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Chapter 11-Homogeneous Reaction

This document summarizes reaction kinetics and cell growth kinetics. It discusses homogeneous versus heterogeneous reactions, reaction rates, orders of reactions, enzyme kinetics including Michaelis-Menten kinetics, effects of temperature and conditions on reaction rates, calculation of rates from data, cell growth phases, balanced growth, Monod kinetics, plasmid instability, production kinetics coupled to metabolism, substrate uptake kinetics, cell death kinetics, and yields in biological systems.

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Bryan Manalili
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420 views55 pages

Chapter 11-Homogeneous Reaction

This document summarizes reaction kinetics and cell growth kinetics. It discusses homogeneous versus heterogeneous reactions, reaction rates, orders of reactions, enzyme kinetics including Michaelis-Menten kinetics, effects of temperature and conditions on reaction rates, calculation of rates from data, cell growth phases, balanced growth, Monod kinetics, plasmid instability, production kinetics coupled to metabolism, substrate uptake kinetics, cell death kinetics, and yields in biological systems.

Uploaded by

Bryan Manalili
Copyright
© Attribution Non-Commercial (BY-NC)
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PPTX, PDF, TXT or read online on Scribd
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Homogeneous reaction

Mabulay, Joanna Marie D. Manalili, Bryan Neil T.

Homogeneous versus Heterogeneous


A reaction is homogeneous if the temperature and all concentrations in the system are uniform. Most fermentations and enzyme reactions carried out in mixed vessels fall into this category. In contrast, heterogeneous reactions take place in the presence of concentration or temperature gradients. Analysis of heterogeneous reactions requires application of mass transfer principles in conjunction with reaction theory.

Basic Reaction Theory


Reaction theory has two fundamental parts: Reaction Thermodynamics-concerned with how far the reaction can proceed; no matter how fast a reaction is, it cannot continue beyond the point of chemical equilibrium. Reaction Kinetics-concerned with the rate at which reactions proceed.

Reaction Yield
The extent to which reactants are converted to products is expressed as the reaction yield. Yield is the amount of product formed or accumulated per amount of reactant provided or consumed.

Reaction Yield
Useful Definition of yield,

Reaction Rate
Consider the general irreversible reaction: aA+ bB ---> yY+zZ. For a general reaction system, rate of reaction is related to rate of change of mass in the system by the unsteady-state mass-balance equation. Reaction rate is measured simply by monitoring the change in mass of A in the system.

In bioprocess engineering there are three distinct ways of expressing reaction rate which can be applied in different situations. 1.) Total rate is expressed as either mass or moles per unit time. 2.) Volumetric rate is used to account for differences in volume between reaction systems. Therefore, if the reaction mixture in a closed system has volume V.

3.) Specific rate. In a closed system, specific reaction rate can be measured as follows:

Reaction Kinetics
Reaction kinetics refers to the relationship between rate of reaction and conditions which affect reaction velocity, such as reactant concentration and temperature.

Effect of Temperature on Reaction Rate


Temperature has a significant kinetic effect on reactions. Variation of the rate constant k with temperature is described by the Arrhenius equation:

where k is the rate constant, A is the Arrhenius constant, E is the activation energy for the reaction, R is the ideal gas constant, and T is absolute temperature.

According to the Arrhenius equation, as T increases, k increases exponentially. Taking the natural logarithm of both sides

Calculation of Reaction Rates From Experimental Data


The concentration of a particular reactant or product is measured as a function of time.

Average Rate-Equal Area Method

Mid-Point Slope Method

General Reaction Kinetics For Biological Systems


The kinetics of many biological reactions are either zero-order, first-order or a combination of these called Michaelis-Menten kinetics. Kinetic expressions for biological systems are examined in this section.

Zero-Order Kinetics
If a reaction obeys zero-order kinetics, the reaction rate is independent of reactant concentration. The kinetic expression is:

First-Order Kinetics
If a reaction obeys first-order kinetics, the relationship between reaction rate and reactant concentration is as follows:

Michaelis-Menten Kinetics
The kinetics of most enzyme reactions are reasonably well represented by the MichaelisMenten equation:

Effect of Conditions on Enzyme Reaction Rate


Rate of enzyme reaction is influenced by other conditions besides substrate concentration, such as temperature and pH.

Determining Enzyme Kinetic Constants From Batch Data


To fully specify the kinetics of MichaelisMenten reactions, two rate constants, Vmax and K m, must be evaluated. Estimating kinetic parameters for Michaelis-Menten reactions is not as straightforward as for zeroand first-order reactions. Several graphical methods are available; unfortunately some do not give accurate results.

