - [ R]1,B 3 - 5
0.10 mol/s
Dt B
20
31
Chemical Reactions
Answer:
Verify that the rate constant of a reaction following second order rate law
rA=-k[A]2 can be determined from the slope of a line obtained by plotting 1/[A]t
against reaction time t, where [A]t is the concentration of A measured at time t.
d [A]
k[A]2
Second order rate law:
dt
d [A]
d [A]
2
k
[A]
kdt
rearrange:
dt
[A]2
rA
(1)
(2)
[A]t - 1
t
1 1
d [A]
1
1
kdt
d
[A]
k
dt
k
t
kt
[A]0 [A]2
0
[A] [A]
[A]2
[A]t
[A]0
t 0
(3)
compare eqn (3) with linear eqn Y=aX+B, which is a straight line with slope a
1
1
, a k , X t and b
[A]t
[A]0
1
A plot of [A] vs. t will give a straight line with slope=k.
t
Let
1/[A]
slope=k
32
Chemical Reactions
Reaction RP follows the second order rate law rR=-k[R]2. Verify that the time
required for the reactant R to fall to a half of its initial value is t1/2=1/(k[R]).
Second order rate law:
rR
d [R]
k[R]2
dt
(1)
kt1 / 2
[R]t
[R]0
0.5[R]0
[R]0
1
1
1 1
1 1 2
1
kt1 / 2
t1 / 2
0.5[R]0 [R]0
k 0.5[R]0 [R]0 k [R]0 [R]0
1
t1 / 2
k[R]0
33
Chemical Reactions
Homogeneous - All of reactants & products in the same phase & no phase boundary
Type
Homog.
Example
2NO + O2 = 2NO2
gas - liquid
Hetrog.
gas - solid
Hetrog.
O2 + Fe = Fe2O3
Homog.
liquid - solid
Hetrog.
solid - solid
Hetrog.
* When two immiscible liquid, such as oil and water is regarded as heterogeneous type.
34
Chemical Reactions
Solid
Energy level
solid
water
vapour
Temperature
liqui
d
freezing
sublimation
Liquid
evaporation
deposition
Gas / vapour
condensation
gas
melting
liquid
water
evaporating
ice melting
Energy (heat) added
35
Chemical Reactions
Solute
Solute
is another liquid - solute and solvent are miscible (e.g. C2H6O + H2O)
solute in a solution can exist as molecules or ions, or both (such as weak acid)
some solutes are dissolved in a solvent in any proportions (e.g. C2H6O in water); others are
only dissolved in a solvent in certain proportion - solubility limitation (e.g. NaCl or N2 in H2O)
Weight
Chemical Reactions
When a solute dissolve in solution, solute can either be present as molecules or ions
as ions. e.g. dissolving salt (NaCl) in water - Na+ & Cl- both conduct electricity.
Strong acids or base, when dissolved in H2O, form only ions in solution
Weak acid or base, when dissolved in H2O, form mixture of molecules and ions (partial dissociatn)
The solubility of some gas solutes, when dissolved in a solvent, depends on the
pressure of the solute gas above the solution
ideal solution: Pi=xiPi* or xi=Pi / Pi*
in which
Solvent molecules may form weak bond with solute molecules (e.g. Hydrogen-bond),
which may to a certain degree change the reactivity of solute.
The presence of solute may affect certain properties of the resultant solution
e.g. boiling point elevation, freezing point depression, osmosis pressure, etc.
37
Chemical Reactions
High mass transfer rate - General magnitude of mass transfer rate in solid, liquid and gas
solid 100
liquid 103
gas 105
High heat transfer rate - This is very important for reactions involving heating/cooling
In practice, many reactions in which the reactants are liquid or solid at normal temperature
are carried out at elevated temperatures in order to convert the reactants to gas
This has implication on the reactions involving the change of number of moles before and
after reaction.
not suitable for heat sensitive substances if heating to high temperature is required.
38
Chemical Reactions
Solid phase reactions are usually slow due to limited mobility of molecules
When a solid reacts with another reactant which is liquid or gas, the
reaction starts from outer surface of the solid
heating
solid in solvent
Solid
It
catalysts are very easy to separate from liquid, gas or a liquid-gas mixture
is easy to handle solid catalysts from practical point of view (loading, discharge etc)
39
Chemical Reactions
reactants and products can be presented as any combination of two or three phases.
