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Python for Bioinformatics 2nd Edition Sebastian Bassi
Digital Instant Download
Author(s): Sebastian Bassi
ISBN(s): 9781138035263, 1138035262
Edition: 2nd
File Details: PDF, 4.97 MB
Year: 2017
Language: english
PYTHON FOR
BIOINFORMATICS
SECOND EDITION
CHAPMAN & HALL/CRC
Mathematical and Computational Biology Series
Series Editors
N. F. Britton
Department of Mathematical Sciences
University of Bath
Xihong Lin
Department of Biostatistics
Harvard University
Nicola Mulder
University of Cape Town
South Africa
Mona Singh
Department of Computer Science
Princeton University
Anna Tramontano
Department of Physics
University of Rome La Sapienza
Proposals for the series should be submitted to one of the series editors above or directly to:
CRC Press, Taylor & Francis Group
3 Park Square, Milton Park
Abingdon, Oxfordshire OX14 4RN
UK
Published Titles
An Introduction to Systems Biology: Statistical Methods for QTL Mapping
Design Principles of Biological Circuits Zehua Chen
Uri Alon An Introduction to Physical Oncology:
Glycome Informatics: Methods and How Mechanistic Mathematical
Applications Modeling Can Improve Cancer Therapy
Kiyoko F. Aoki-Kinoshita Outcomes
Computational Systems Biology of Vittorio Cristini, Eugene J. Koay,
Cancer and Zhihui Wang
Emmanuel Barillot, Laurence Calzone, Normal Mode Analysis: Theory and
Philippe Hupé, Jean-Philippe Vert, and Applications to Biological and Chemical
Andrei Zinovyev Systems
Python for Bioinformatics, Second Edition Qiang Cui and Ivet Bahar
Sebastian Bassi Kinetic Modelling in Systems Biology
Quantitative Biology: From Molecular to Oleg Demin and Igor Goryanin
Cellular Systems Data Analysis Tools for DNA Microarrays
Sebastian Bassi Sorin Draghici
Methods in Medical Informatics: Statistics and Data Analysis for
Fundamentals of Healthcare Microarrays Using R and Bioconductor,
Programming in Perl, Python, and Ruby Second Edition
Jules J. Berman Sorin Drăghici
Chromatin: Structure, Dynamics, Computational Neuroscience:
Regulation A Comprehensive Approach
Ralf Blossey Jianfeng Feng
Computational Biology: A Statistical Biological Sequence Analysis Using
Mechanics Perspective the SeqAn C++ Library
Ralf Blossey Andreas Gogol-Döring and Knut Reinert
Game-Theoretical Models in Biology Gene Expression Studies Using
Mark Broom and Jan Rychtář Affymetrix Microarrays
Computational and Visualization Hinrich Göhlmann and Willem Talloen
Techniques for Structural Bioinformatics Handbook of Hidden Markov Models
Using Chimera in Bioinformatics
Forbes J. Burkowski Martin Gollery
Structural Bioinformatics: An Algorithmic Meta-analysis and Combining
Approach Information in Genetics and Genomics
Forbes J. Burkowski Rudy Guerra and Darlene R. Goldstein
Spatial Ecology Differential Equations and Mathematical
Stephen Cantrell, Chris Cosner, and Biology, Second Edition
Shigui Ruan D.S. Jones, M.J. Plank, and B.D. Sleeman
Cell Mechanics: From Single Scale- Knowledge Discovery in Proteomics
Based Models to Multiscale Modeling Igor Jurisica and Dennis Wigle
Arnaud Chauvière, Luigi Preziosi, Introduction to Proteins: Structure,
and Claude Verdier Function, and Motion
Bayesian Phylogenetics: Methods, Amit Kessel and Nir Ben-Tal
Algorithms, and Applications
Ming-Hui Chen, Lynn Kuo, and Paul O. Lewis
Published Titles (continued)
RNA-seq Data Analysis: A Practical Introduction to Bio-Ontologies
Approach Peter N. Robinson and Sebastian Bauer
Eija Korpelainen, Jarno Tuimala, Dynamics of Biological Systems
Panu Somervuo, Mikael Huss, and Garry Wong Michael Small
Introduction to Mathematical Oncology Genome Annotation
Yang Kuang, John D. Nagy, and Jung Soh, Paul M.K. Gordon, and
Steffen E. Eikenberry Christoph W. Sensen
Biological Computation Niche Modeling: Predictions from
Ehud Lamm and Ron Unger Statistical Distributions
Optimal Control Applied to Biological David Stockwell
Models Algorithms for Next-Generation