Lineweaver-Burk Plot
This method uses a linearisation procedure to give a straightline plot from which vmax and Km can be determined.

Eadie-Hofstee Plot
A plot of v/s versus v gives a straight line with slope -I/K m and intercept vmaX/Km ; this is called the Eadie-Hofstee plot.

Langmuir Plot
a Langmuir plot of s/v versus s should give a straight line with slope l/ Vmax and intercept Km/ Vmax .Linearisation of data for the Langmuir plot minimises distortions in experimental error. Accordingly, its use for evaluation of Vmax and Km is recommended

Direct Linear Plot

Kinetics of Enzyme Deactivation


Rate of deactivation is generally considered to be first order in active enzyme concentration:

where A is the Arrhenius constant or frequency factor, Ed is the activation energy for enzyme deactivation, R is the ideal gas constant, and T is absolute temperature.

Yields in Cell Culture

Overall and Instantaneous Yields


In batch culture, F and G can be calculated as the difference between initial and final values; this gives an overall yield representing some sort of average value for the entire culture period.

Theoretical and Observed Yields


This is particularly important for cell metabolism because there are always many reactions occurring at the same time; theoretical and observed yields are therefore very likely to differ. The observed biomass yield based on total substrate consumption is:

In comparison, the true or theoretical biomass yield from substrate is:

Cell Growth Kinetics


From a mathematical point of view there is little difference between the kinetic equations for enzymes and cells; after all, cell metabolism depends on the integrated action of a multitude of enzymes.

Batch Growth
Several phases of cell growth are observed in batch culture. The different phases of growth are more readily distinguished when the natural logarithm of viable cell concentration is plotted against time; alternatively, a semi-log plot can be used. Rate of growth varies depending on the growth phase.

Exponential growth equation

Cell growth rates are often expressed in terms of the doubling time td.

Balanced Growth
Balanced growth means that the cell is able to modulate the effect of external conditions and keep the cell composition steady despite changes in environmental conditions. During balanced growth, composition of the biomass remains constant. In most cultures, balanced growth occurs at the same time as exponential growth.

Effect of Substrate Concentration


During balanced growth, the specific growth rate is related to the concentration of growthlimiting substrate by the Monod equation, a homologue of the Michaelis-Menten expression:

Growth Kinetics With Plasmid Instability


Plasmid instability occurs in individual cells which, by reproducing, can generate a large plasmid-free population in the reactor and reduce the overall rate of synthesis of plasmid-encoded products. After n generations of plasmid-containing cells:

Production Kinetics in Cell Culture

Product Formation Directly Coupled With Energy Metabolism


Growth is usually the major energy-requiring function of cells. However, ATP is also required for other activities called maintenance. Products synthesized in energy pathways will be produced whenever maintenance functions are carried out because ATP is required. Kinetic expressions for product formation must account for growth associated and maintenance-associated production,

Substrate Uptake in the Absence of Product Formation


In the absence of product formation, we assume that all substrate entering the cell is used for growth and maintenance functions. Rates of these cell activities are related as follows:

If we now express u as a function of substrate concentration

Substrate Uptake With Product Formation


In cultures where product synthesis is only indirectly coupled to energy metabolism, rate of substrate consumption is a function of three factors: growth rate, rate of product formation and rate of substrate uptake for maintenance. These different cell functions can be related using yield and maintenance coefficients:

Effect of Maintenance on Yields


True yields such as Yxs, YPX and Yes are often difficult to evaluate. Although true yields are essentially stoichiometric coefficients, the stoichiometry of biomass production and product formation is only known for relatively simple fermentations. If the metabolic pathways are complex, stoichiometric calculations become too complicated.

Biomass Yield From Substrate


Equations for true biomass yield can be determined for systems without extracellular product formation or when product synthesis is directly coupled to energy metabolism.

Product Yield From Biomass


The extent of deviation of Yp'x from Yvx depends on the relative magnitudes of mp and u. To increase the observed yield of product for a particular process, mp should be increased and u decreased.

Kinetics of Cell Death


The kinetics of cell death is an important consideration in design of sterilization processes and in analysis of fermentations where substantial viability loss is expected. Loss. of cell viability can be described mathematically in much the same way as enzyme deactivation; cell death is assumed to be a first-order process:

Kinetics of Cell Death


Alternatively, rate of cell death can be expressed using cell concentration rather than cell number:

In a closed system with cell death the only process affecting viable cell concentration, rate of cell death is equal to the rate of decrease in cell number. Therefore,

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