Relative rate of reactant and/or product molecules diffusion within each phase as well
as through phase boundaries must match the rate of reaction
When a porous solid is involved the liquid/gas molecules transport within the pore
Both pressures (for gas phase) and concentrations (for liquid) are interlinked in the
reaction network therefore these have to be considered systematically.
When reaction involves heating or cooling, as most of reactions do, this has to be
dealt with by considering both mass transfer and heat transfer within and between
different phases.
Chemical Reactions
gas phase
reactant molecule
gas phase
k
l
liquid
phase
mn
porous
solid
pore
pq r
Chemical Reactions
Acids & Bases are one of the most important classes of chemicals
Acids and bases have been know to human for a long time
Bases taste bitter and feel slippery (like in soap, lime water)
Acids and bases are widely used in industry for various purpose
etc
42
Chemical Reactions
Classical definition
Acids - Substances that, when dissolved in water, increase the concentration of H+ ions
e.g.
HCl(g)
H2O
H+(aq) + Cl-(aq)
Note: H+, which is a proton only (no e- ), is actually bond with water molecule forming H3O+, the rxn is
Bases - Substance that, when dissolved in water, increase the concentration of OH ions
e.g.
NaOH
H2O
OH-(aq) + Na+(aq)
Brnsted-Lowry definition
Acid is proton donor and Base is proton acceptor
-
Chemical Reactions
An acid & a base always work together to transfer proton (donate-accept). A substance
can function as an acid only if another substance behaves simultaneously as a base.
When an acid or a base is dissolved in water, ions are released - this process involves
proton transfer. To mark the process and link the ions with its original acid or base,
conjugate acid-base pairs are defined.
remove H+
base
X-(aq)
conjugate base
add H+
H3O+(aq)
conjugate acid
and conjugate base always appear in pair; likewise base and conjugate acid appear in pair
an acid losses proton (H+) it becomes the conjugate base of that acid (e.g. HX to X -)
when a base receives a proton (H+) it becomes the conjugate acid of that base (H2O to H3O+)
If an acid dissolves in water, H2O is a base; if a base dissolves in water, H2O becomes an acid.
When
add H+
remove H+
base
conjugate
base
add H+
conjugate
acid
acid
conjugate conjugate
acid
base
remove H+
44
Chemical Reactions
Weak
strong
negligible
base
Cl
HSO4
NO3
H2O
2SO4
H2PO4
F
C2H3O2
HCO3
HS
2HPO4
NH3
2CO3
3PO4
OH
2O
H
CH3
weak
acid
HCl
H2SO4
HNO3
H3O
HSO4
H3PO4
HF
HC2H3O2
H2CO3
H2S
H2PO4
NH4
HCO3
HPO4
H2O
OH
H2
CH4
Strong
weak
strong
negligible
The
45
Chemical Reactions
Some acids (or bases) ionise in water completely, leaving no molecules behind
Other acids (or bases) ionise partially in water, forming an equilibrium between
molecules and ions
e.g.
(1)
(2)
The tendency of ionisation of an acid (or a base) varies with the type of acids, we
can use the concept of reaction equilibrium to indicate the degree of ionisation.
The equilibrium constant used to describe the degree of ionisation of an acid is
called acid-dissociation constant, Ka, which is defined as
for equili. (1)
for equili. (2)
ions
[F - ][H 3O ]
[F - ][H ]
K a K eq
or K a
molecule
[HF]
[HF]
[NH4 ][OH ]
K a K eq
The higher the Ka value, the higher
[NH3 ]
ion conc., the higher acidity/basicity
46
Chemical Reactions
We know that an acid when dissolved in water releases [H+] and a base gives [OH-]
We also know that the strengths of an acid or a base depend on the [H+] and [OH-]
It comes naturally that [H+] & [OH-] are used to indicate the strengths of acids/bases
pH scale
For convenience the low value of [H+] and [OH-], we use the scale of log10 [H+]
define pH= -log10[H+] Scale: 1-14. Acid pH=0-7 [H+]>[OH-]; strong acids have low pH
Base pH=7-14 [OH-]>[H+]; strong bases have high pH
Note: When using [OH-] (which is less used), we have pOH= -log10[OH-] (=14-pH)
47
Chemical Reactions
Calculation of pH
Example 1: Calculate pH of 0.05M HNO3 solution
HNO3 + H2O H3O+ + NO3HNO3 is a strong acid, HNO3 ionizes completely in water, i.e. [H3O+]= 0.05M
pH = - log10[0.05] = 1.3
Kw = [H3O+][OH-] = 1 x10-14 M2
Chemical Reactions
Calculation of pH
Example 3: What is the [OH-], in mol/L, in a solution whose pH is 9.72?