Suzanne Lenhart and John T. Workman Sequencing
Clustering in Bioinformatics and Drug Wing-Kin Sung
Discovery Algorithms in Bioinformatics: A Practical
John D. MacCuish and Norah E. MacCuish Introduction
Spatiotemporal Patterns in Ecology Wing-Kin Sung
and Epidemiology: Theory, Models, Introduction to Bioinformatics
and Simulation Anna Tramontano
Horst Malchow, Sergei V. Petrovskii, and
The Ten Most Wanted Solutions in
Ezio Venturino
Protein Bioinformatics
Stochastic Dynamics for Systems Anna Tramontano
Biology
Combinatorial Pattern Matching
Christian Mazza and Michel Benaïm
Algorithms in Computational Biology
Statistical Modeling and Machine Using Perl and R
Learning for Molecular Biology Gabriel Valiente
Alan M. Moses
Managing Your Biological Data with
Engineering Genetic Circuits Python
Chris J. Myers Allegra Via, Kristian Rother, and
Pattern Discovery in Bioinformatics: Anna Tramontano
Theory & Algorithms Cancer Systems Biology
Laxmi Parida Edwin Wang
Exactly Solvable Models of Biological Stochastic Modelling for Systems
Invasion Biology, Second Edition
Sergei V. Petrovskii and Bai-Lian Li Darren J. Wilkinson
Computational Hydrodynamics of Big Data Analysis for Bioinformatics and
Capsules and Biological Cells Biomedical Discoveries
C. Pozrikidis Shui Qing Ye
Modeling and Simulation of Capsules Bioinformatics: A Practical Approach
and Biological Cells Shui Qing Ye
C. Pozrikidis
Introduction to Computational
Cancer Modelling and Simulation Proteomics
Luigi Preziosi Golan Yona
PYTHON FOR
BIOINFORMATICS
SECOND EDITION
SEBASTIAN BASSI
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accuracy of the text or exercises in this book. This book’s use or discussion of MATLAB • software or related products
does not constitute endorsement or sponsorship by The MathWorks of a particular pedagogical approach or particular
use of the MATLAB• software.
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Acknowledgments xxix
Section I Programming
Chapter 1 Introduction 3
1.1 WHO SHOULD READ THIS BOOK 3
1.1.1 What the Reader Should Already Know 4
1.2 USING THIS BOOK 4
1.2.1 Typographical Conventions 4
1.2.2 Python Versions 5
1.2.3 Code Style 5
1.2.4 Get the Most from This Book without Reading It All 6
1.2.5 Online Resources Related to This Book 7
1.3 WHY LEARN TO PROGRAM? 7
1.4 BASIC PROGRAMMING CONCEPTS 8
1.4.1 What Is a Program? 8
1.5 WHY PYTHON? 10
1.5.1 Main Features of Python 10
1.5.2 Comparing Python with Other Languages 11
1.5.3 How Is It Used? 14
1.5.4 Who Uses Python? 15
1.5.5 Flavors of Python 15
1.5.6 Special Python Distributions 16
1.6 ADDITIONAL RESOURCES 17
vii
viii Contents
Section IV Appendices
Index 417
List of Figures
3.1 Intersection. 60
3.2 Union. 61
3.3 Difference. 61
3.4 Symmetric difference. 62
3.5 Case 1. 65
3.6 Case 2. 66
xvii
xviii LIST OF FIGURES
22.1 Product of Listing 22.2, using the demo dataset (NODBDEMO). 356
-?1X * %
WRIGHT COL'XTY, IOWA. 417 Jelske C'ranier and llattie
l".gger.s were married on X(i\-enilier 13, 1873. Airs. Cramer is a
daughter of Herman and Taulga ( Steinljlock ) l-lggers. To Mr. and
Mrs. Cramer have heen horn eleven children, namely: Anna, Thresia,
Minnie, Margaret, Herman, hlrnest, I'.lsie, John. Jelske, Dalla and
Kay. Anna, the eldest ihuighter, has remained single; Thresia niarrietl
J. G. Groenenwold, and is the mother of t\\(_i children, Gertrude and
Xettie; Minnie married 1-Ted I'ahlman, and to them four children
were horn, these i)eing Jelske. Clara, Xettie and lidna ; Margaret
married J. riroenenwold, and their children are Etta and George;
Herman hecame the hush;ind of Sophia Schmidt; Earnest married
Cleo Chapman; Elsie married William Meyer; the other children are
single. Mr. Cramer, since his residence here, has hecome identihed
with various puhlic interests, one of which is the schocjl system, of
which he has heen a director. His ]5olitical affiliations ha\e heen with
the Democratic party, of which he has ijeen a prominent memher.
