Module 4
Module 4
BIOMOLECULES
❖ Carbohydrate
❖ Protein
❖ Nucleic acid
❖ Lipid
❖ 2-carbon units
1
BIOMOLECULES
▪ Biomolecules are the most essential organic molecules, which are involved in the maintenance
and metabolic processes of living organisms.
▪ They range from small molecules such as primary and secondary metabolites and hormones to
large macromolecules like proteins, nucleic acids, carbohydrates, lipids etc.
▪ There are four major classes of Biomolecules: Carbohydrates, Proteins, Nucleic acids and Lipids.
Each of them is discussed below.
Micromolecules Macromolecules
Small molecules with relatively low molecular weight. Large, complex molecules composed of repeating subunits
(monomers).
Molecular Weight less than 1,000 Da (Daltons). Molecular Weight above 1,000 Da, often reaching millions of
Daltons.
Highly solubility Low solubility
• Water (H₂O): 18 Da • Proteins (e.g., Haemoglobin): ~64,500 Da
• Glucose (C₆H₁₂O₆): ~180 Da • DNA (per base pair): ~650 Da; entire genome can be
• Amino acids (e.g., Glycine): ~75–204 Da millions to billions of Da
• Acetyl-CoA: ~809 Da • Polysaccharides (e.g., Glycogen): Hundreds of
• Fatty acids (e.g., Palmitic acid): ~256 Da thousands to millions of Da
• Lipids (e.g., Phospholipids in membranes): Varies; some
complex lipids are >1,000 Da 2
CARBOHYDRATES
4
CLASSIFICATION OF CARBOHYDRATES
5
MONOSACCHARIDES
6
GLUCOSE
➢ Glucose is an aldohexose and occurs in both free and combined forms in nature.
➢ It is present in honey and sweet fruits.
➢ Also, glucose is present in large amounts in ripe grapes, so it is known as grapes sugar.
➢ Glucose is the unit of starch, cellulose and glycogens.
Preparation of Glucose
7
STRUCTURE OF GLUCOSE
Fischer projection Cyclic structure Haworth projection
9
COMPARISON OF GLUCOSE AND FRUCTOSE
10
DISACCHARIDES
• One of the common disaccharides is • Another disaccharide, maltose • It is more commonly known
sucrose which on hydrolysis gives is composed of two a-D- as milk sugar since this
equimolar mixture of D-(+)-glucose glucose units in which C1 of disaccharide is found in milk.
and D-(-) fructose. one glucose (I) is linked to C4 of • It is composed of β-D-
• These two monosaccharides are held another glucose unit (II). galactose and β-D-glucose.
together by a glycosidic linkage • The free aldehyde group can be • The linkage is between C1 of
between C1 of α-D-glucose and C2 of
produced at C1 of second galactose and C4 of glucose.
β-D-fructose. Since the reducing
glucose in solution and it Free aldehyde group may be
groups of glucose and fructose are
involved in glycosidic bond shows reducing properties so it produced at C-1 of glucose
formation, sucrose is a non reducing is a reducing sugar. unit; hence it is also a
sugar. reducing sugar.
• Sucrose is dextrorotatory but after
hydrolysis gives dextrorotatory
glucose and levorotatory fructose. 12
POLYSACCHARIDES
Amylose Amylopectin
• Amylose constitutes about 15-20% of starch and is • Amylopectin constitutes about 80- 85% of starch and is not
water soluble component. soluble in water. y In it, a chain is formed by C1–C4 glycosidic
• Amylose is formed chemically formed by 200- 1000 a-D- linkage, while branching occurs by C1– C6 glycosidic linkage.
(+)-glucose units held together by C1–C4 glycosidic • It is formed by the branched-chain polymer of a-D-glucose units
linkage, forming long unbranched chain. 14
CELLULOSE
15
COMPARISON OF CARBOHYDRATES
16
PROTEIN
1. Primary Structure:
• Frederic Sanger gave Primary structure of Insulin for the
first time. Proteins may have one or more than one
polypeptide chains.
• Amino acids of each polypeptide in a protein are joined to
each other in a specific sequence and this sequence is
termed as primary structure of that protein.
2. Secondary Structure:
• By intramolecular H-bonding between the carboxyl and
amino groups there is regular folding of the backbone of
the polypeptide chain which arises secondary structure.
• Secondary structures are found to present in two different
types of structures viz. α-helix and β-pleated sheet
structure.
22
SECONDARY STRUCTURE OF PROTEINS
α-Helix Structure
• In β-pleated sheet structure all peptide chains are stretched out to nearly maximum extension and then laid side
by side which are held together by intermolecular hydrogen bonds.