Known: pH = - log10[H3O+] = 9.72 [H3O+] = 1.9 x 10-10 (mol/L)
for any aqueous solution
[OH- ] = Kw / [H3O+] = 11.0 x 10-14 (mol/L)2 / 1.9 x 10-10 (mol/L) = 5.3 x 10-5 (mol / L)
2
2-x
[F ][H 3O ]
xx
6.8 10 4
[HF]
2- x
Solve the eqn for x ( = [H3O+])
x 2 6.8 104 x 2 6.8 104 x 0.0365 M
By definition K a K eq
Chemical Equilibria
Plants contain weak acids, which maintain right balance for plants to grow
Many properties of a solution that has ions are affected by its equilibrium state.
The behaviour of an equilibrated electrolyte solution when other ions are added
Applications
Buffer effect
Acid-base titration
Chemical Equilibria
0.3
at equilibrium
0.3-x
By definition
[H ][C2 H3O-2 ]
xx
Ka
1.8 105
[HC2 H3O2 ]
0.3- x
x [H ] 2.3 10 3 M
Note: HC2H3O2 is a weak acid (Ka<<1) and the water solutn of HC2H3O2 is an electrolyte solution.
51
Chemical Equilibria
(contd)
Case 2. What is the pH of solutn contains 0.3M acetic acid HC2H3O2 & 0.3M NaC2H3O2?
HC2H3O2(aq) D H+(aq) + C2H3O2-(aq)
initial
0.3
at equilibrium
0.3-x
0.3+x
1.8 105
By definition K a
[HC 2 H3O2 ]
0.3- x
Solve equ for x
x [H ] 1.8 10 5 M
pH -log[H ] -log 1.8 10 5 4.74
This is called the Common-ion Effect. It works in many equilibrated electrolyte solutions
such as buffer solutions, solubility of ionic compounds etc.
52
Chemical Equilibria
Buffered Solutions
acid-dissociation constant
[H ][X - ]
[HX]
Ka
[H ] K a
[HX]
[X - ]
When the addition of OH- or H+ is small compared to [HX] & [X-], the change to [HX] & [X-] is very
small, so does the ratio [HX] / [X-] the [H+] thus pH will remain almost constant.
Chemical Equilibria
Equilibrium between solid of ionic compound and its ions when dissolved
dissolving
Equilibrium constant:
Chemical Equilibria
Many metal hydroxides are partially dissolved in solutn (or precipitated when formed)
solubility-product constant Ksp=[Mg2+] [OH-]2
When adding an acid, H+, into the above equilibrated solution, a reduction of solution
pH occur due to the following reaction: H+ + OH- D H2O, OH- in the solution is
consumed thus reduced [OH-] [Mg2+] [Mg(OH)2] .
Chemical Applications
Titration
Titration reactions
End point - The point at which a pre-determined indication of reaching the equivalent
point effects. It is practically the point one stops adding standard solution
and is usually very close to the Equivalent point
Colour (indicators or the colour change of the substance itself before and after equiv. point
Conductivity if the quantities of ions is used as an indication
Others such as precipitation formation
56
Chemical Applications
pH
14
pH
14
Equivalent point
12
12
Ka=10-10
10
Ka=10-6
Ka=10-4
HPO3 2-
10
Ka=10-8
Ka=10-2
H3PO3
H2PO3-
2
0
0 10
strong acid
20
30 40 50
mL NaOH
60
0
0
20
40
60 80
mL NaOH
100
57
Organic chemistry
The bonds of HCs are mainly covalent, formed between C and C (C-C, C=C or CC), H (CH), O (C-O or C=O) and others such as N (C-N).