Such has l>een Mr. Cramer's fitness for public ser\ice that he has
heen one of Clarion's most ixjpular schocjj directors. He has given
much time and study to the (juestion of education, and is keenly
interested in all that pertains to the welfare of the town in which he
lives. Both he and Mrs. Cramer are active members of the German
Lutheran church. HOX. A. S. CHAPMAN. One of Wright county's best-
known citizens was A. S. Chapman, who came to this county in
1869. He was horn in Penobscot county, Maine, .May 27, 1846, son
of Winthrop Chapman, a native of the same county and a son of
\\'inthrop Chapman, Sr., who was a pioneer in Exeter, Maine. He was
a man ol much wealth, fie was of Scotch ancestry. The mother of A.
S. Chapman was Caroline (luistman) Chapman. A. S. Chapman's
father died on April 4, 1S81. .\. S. Cha])man was reared in his native
county, educated at l'",xeter Academy and later engaged in teaching
in several towns. In 1869 he came to Wright county and located in
the southern part of this county, and kept "bachelor's hall." There he
lived anrl became one of the county's wealthiest men and spent the
rest of his life, dying in October. i88r). He owned over one thousand
acres of \'alualile Wright county land, and was an extensive stock
raiser and feeder. He was a stanch Republican and represented this
(27)
4Io WRIGHT COUXrv, IOWA. cuunty in the luwa
Legislature, Ijeiiig elected in 1887 and ^er\etl in the 'rwenty-seeuud
General .\ssenil)ly. lie was a nio^l excellent lawmaker. .Mr. Chapman
wa> twice niarrietl, lirst tu lunnia W. Llark. 1)_\- whom he had three
children. His wife died in l.Jctol)er, itate. In the >pnng of 1874 he
removed to Wright county, L)wa, and purchased one hundred and
.Mxtv acres in Troy township. Tliis propert}- was increased to three
hundred and twenty acres, which he cultivated until l(,uo, his
retirement taking place at that time, .\fter fori) -three )ears i.if
general farming, he retired to the town of I'.agle (iro\e, Iowa, where
he held several towiishiii olticev Of the ten cinklren born to Mr. and
Mrs. l-'.ugene -\. .\lleu, eight are ikjw hving in Wright county, Iowa.
Mehin (Claiip) .Mien was a native of Wisconsin and was married in
that state. lulgar A. Allen received his education in the common
schols of Wright county, Iowa, and after rmishing the necessary
branches lie taught for several years, or until he was twent)-two
years of age. At that time he purchasefl one hundred and si>;t)-
acres of land, with the intenti
WJUGllT COUNTY, IOWA. 4I9 agricultural pursuits until ujii,
when he cugaycil in the autuniohile husiiK'ss, following tliis until
1914. Un Xoxcnihcr 3. 1914, he wa^. elected to the oHice of county
treasurer and his duties in that cajtacit)- heyan on January _', 1915.
