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Identication of two human dimethylarginine dimethylaminohydrolases with distinct tissue distributions and homology with microbial arginine deiminases
James M. LEIPER*1, Joanne SANTA MARIA*, Ann CHUBB, Raymond J. MACALLISTER*, Ian G. CHARLES, Guy St. J. WHITLEY and Patrick VALLANCE*
*Centre for Clinical Pharmacology, The Rayne Institute, University College London, 5 University Street, London WC1E 6JJ, U.K., Department of Cellular and Molecular Sciences, St. Georges Hospital Medical School, Cranmer Terrace, London SW17 0RE, U.K., and Wolfson Institute for Biomedical Research, The Rayne Institute, University College London, 5 University Street, London WC1E 6JJ, U.K.
Methylarginines inhibit nitric oxide synthases (NOS). Cellular concentrations of methylarginines are determined in part by the activity of dimethylarginine dimethylaminohydrolase (DDAH ; EC 3.5.3.18). We have cloned human DDAH and identied and expressed a second novel DDAH isoform (DDAH I and II respectively). DDAH I predominates in tissues that express neuronal NOS. DDAH II predominates in tissues expressing
endothelial NOS. These results strengthen the hypothesis that methylarginine concentration is actively regulated and identify molecular targets for the tissue and cell-specic regulation of methylarginine concentration. Key words : rapid amplication of cDNA ends, symmetrical dimethylarginine, transcription and PCR.
INTRODUCTION
Arginine residues in proteins are methylated by a family of protein arginine N-methyltransferases (PRMTs) [1]. These enzymes catalyse the methylation of guanidino nitrogens of arginine to produce NG-monomethyl--arginine (-NMMA), NG,NG-dimethyl--arginine (asymmetrical dimethylarginine ; ADMA) and NG,NhG-dimethyl--arginine (symmetrical dimethylarginine ; SDMA). Proteolysis of proteins containing these residues releases free methylarginines [2]. Although the biological role of methylarginine residues in proteins is unclear, free NMMA and ADMA, but not SDMA, are inhibitors of all three isoforms of nitric oxide synthase (NOS) and might alter NOS activity in health or disease [3]. Free methylarginines are found in cell cytosol, plasma and tissues ; their concentrations dier between tissues and between regions within a single tissue or organ [35]. Elevated concentrations of ADMA have been detected in endothelial cells repopulating blood vessels damaged by balloon injury [6], in the plasma of patients or experimental animals with hyperlipidaemia [7], renal failure [3] or atherosclerosis [8], and in patients with schizophrenia [9] or multiple sclerosis [10]. Altered biosynthesis of nitric oxide (NO) has been implicated in the pathogenesis of all of these conditions and it is possible that the accumulation of endogenous ADMA underlies the inhibition of NO generation. Conversely, a decrease in the plasma concentration of methylarginine, which is correlated with a decrease in blood pressure, has been observed in normal pregnancy [11]. The production of methylarginines is probably an obligatory step in protein turnover ; rates of production can show tissuespecic and temporal variations [12] that might lead to uctuations in their intracellular concentrations. However, -NMMA and ADMA, but not SDMA, are actively metabolized to citrulline and methylamines by the action of dimethylarginine dimethylaminohydrolase (DDAH) [13]. Certain tissues that ex-
press NOS also express DDAH [14]. The pharmacological inhibition of DDAH increases the concentration of ADMA in endothelial cells and inhibits the NO-mediated endotheliumdependent relaxation of blood vessels [4]. These observations suggest that DDAH activity ensures that the local concentration of ADMA does not normally rise suciently to aect NO generation and that changes in DDAH activity could alter NOS activity. However, we and others have also found that DDAH activity and DDAH protein expression are not always correlated ; this led us to speculate that there might be more than one isoform of the enzyme. In this paper we report the cloning of the human DDAH cDNA and present its derived amino acid sequence. In addition, we have discovered a novel DDAH isoform, which we have named DDAH II. Recombinant expression of DDAH II conrms that this protein is a functional homologue of DDAH (now termed DDAH I). The DDAH I and II isoforms show distinct tissue distributions with some relationship to NOS isoforms. The existence of two isoforms of DDAH with dierent tissue distributions suggests that the regulation of methylarginine levels is of considerable biological importance. During the preparation of this paper a sequence identical with that of DDAH II has been entered into the Genbank database (accession number AF070667) and identied as a putative DDAH homologue.