• β-pleated sheet structure are parallel and anti-parallel type.
• In parallel form all polypeptide chain run in the same direction (Keratin), while in anti-parallel form, the alternate
polypeptide chain run in same direction (fibroin).
24
DIFFERENCES BETWEEN α-HELIX AND β-PLEATED SHEET
Intramolecular hydrogen bonding forms Beta sheets are formed by linking two
within the polypeptide chain to create a or more beta strands by intermolecular
spiral structure. hydrogen bonds.
25
3. Tertiary Structure:
26
4.Quaternary Structure:
30
Chargaff Rule
Nucleoside
• Nucleoside is a unit formed by the attachment
of a base to 1 position of sugar.
• Sugar + Base = Nucleoside
• The sugar carbons in nucleosides are labeled
as 1', 2', 3', and so on to differentiate these
from the bases.
Nucleotide
• A nucleotide is formed when a nucleoside is
linked to phosphoric acid by N-glycosidic
bond at the 5'-position of the sugar moiety.
• A nucleotide unit formed by the attachment of a
base 1 position of sugar and attachment of
phosphoric acid with 5 position of sugar.
• Sugar + Base + Phosphoric acid =
Nucleotide
32
• Nucleosides and nucleotides, the pentose
sugar exists in the furanose form,
meaning it adopts a five-membered ring
structure.
33
Phosphodiester Linkage
Nucleotides are joined together by phosphodiester linkage between 5' and 3' carbon atoms of the
pentose sugar.
34
Double stranded helical structure for DNA
36
Ribonucleic Acid (RNA)
37
DNA vs. RNA
38
Functions of DNA
1.Genetic Information Storage: DNA holds the instructions for building and maintaining an organism.
2.Replication: DNA can duplicate itself to pass genetic information to new cells and generations.
3.Gene Expression Regulation: DNA sequences control when and how genes are turned on or off.
4.Mutation and Evolution: Changes (mutations) in DNA contribute to genetic variation and evolution.
Functions of RNA
1.Protein Synthesis: RNA helps translate genetic instructions into proteins (mRNA, tRNA, rRNA).
2.Gene Regulation: Some RNAs (e.g., miRNA, siRNA) help control gene activity.
3.Enzymatic Activity: Certain RNA molecules (ribozymes) act as catalysts in biochemical reactions.
4.Genetic Material in Some Viruses: RNA serves as the genetic material in RNA viruses like SARS-
CoV-2.
39
LIPIDS
40
Biological Importance of Lipids
Classification of Lipids
Lipids are classified into three broad categories on the basis of their molecular
structure and the hydrolysis products.
(i) Simple Lipids: Those lipids which are esters and yield fatty acids and alcohols
upon hydrolysis are called simple lipids. They include oils, fats and waxes.
(ii) Compound Lipids: Compound lipids are esters of fatty acids and alcohol with
additional compounds like phosphoric acid, sugars, proteins etc.
(iii) Derived Lipids: Compounds which are formed from oils, fats etc. during
metabolism. They include steroids and some fat-soluble vitamins.
41
Simple Lipids
The simple lipids are esters.
They are subdivided into two groups, depending on
the nature of the alcohol component.
1. Fats and oils (triglycerides):
• They are the esters of glycerol with three
molecules of long chain fatty acids. On
hydrolysis of a triglyceride molecule, one
molecule of glycerol and three molecules of
higher fatty acids.
• By definition, a fat is that triglyceride which is
solid or semisolid at room temperature and an
oil is the one that is liquid at room temperature.
2. Waxes:
• They are the esters of fatty acids with long chain
monohydroxy alcohols 26 to 34 carbons atoms.
• They form a protective coating on the surfaces of
animals and plants.
• Some insects also secrete waxes. The main
constituent of bee's wax obtained from the honey
comb of bees is myricyl palmitate.
42
Compound Lipids
43
Phospholipids
Derived Lipids
Basic Structure
• These biomolecules contain two carbon atoms, often in
a simple chain, usually attached to other elements like
hydrogen, oxygen, or sulfur.
• The two carbon atoms are commonly part of a
hydrocarbon chain or as part of a functional group
(such as a carboxyl group in acetic acid).
Acetic acid
Functional Groups:
• The two carbons are often bonded to:
• Hydrogen (e.g., in acetic acid).
• Oxygen (e.g., in acetyl-CoA, where the carbonyl
group is present).
• Sulfur (in coenzyme A derivatives like acetyl-CoA).
Acetyl-CoA
45
Role in Metabolism
46
47