While engaged in farnnng Mr. .Mien served his townshii) hy acting as
townshii) clerk autl trustee of Trov township, and the disijatch with
which he discharged all duties demonstrated his ahilit)' as a leader in
the more nnjjortant offices of trust to which he was later elected. In
the niunlh of Xoveinher. iSqj, i^dgar .\. .\llen was united in marriage
to Alary li. Lewis, tlaughter of Richard and jane (I'ugh) Lewis, and to
them have heen horn three children: hdva Al., \'ernice [. and Juigene
R., all of whom arc at home. Edgar ,\. .\llen is a meniher of tlie
Alethodist Episcopal church, in which he acted as trustee f'et unhoru
to accord a full measure of appreciation for the immortal characters
carved out hy the .\mcrican solilier, among whom was the venerable
Uavid L. Cupjiett, formerly a farmer, merch;int, hanker and public-
spirited man of affairs. lioru on December 25, 1S41, in Bedford
county, 1 'eniisylvania, David L. Qippett, is the son of David A. and
I'.lizabeth (Alickles) Cuppett, who were natives of 1 'eniisylvania and
who married in Bedford count v. David A. Cni)i)ett was the son of
Isaac (."ujjpett, who, it is believed, emigrated from llollan.l to
.\merica. David .\. (,u])])ett had enlisted for service in the
to scr ■ice. He was a hildre 1, six of whon _> the faniil)
settled ii >r foil owed his trade and serve I there as 420 WRIGHT
COUNTY, IOWA. Ulack Hawk War, but his company was not calletl
blacksmith by trade, and was the father of twelve lived to maturity
and all of whom went west. In li Iowa, locating in Delaware county,
where the fat He took an active part in the politics of Colesbu justice
of the peace for eleven years. David L. Lu]jpett received a good
common-school educaticiU, and when old enough, obtained work in
a pottery, where he was employed for four years, until September
10, 1861. when he enlisted at Dubuipie, Iowa, in Company G, Ninth
Regiment, Iowa Volunteer Infantry. His first service was under
General Curtis at the battle of Pea Ridge, Missouri, on March 6, 7
and 8, 1862. This regiment lx)re the brimt of that battle, and his
brigade lost more men than all of the other regiments c(jmbined. On
March 7. i86j, Mr. Cuppett received a wound in the right shoulder
and was sent home on a furlough for tw(j months. He then started
back to join his old comiKiny, Init IkuI proceeded onl}- as far as St.
Louis, when he was again sent home. He remained at home until
July 8, 1862, when he joined his company at Helena, Phillips county,
Arkansas. In July, 1862, the western campaign had become
extremely bitter, and following Mr. Cuppett's return the regiment
took part in the engagements of Chickasaw Bayou, which was the
only defeat the regiment ever suffered: Arkansas Post; the siege of
V'icksburg; Jackson, Mississip])i ; Brandon, Mississippi; Cherokee,
Mississippi; Lookout Alountain. 'rennes>ee: Missionary Ridge,
Tennessee; and Ringgold, Georgia. Mr. Cui>pett was sent home on a
thirty-day furlough in 1863. and was honorably discharged on
January i, 1X64, at Wmidville, Alabama. He again re-enli.sted on the
same day, in the same company and regiment. Afterward he took
jiart in the battles of Reseca, Georgia; Dallas, Big Shanty and
Keiiesaw Mountain. .\t Kenesaw Mountain he was wounded by a
piece of a shell, which struck him in the shoulder. He served with
General Sherman in his campaign fnjm .\tlant;i to tlie sea, and was
in the following battles; Nickajack Creek, .\tlanta, Rzra Church,
Jonesb(jro, r.ovejoy Station, Little River, siege of Savannah, Wateree
River; Columbia, South Carolina; Bentonville and Raleigh, Xorth
Carolina. Mr. Cuppett took part in the Grand Review, at Washington,
D. C, and was honorablv discharged at Louisville, Kentucky. July 18,
1865. In May, 1864, Mr. Cuppett was promoted to the rank of
corporal, but hefd this rank inily two days, when he was ])romoted
to orderly sergeant.
WKIGUT CUl'NTY, IOWA. 42I lie was later promoted to
second lieutenant and ^erved for a short time in this capacity, but
never recei\eil his commission. After Mr. Cuppett's discharge he
returned to his home Ijut tlid not remain long until he removed to
Dul)U(|ue, Iowa, where he was taken in as a partner by his former
employer in the pottery business. Mr. Cuppett continued in this
business for two and one-half years and then returned to Colesburg,
where, in partnership with Trueman ]'. Wells, purchased H. P.