Abbreviations used : ADMA, N G,N G-dimethyl-L-arginine (asymmetrical dimethylarginine) ; DDAH, dimethylarginine dimethylaminohydrolase ; L-NMMA, N G-monomethyl-L-arginine ; NOS, nitric oxide synthase ; ORF, open reading frame ; PRMT, protein arginine methyltransferase ; SDMA, N G,Nh G-dimethylL-arginine (symmetrical dimethylarginine) ; RACE, rapid amplication of cDNA ends. 1 To whom correspondence should be addressed at the Centre for Clinical Pharmacology, The Rayne Institute (e-mail james.leiper!ucl.ac.uk). # 1999 Biochemical Society
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Table 1
Abbreviations : eNOS, endothelial NOS ; nNOS, neuronal NOS. Name HDDAHI.1 HDDAHI.2 HDDAHI.3 HDDAHI.4 HDDAHII.1 HDDAHII.2 HDDAHII.3 HDDAHII.4 RDDAHI.1 RDDAHI.2 HNNOS.1 HNNOS.2 HENOS.1 HENOS.2 Oligo d(T) Anchor Anchor Sequence GGT TGA CAT GAT GAA AGA AGC CAG CAC CCC GTT GAT TTG TC GCT TCT TTC ATC ATG TCA ACC CCC AAC AAA GGG CAC GTC TTG GAT CGA ATT CAG GAT GGG GAC GCC GGG G GAC TTC TAG AGC TGT GGG GGC GTG TG CTC AGC TCC CTC TGC TTG GTG GAG GGA GGA TTC ACC CAG TGG TCC GCG GGA TCC ATG GCC GGC CTC CGC TCG GTC TAG ATC AAG AGT CTG TCT T CTG CTG ATG TCC TCA AAG CCA TCC TCT GTC CCG CGC TTA CAA ACT TGC CAA CCA ACG TCC TGC AGA CCG TGC GGC GGA CCT GAG TCG GGC AGC CGC GAC CAC GCG TAT CGA TGT CGA CTT TTT TTT TTT TTT TTV GAC CAC GCG TAT CGA TGT CGA C Details Homologous with nt 303324 of human DDAH I Homologous with nt 454435 of human DDAH I Homologous with nt 324303 of human DDAH I Homologous with nt 682703 of human DDAH I Homologous with nt k2 to 15 of human DDAH II encoding an upstream Eco RI site Homologous with nt 858840 of human DDAH II encoding a downstream Xba I site Homologous with nt 813834 of human DDAH II Homologous with nt 10031024 of human DDAH II Homologous with nt k12 to 12 of rat DDAH I Homologous with nt 872844 of rat DDAH I Homologous with nt 40794102 of human nNOS Homologous with nt 43534330 of human nNOS Homologous with nt 33793402 of human eNOS Homologous with nt 36903667 of human eNOS 5h/3h RACE oligo d(T) anchor primer 5h/3h RACE anchor primer
of human DDAH I cDNA fused downstream of 160 bp of unknown sequence (accession number aa376335). Human kidney poly(A)+ RNA was reverse-transcribed from an oligo(dT) primer, after which human DDAH I cDNA was PCR amplied in two PCR reactions incorporating either HDDAH I.1 and RDDAH I.1 or HDDAH I.2 and RDDAH I.2 (Table 1). For 5h RACE, human kidney poly(A)+ mRNA was reverse-transcribed with primer HDDAH I.3, RNA was digested with RNase H and cDNA was puried with a HighPure DNA purication kit (Boehringer). Puried cDNA was poly(A)-tailed by incubation with terminal transferase in the presence of dATP and used directly in PCR reactions incorporating Oligo(dT) Anchor and HDDAH I.4. For 3h RACE, human poly(A)+ RNA was primed with Oligo(dT) Anchor and reverse-transcribed before PCR with oligonucleotides HDDAH I.5 and Anchor. PCR products were cloned into pCRTOPO2.1 (Invitrogen) and inserts were sequenced with a T7 Sequenase kit (Amersham). To search for novel isoforms of DDAH, the database of translated EMBL open reading frames (ORFs) was interrogated with the rat DDAH I peptide sequence. This search identied a hypothetical mouse ORF (accession number O08972) that has the capacity to encode a protein of 228 amino acid residues with 63 % similarity to rat DDAH I. A search of the database of expressed sequence tags with the nucleotide sequence encoding the hypothetical mouse protein identied numerous overlapping human sequences (accession number aa134375) that contained an ORF of 858 bp with the potential to encode a 285-residue protein 62 % identical with human DDAH I. Hereafter this novel sequence is referred to as DDAH II.
-thiogalactoside (1 mM nal concentration) and incubation was continued for 2 h. After induction, cells were collected by centrifugation, weighed and resuspended in ice-cold assay buer (100 mM Na HPO , pH 6.5) at 1 g of cells\ml. Aliquots of total # % cell protein were resolved by SDS\PAGE [15 % (w\v) gel] before either staining of total protein with Coomassie Blue or transfer to PVDF membrane and Western blotting with an anti-PentaHis antibody (Qiagen).