The C-C bonds forms the backbone or skeleton of HCs and Hs are at surface
Many FGs attached to C-C skeleton give HCs various unique function and properties.
Stability
All HCs can burn in oxygen easily giving heat.
C-C single bonds are most stable (- > = > ), C-H & C-FGs are easy to break
58
There are four types of HCs (based on the kinds of C-C bonds)
Alkanes (C-C)
Alkenes (C=C)
Alkynes (CC)
contain only C-C bonds in this group of molecules, also called saturated HCs
contain CC bonds
unsaturated HCs
Aromatics
59
Alkanes
Its molecular formula can generally be written as CnH2n+2, where n is the number of
carbon atoms in molecule.
Name
Molecular
formula
methane
CH4
ethane
C2H6
propane
C3H8
butane
C4H10
pentane
C5H12
Condensed
structure formulary
Lewis structure
H
CH4
H-C-H
H H
H
H-C-C-H
CH3CH3 or CH3-CH3
H HH
H H
H-C-C-C-H
CH3CH2CH3
H HH
H HH H
CH3CH2CH2CH3
H-C-C-C-C-H
H HH HH
H HH H
CH3CH2CH2CH2CH3
H-C-C-C-C-C-H
H HH HH
Boiling
point
-161C
-89C
-44C
-0.5C
36C
60
-C-C-C-C-
C-C-C-C-C=C-C-C-C
Branched-chain HCs
-C-C-CC
C-C-C
-C-C-C
C
Structural isomers
compounds that have the same
molecules formulas but with
different bonding arrangement
C
C-C-C-C-C=C-C-C
C
C-C-C-C-C=C
C
C
C
C-C-C-C-C=C
C-C-C-C-C=C
CAll
C of these are isomers ofCC9H18C
We can sometimes write only carbon atoms to show the structure & bonds, as
shown above
61
Alkenes
Its molecular formula can generally be written as CnH2n, where n is the number of
carbon atoms in a molecule.
The double bond C=C can locate between any two C (n equal to or larger than 2).
Common alkenes
ethene or ethylene
CH2=CH2 or CH2CH2
propene or propylene
62
Alkynes
The triple bond CC can locate between any two C (n equal to or larger than 2).
Common alkenes
acetylene
CH CH or CHCH
63
Aromatic HCs
More stable than alkenes and alkynes, though there are unsaturated bonds.
H
C
H
C
H
C
or
CH3
H3C
H3C
H3C
C
C
H
CH3
CH3
HO
Tuluene
Cholesterol
64
R-OH
R-O-R
O
R-C-H
O
R-C-R
O
R-C-OH
O
R-C-O-R
O
R-C-N-R
Introductory to Biochemistry
Looking at the compositions and structure of biochemical molecules, and try to understand
their functions at molecular level.
Looking at the properties these molecules especially from biological point of view
The change processes of these molecules in relation to its role in life cycle
The molecules are generally very large, molecular wt in the range of 1,000s -1,000,000s
They are generally very complicated in structure, yet they contains mainly C, O, H as their
main building blocks and some other atoms such N, P, S in their functional groups
The specific ways of these molecules are structured make them specific functions in
biological processes.
All life processes of mammals and other animals on the Earth require energy (processes of
bio-molecule synthesis are endothermic in large), which, ultimately coming from the Sun,
are obtained indirectly through plant photosynthesis.
66
Introductory to Biochemistry
- Proteins
Proteins are big molecules present in living cells (~50% dry wt of our body)
animal tissues, skin, hair, nails, muscles
All proteins are composed of the same building blacks - a-amino acids
HO
HO
H2N-C-C-OH
or
+H N-C-C-O3
R
R
a-amino acids are linked by amide groups, which is formed by reaction between
H
O
-C-O- and H-N- groups of 2 amino acids after dropping a H2O, into proteins
amide group
H
HO HO
HO
HO
+H N-C-C-N-C-C-O- + H O
+H N-C-C-O- + +H N-C-C-O- =
e.g.