Wright's general store. They operated this store in partnership for
two and one-half years and .Mr. Cuppett then came to Wright
county, in the fall of 1871, and located in Belmond, where he
engaged in the hardware business in i)artnership with \'\. S.
llulibard. This jiartnership continued for se\'eral }ears, when linally
Mr. Cuppett jjurchased Mr. Hubbard's interest and operated the store
alone, in the meantime ha\-ing added a stock of implements. In iSgi
Mr. Cuppett sold the hardware store to \'al Greessey, and devoted
his attentioiCto the implement business until 1906, when he sold the
implement business to Harry Tyrrell. Mr. Cu])pett also owns several
farms, among them one liundred and sixty acres in South Dakota,
one iiundred and sixty acres in Belmond township, Wright cuunty,
and lias owned other has also owned sexeral tow: ^tate except his
home and one 1 the north part of lielmond irst National anil tlie
liclniom iSr,6. David L. Cuppett was n )liard, who wa^. l).irn on Ma\
irents were liezekiah and Sarah (Burgess) Hi icut, who removed to I
'ennsylvania and later .\lr. and Mr>. I'upiiett were married by the R
marriage there ha\e been born six children, fi of whom are living.
.\rthur B., b Jennie Rolbeck, and they ha\e three Ha/.el is married,
l.orenza 1-".., bor llrewsaugh, and they ha\c two cliik later married
K. K. Bailey, and the; born on March -'5, 1S7.:;, married b'-.l Cli iva,
b'rank, Mae and .\rthur. S .\lbert luiglet, and they h;i\e three childr
l.ee 11., born on .\ovember 4, 1S7.), ,li S., born on .\ugust 18, 1884,
died on Xovember 7, 1884. farms at otller times. H( sold most ; 0 f hi
is real est; and fixe ; acr es i :)f land in stockholder 1 in b -oth the
1m ( )n .^ ^ep teni iber ..'(,. i.^ Iowa, to l.u cret :i;i K. Hul burg,
low a. am 1 whose p; bard, nat i\'e S 0 f Connect' Iowa in t he ear
1_\' forties. (reorge I. arl. :in. To their pr operties. Init has itlK ;r
house and I lot Mr. Cupp ett is a Sta .te Bank. :u-ri ed in Ci desk 'iirg,
-'.V 1848, r n C. 1.1 es1 (ju Septen iber 19, 1868, married ildren,
llazel , Blanche and David T. ,n Marcli 1 , T871, married Ceorge n,
\'era and Geraldine. l.orena F.. lave one chi Id, B.eatrice. Mary A.,
hristie. and the\' ha\e four children. I'.., born on May 2:;, 1877,
ni.arried Iren, l''.dwin. Knth 1,. .and .an infant. ed on Se|ite: inl)er
10, 1
422 WRIGHT COUNTY. U)\V.\. Mr. L'lippett is a nicniiicr of
tlie Masonic Iraternity and tiic Grand Army of the Jvlcpuhlic. lie lias
lield all of the iniporlant oflices in the Cirand Arni)- of tiie kepnl)lie
and for the last ei-lit years has served as eomniander of tlie post, lie
was also a ciiarter ineniher of iielniond i.odye, Independent Order of
Odd l-'elJows, iiavin- lieen nntiated nito the order winle m the army.
Later he helped or-anize the iielniond lod-e, lint has since dropped
ont. lie was a charter inenibcr of Whited I'ost Xo. 24J, of P.elmond.