DDAH assay
E. coli cells were disrupted by sonication (six times, 10 s each, at 10 s intervals) and centrifuged at 50000 g to separate soluble material from insoluble cell debris. Aliquots of lysates were assayed for DDAH activity with either a radiochemical assay for the metabolism of "%C-labelled -NMMA or a colorimetric assay for citrulline production. For the radiochemical assay, 50 l of bacterial cell lysate was incubated at 37 mC for 60 min with 50 l of 100 mM Na HPO , pH 6.5, containing 0.02 mCi of -["%C]# % NMMA and 1 M10 mM unlabelled -NMMA, as described previously [4]. After incubation, samples were prepared for determination of ["%C]citrulline content by vortex-mixing with 1 ml of 50 % (w\v) Dowex 50X8-400 and centrifugation at 10 000 g for 5 min ; 500 l of the supernatant was then mixed with 5 ml of liquid-scintillation uid and the "%C content was determined. For colorimetric assays, 50 l of bacterial cell lysate was incubated at 37 mC for 60 min with 50 l of 100 mM Na HPO , # % pH 6.5, containing 8 mM -NMMA, ADMA, SDMA (all from Calbiochem) or -arginine (Sigma), or with buer alone. After incubation, citrulline content was determined as described previously [13]. Under the assay conditions used, the production of citrulline was proportional to the amount of recombinant DDAH II added and was linear with time. All assays were performed in duplicate. The mean and S.E.M. were calculated from the results of four independent experiments.
Recombinant expression
The human DDAH II ORF was PCR-amplied from oligo(dT)primed human kidney cDNA by using oligonucleotides HDDAH II.1 and HDDAH II.2. The product was digested with EcoRI and XbaI, which cut at unique sites within the oligonucleotides ; it was then ligated into EcoRIXbaI-digested pPROX.HTa (Life Technologies) and transformed into Escherichia coli DH5. A positive clone was identied and the insert was sequenced on both strands. For expression of recombinant human DDAH II, E. coli cells were grown in liquid culture at 25 mC to a D of '!! 0.50.6. Expression was induced by the addition of isopropyl # 1999 Biochemical Society
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Figure 1 II
Amino acid alignment of rat and human DDAH I with human DDAH
The derived amino acid sequences of rat and human DDAH I and human DDAH II were aligned by using the CLUSTAL program. Amino acid identities are indicated by asterisks, highly conservative substitutions by colons and conservative substitutions by full stops.
Figure 3
Labelled probes specic for human DDAH I, DDAH II, neuronal NOS, endothelial NOS and actin were sequentially hybridized to a commercially available multiple-tissue Northern blot. The migration of molecular mass markers is indicated at the left.
Figure 2
Aliquots of E. coli transfected with either empty vector (lanes 1 and 3) or vector containing human DDAH II cDNA (lanes 2 and 4) were resolved by SDS/PAGE [15 % (w/v) gel]. Gels were either stained for total protein with Coomassie Blue (lanes 1 and 2) or processed for Western blotting (lanes 3 and 4) as described in the Materials and methods section. The lled arrow indicates the recombinant protein that is specically recognized by the anti-PentaHis antibody. The migration of molecular mass markers is indicated at the left.
was assembled. The 858 bp ORF is 90 % identical with rat DDAH I ORF (results not shown) and encodes a polypeptide of 285 residues that is 95 % identical with the rat protein (Figure 1). In previous studies we have observed that in some tissues that have high levels of DDAH activity, a relatively low level of DDAH immunoreactive protein is detectable. These observations suggested to us the existence of additional DDAH isoforms. To test this hypothesis we performed database searches to identify DDAH-like sequences. A search of the translations of EMBL ORFs database with the rat DDAH I amino acid sequence identied a mouse ORF encoding a protein with 63 % similarity with rat DDAH over 228 residues. Further database searching identied a human cDNA of 2000 bp containing an ORF of 858 bp with the potential to encode a protein of 285 residues. This ORF was 63 % identical with human DDAH I at the
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Table 2
A human multiple Northern blot was probed sequentially with probes specic for human DDAH I and DDAH II (see Figure 3). Hybridization signals were quantied by phosphorimaging and corrected for -actin signals to correct for RNA loading. Signals are expressed as percentages of the maximum level of expression for each isoform. Content of isoform (% of maximum) Tissue Heart Brain Placenta Lung Liver Skeletal muscle Kidney Pancreas DDAH I 15 56 12 16 42 27 100 47 DDAH II 100 19 56 36 26 25 70 34
nucleotide level (results not shown) and the predicted protein is 62 % similar to human DDAH I at the amino acid level (Figure 1). Like DDAH I, this protein (which we have named DDAH II) seems to be highly conserved across mammalian species, with 98 % similarity between murine and human DDAH II amino acid sequences (results not shown).
Figure 4
Amino acid alignment of human DDAH I and II with Pseudomonas putida arginine deiminase
The derived amino acid sequences of human DDAH I and II were aligned with the amino acid sequence of P. putida arginine deiminase (P.p. Deim.). Similarity was highest within the 72-residue region shown (residues 123194 of DDAH I and 121192 of DDAH II). Amino acid identities are indicated by asterisks, highly conservative substitutions by colons and conservative substitutions by full stops. Boxed regions indicate motifs highly conserved between arginine deiminases [20]. # 1999 Biochemical Society
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have important functions other than, or in addition to, the regulation of NOS. Consistent with this possibility is our recent identication of functional homologues of DDAH in several microbial species that do not express NOS [19].
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