2
3
3
3
R
H R
67
Introductory to Biochemistry
Proteins
68
Introductory to Biochemistry
Enzymes
Proteins
Enzyme is one of the most important classes of proteins. Each enzyme is capable
of catalysing very specific reactions with living organisms
There are many different amino acids, the difference being the R groups
HO
H2N-C-C-OH
e.g.
HO
HO
H2N-C-C-OH
H2N-C-C-OH
CH3
Glycine
Alanine
69
Introductory to Biochemistry
Carbohydrates
Introductory to Biochemistry
Carbohydrates
Starch
Many crops contains mainly starch (corn, potatoes, wheat, rice etc). It is a major way
plants store their energy
It consists of mainly glucose. due to different way in which glucose units are joined
together, starch may be unbranched or branched in structure
Hydrolysis of starch, catalysed by enzyme within our digestive system, gives glucose
Glycogen
These type of polyaccharides can be synthesised within our body and stored in liver and
muscles. It services as immediate energy source of our body.
Cellulose
It forms major structural unit of plants (e.g. wood 50%, cotton fibres 100% cellulose).
usually unbranched chain of glucose units with average molecular weight 500,000 amu.
The enzymes within our body which help hydrolysis starch cannot digest cellulose.
71
Introductory to Biochemistry
Nucleic Acids
The nucleic acids are bio-polymers (molecules are linked together through
polymerisation reaction like the formation of proteins from amino acids)
The basic building blocks of nucleic acids are called necleotides.
nucleotides are formed from the following units:
1. a phosphoric acid molecule, H3PO4
2. a five-carbon sugar
3. a nitrogen-containing organic base
DNA
RNA
72
Introductory to Biochemistry
DNA has huge molecular weight ranging from 6~16 million amu
DNA is found primarily in the nucleus of living cell
DNA stores the genetic information of the cell & controls the production of protein
HOCH2
H
O
l
l
C
C
Hl
l Hl
l OH
HC
C
l
l
OH OH
ribose
HOCH2
H
O
l
l
C
C
Hl
l Hl
l OH
HC
C
l
l
OH H
deoxyribose
73
Analytical Techniques
n=2
Ground state
Excited state
When absorbing electromeganetic radiation
(e.m.r.). Atoms/molecules rise their E levels
n=4
n = 3,
etc.
4f
4d
4p
3d
4s
n=1
Energy
Introduction to Spectroscopes
3p
3s
2p
2s
1s
n=2
n=1
Atomic level
Molecular level
n=3
v4
v3
v2
v1
v4
v3
v2
v1
S2
T1
Absorption/Emission spectra
v4
v3
v2
v1
S0
74
Analytical Techniques
Introduction to
UV-Visible Absorption Spectroscopy
X-Ray
UV
200nm
Visible
400nm
IR
Microwave
800nm
Wavelength (nm)
75
Analytical Techniques
UV Absorption Spectrometer
UV Light Source
Monochromator
90C
Detector
Monochromator
s
p
n
p
Ground state
Energy s
Antibonding
Antibonding
ns np
Nonbonding
pp
Bonding
ss
Bonding
UV Spectrometer Applications
Protein
Amino Acids (aromatic)
Pantothenic Acid
Glucose Determination
Niacin
Pyridoxine
Vitamin B12
Metal Determination (Fe)
Fat-quality Determination (TBA)
Enzyme Activity (glucose oxidase)
76
Analytical Techniques
77
Analytical Techniques
lon source
heated filament
produce electrons
beam which
collide and ionise
sample molecules
mass analyser
Ions with different mass & echanges travel at different
speeds under the magnetic
field, reaching the detector
at different time.
detector
The charges carried
by the ions are
converted to electricy
current and detected
Analytical Techniques
m/e ratio
Corresponding ion
35
35Cl+
37
35Cl+
70
35Cl+ - 35Cl+
72
35Cl+ - 37Cl+
74
37Cl+ - 37Cl+
79
Analytical Techniques
Introduction to Chromatography
The
v
gas or
liquid
effluent
sample (A+B)
injection
column
carrier
(C)
effluent
Types
A
B
t = to
effluent
c
t = ti
A
B
effluent
of chromatography
t
c
t = te
80
Analytical Techniques
Introduction to Chromatography
Typical GC setup
GC chromatograph
81