C.rand Army of the Kepiililic. Mr. (,'np])ett is a Re]nil)lican in jiolitics
and lias ser\ed in many positions of Irnst and re.sponsijjijity. He has
lieen township trustee, school treasurer and assessor of I'leasant
township. Since remo\int^- to liehiioiid, he has filled an nne.xjjired
term as ina)'or. has ser\ed in the conncil, as city treasurer, as school
treasurer, and in other ca])acities. Mrs. ("uppetl is a niemher of the
Oon^t;-rei;ational church. Micii.M';]. .\X(1i-:lo mkkmlsox. Michael
An-el.j Miekelson is a man so widely known and .so l)eloved tiiat a
record of his life will lind welcome in many hearts, this in itself
coustituliii!.^ an einiahle trihute. While much ot his lime has been
given to agricultural jmrsuits, in which he has taken a deej) interest,
his mental horizon Is hroad enough to include subjects of the imblic
good and public service, and in these perhaps Mr. Alickelson found
his greatest source of pleasure. .Michael .\ugelo Miekelson was born
..n December _^o, 18.15, i" N'orwaw and is the son of Ola and
.\ngeliiie Mickels,,n, both natixes of that countrw Ola Miekelson was
a farmer in Xorway, and came to this country in uSsCi, locatmg in
(ireeii count), Wisconsin, where he had engaged in farming only a
\ear when both he and his wife died from the effects of cholera,
passing awav withm twehe hours of each other. One of their
children, an infant, died at the same lime. Lura, Michael and Xewton
are the reniaimng members of the family, the last named son imw
resine year's residence with this family, according to the custom of
that day, he was bdiind out to a man b\- the name of Stewart. The
boy engaged tn w
wintair coi'nty, iowa. 423 Michael A. .Mickclson enlisted fur
regular ser\ice in the Civil War un l'"ehriiary jj. 18O5, at Alhany,
Wisec ln^in, serving until Xuvenil)er, 18O5, in Cdinpau)' Ci, h'orty-
ninth Regiment, Wisconsin XOlunteer Inlantr}-. lie jonied the
regiment at Alaclisun, Wisconsin, then did guard dut}' at Rolla,
.Missom-i, and in the latter part of Se[)teml>er, iS()5, was sent with
his comrades to do guard duty in St. Louis. At the age of twent_\-
one ^Michael A. Alickelson rented a farm of forty acres which he
culti\ated for the period of one year. lie then increased his rented
property to t\\ arrangement coutuiued luitd he hail taught eight
term^, lie then toi^ik uij his rcMdence on one hundred and si.\t\-
acres of land in Woolstock townshii), this county, for which property
he paid twenty-hx-e hundred dollars, which he had saxeil h\- the
comhined occupation (if farmmg and teaching in Wisconsin. On
Ocloher 31, 1S77, Michael A. .Mickelson was married to I'annie Fern
Fleek. a daughter of h'.chnund Thiimas and Sarah (Howen) hdeek.
Mr. Mickelson's wife was Ixnn in Wisc(jnsin, her father ])eing a nati\e
of \irginia, and her mother was horn m renusvlvama. These worthy
people were married m Wisconsin, to which state Mr hdeek came
when a yotmg man and began farming in (ireen county, where he
li\'ed the remainder of Ills life. 'Iliis cou]ile were the parents of
eleven children of whom Mrs. Mickelson was the third horn. She has
hve brothers and sisters living. The morning following the wedding
of Mr. and Mrs. Mickelson these iKirses and a well filled wagon,
arriving m Woolsack township on Xovemher 9, 1S77. The\ were
guests of Mr. Mickelson's brother, Xewton, until arrangements could
be made for them to mo\e on their own laiul. One of the lirst things
which Mr. Mickelson did was lo plant a number of beautiful trees
which lia\e made their home farm .juc (d' the most attracti\e in this
section of the state. f'y hard work and persexerance ^fr. and ^vFrs.
Mickelson ha\e ac(|uired four hundred and eight\- acres (d" splendid
farm land, ami one
424 WRIGHT COUNTY, IOWA. Tlie confulence in wliicli Air.
Alickelson is held in this cunimunity is evidenced by the fact that he
has held a nuniljer of public oftices. He was for some time township
trustee, again was appointed road supervisor, and later president of
the school board of Woolstock township. He was also treasurer uf
the district school of Eagle Grove for two years; he served ten years
as cuuncilnian and for four years uf this time was may(jr of Clarion.
Mr. and Airs. Alickelson have a beautiful home, modern in every
respect, located near the court house in Clarion. This is the scene of
many pleasant social gatherings, fur the owners are among the
fortunate type oi people who have friends because they are friendly.
Airs. Alickelson is a woman of culture and relinemeiit. Air. Mickelson,
who is a Rei)ublican, is an. enthusiastic member of the Grand Army
of the Republic. He is a member of the AIas(;nic lodge, the. chapter,
council and commandery, and also is a member of the Alystic Shrine.
In even this incomplete study of the life of Alichael A. Alickelson, one
discovers the elements which go to make up what in more
conspicuous lives is called greatness. Here is a man who was willing
to die for his country if need be; in peace, he has lived for his
country, and by his [jersonality and his genial nature has been a true
friend and real inspiration to all with whom he has come in contact.
JOHN CAAirBI'LL .\ native uf Canada, jolni Campbell, like his w(jrtliy
parents, has been content to follow a well-directed course
throughout life, liurn and reared on the farm, he has devoted bis
entire time and attention to agricultural pursuits, and has made a
record which it will ])e an honor to band ilown to his children,
.\lthough encountering obstacles and disappointments, he has
refused to become disheartened, anil has pressed forwanl until he
has become one of the leading farmers in this county and has had
the honor of ha\ing held all of the township ofticcv J(,hn Campbell
was born on Alarch j^, 1X45, in Ontario, Canada. David Campbell,
father of John Campbell, was born in the state of New ^'ork. When
he was a small child bis ])arents moveil to Ottawa, Canada, and
there he received his education and helped bis father on the farm
until bis si.xteenth )ear. He was then employed a^ a farm laborer for
a number of vears and bv the time be was twentx-five vears of age
was alile
WKUaiT COL'NTY, IOWA. 4-'d to jnirchast farm land in
Ontario witli muney he liad earned and saved, ■|"liere lie farmed
nniil 1S50, when he removed to the United States. lie rented a farm
in l,a[)eer county, .Miclni;an. where he h\ed until iS()5. He then
eame to Wright eounly. this state, loeatini; in I'leasant townshiji,
where he farmed for a year or two and later hought a farm of eighty
acres in Iowa lowiiship. .\fter li\e years of residence there he and his
family moved to a farm which he rented in !>elmond township,
where he li\'ed until his death, which occurred in 1SX7. His wife, who
hefore her marriage was Margaret McMartm, \va^ horn in Osgood,
Canada. .She died in 1850, leaving four chddren, who are now
living. .\ Fifth child is deceased. Her hrother, Thomas, served in the
C\\\\ War and was killed. Her three remaining hr(jthers are still
li\'ing in Canada. John Camphell went to school in the state of
Michigan and afterward was em])loyed in farm work until he came
to this county, .\fter his marriage, Januar}- i-)th, he honght a farm
of eight\- acres, which he has suh>e(|uently increased to an estate
of three lumdred and sixty acres, where he has hecome a general
farmer and stock raiser. On j.uuiary 14, 1S71, John ranii)l)ell was
united in marriage to .\.ngeline .Morris, daughter of Dr. J. 0. ami
I'hoehe U. ( ilahcock ) M.irris. John L. Hahcock was horn in .Mmont,
.Michigan, although her ])arents were nati\'es of other states, the
father id' I'ennsyhania and the mother of .\'ew N'ork. where Doctor
Morris was educated. When about twenty-live _\■ear^ of age, Mr.
Morris started a store in .Mmont, Michigan, and after three years in
that business he took a ten-year contract for cutting and delivering
logs. He then took u]) the ])ractice of medicine, and in 1864 came
to W'right countv, where, after a year's residence near ISehnond, he
started a medical practice, which suhseipiently became e\teusi\'e. In
1880 he and his faniilv moved to Scrantou, Iowa, where thev lived
until the time of his death, in 1888. lli.s wife died in January, M;I5.
I'.leven . d' their thirteen children are still living. To Mr. and Mrs.
John ( amiihell have been Immii three children, namely; William T. is
the husband of .\liiia Sougstadt : John D. married Ciertrude Dice,
who is the mother of two children. Rhea and Tleiie; Cora l^veline,
the youngest child, died when li\e years old. Mr. and ^Irs. Campbell
are iirominent members of the Methodist l^piscop.-d church. Air.
(."amphell is a man who is well read and has been for maiiy years
active in ])ublic atlairs. He has held nearly all the offices which this
townsliip has to ofTer. Mr. and Airs. Camphell fill an important place
in the coniiiiunit\- in which thev have lived so many years and have
shown
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