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IN ACTION
Data analysis and graphics with R
Robert I. Kabacoff
MANNING
R in Action
R in Action
Data analysis and graphics with R
ROBERT I. KABACOFF
MANNING
Shelter Island
For online information and ordering of this and other Manning books, please visit
www.manning.com. The publisher offers discounts on this book when ordered in quantity.
For more information, please contact
Many of the designations used by manufacturers and sellers to distinguish their products are
claimed as trademarks. Where those designations appear in the book, and Manning
Publications was aware of a trademark claim, the designations have been printed in initial caps
or all caps.
Recognizing the importance of preserving what has been written, it is Manning’s policy to have
the books we publish printed on acid-free paper, and we exert our best efforts to that end.
Recognizing also our responsibility to conserve the resources of our planet, Manning books
are printed on paper that is at least 15 percent recycled and processed without the use of
elemental chlorine.
ISBN: 9781935182399
Printed in the United States of America
1 2 3 4 5 6 7 8 9 10 -- MAL -- 16 15 14 13 12 11
brief contents
Part I Getting started .......................................... 1
1 ■ Introduction to R 3
2 ■ Creating a dataset 21
3 ■ Getting started with graphs 45
4 ■ Basic data management 73
5 ■ Advanced data management 91
v
vi BRIEF CONTENTS
1 Introduction to R
1.1 Why use R? 5
3
vii
viii CONTENTS
2 Creating a dataset
2.1 Understanding datasets
21
22
2.2 Data structures 23
Vectors 24 ■ Matrices 24 ■ Arrays 26 ■ Data frames 27
Factors 30 ■ Lists 32
2.3 Data input 33
Entering data from the keyboard 34 Importing data from a delimited text
■
6 Basic graphs
6.1
119
Bar plots 120
Simple bar plots 120 Stacked and grouped bar plots 121
■ ■ Mean bar plots 122
Tweaking bar plots 123 Spinograms 124
■
7 Basic statistics
7.1
141
Descriptive statistics
A menagerie of methods 142
142
■ Descriptive statistics by group 146
Visualizing results 149
7.2 Frequency and contingency tables 149
Generating frequency tables 150 Tests of independence 156■
8 Regression
8.1
173
The many faces of regression
Scenarios for using OLS regression 175
174
■ What you need to know 176
8.2 OLS regression 177
Fitting regression models with lm() 178 Simple linear regression 179
■
9 Analysis of variance
9.1
219
A crash course on terminology 220
9.2 Fitting ANOVA models 222
The aov() function 222 ■ The order of formula terms 223
9.3 One-way ANOVA 225
Multiple comparisons 227 ■ Assessing test assumptions 229
9.4 One-way ANCOVA 230
Assessing test assumptions 232 ■ Visualizing the results 232
9.5 Two-way factorial ANOVA 234
9.6 Repeated measures ANOVA 237
9.7 Multivariate analysis of variance (MANOVA) 239
Assessing test assumptions 241 ■ Robust MANOVA 242
9.8 ANOVA as regression 243
9.9 Summary 245
10 Power analysis
10.1
246
A quick review of hypothesis testing 247
10.2 Implementing power analysis with the pwr package 249
t-tests 250 ANOVA 252 Correlations 253
■ ■ ■ Linear models 253
Tests of proportions 254 Chi-square tests 255
■ ■ Choosing an appropriate effect
size in novel situations 257
10.3 Creating power analysis plots 258
10.4 Other packages 260
10.5 Summary 261
11 Intermediate graphs
11.1 Scatter plots 264
Scatter plot matrices 267
263
factors 344 Rotating factors 345 Factor scores 349 Other EFA-related
■ ■ ■
packages 349
14.4 Other latent variable models 349
14.5 Summary 350
16 Advanced graphics
16.1
373
The four graphic systems in R 374
16.2 The lattice package 375
Conditioning variables 379 Panel functions 381
■ ■ Grouping variables 383
Graphic parameters 387 Page arrangement 388
■
index 435
Other documents randomly have
different content
The Project Gutenberg eBook of Tested
Recipes: Waterless Cooking for Better Meals,
Better Health
This ebook is for the use of anyone anywhere in the United States
and most other parts of the world at no cost and with almost no
restrictions whatsoever. You may copy it, give it away or re-use it
under the terms of the Project Gutenberg License included with this
ebook or online at www.gutenberg.org. If you are not located in the
United States, you will have to check the laws of the country where
you are located before using this eBook.
Language: English
Copyright 1957 by Tested Recipe Institute, Inc., Long Island City 1, N.Y.
The Buckeye Co., Wooster, Ohio
SUBJECT INDEX
page
STAINLESS STEEL WARE
Advantages of Stainless Steel Ware 28
How to Care for Stainless Steel Ware 1
Au Gratin Vegetables 19
Bananas,
As garnish 26
Pan Fried 10, 13
BEEF
Frizzled Beef 12
Pot Roast with Vegetables 8
Roasting Timetable 6
Standing Rib Roast 7
Swedish Meat Balls 9
Swiss Steak 11
Beets, Harvard 20
Busy Day Supper Dish 22
Care of Stainless Steel Cookware 1
Chicken, Fried 14
Chili Con Carne 15
Christmas Plum Pudding 27
Creamed Vegetables 19
DESSERTS
Apricot Whip 26
Pineapple Upside Down Cake 25
Plum Pudding 27
Eggplant, Pan-Fried 19
Eggs Benedict 23
Fish, Fried Fillets 16
Food Buying Hints 2
Frosting, Pastel Plum 24
Frozen Meats 6
Frozen Vegetables 19
Gravy, Quick 22
Ham, Diced
Busy Day Supper Dish 22
Hollandaise Sauce 23
Jelly, Plum 24
Lamb, Roasting Timetable 6
Meal Planning 3, 4
Meats 5-6
Pineapple Upside Down Cake 25
Plum Jelly 24
Plum Pudding 27
PORK
Roasting Timetable 6
Stuffed Pork Chops 13
Quick Meal Preparation 4
Roasting Timetable 6
SAUCES
Custard Sauce 26
Hollandaise Sauce 23
Tartar Sauce 16
Spaghetti, Italian 17
Summer Squash, Pan-Fried 19
VEAL
Roasting Timetable 6
Veal in Mushroom Sauce 21
VEGETABLES
Frozen Vegetables 19
General Cooking Hints 18-19
Harvard Beets 20
Time-Table 19
Vegetable Platter 20
1
HOW TO CARE FOR STAINLESS COOKWARE
2
SPEND Wisely, SPEND Less!
Compare Prices
Avoid Waste
Butter or Margarine?
These two table fats are equivalent in food value, and may be used
interchangeably in any recipe.
3
Plan TO PLEASE!
Plan meals when you are a little hungry ... your culinary imagination
is better then. Articles in magazines and newspapers help provide
inspiration when you need it, for greater menu variety.
When there are small children in the family, it is easier to plan meals
around the type of food small-fry can eat. Adults, too, enjoy this
simple food, which can be served in attractive and tempting
combinations.
Plan the whole day’s meals as a unit. This is the only way you can be
sure of providing the proper amount of the right kind of food.
These are the foods needed every day for good health:
A tray of raw relishes ... carrot sticks, celery curls, green pepper
rings, radish roses and cucumbers cut lengthwise into fingers ... may
pinch-hit for the salad occasionally.
Used with discretion, food coloring is a boon to the cook. Add a few
drops of yellow coloring to chicken gravy; a few drops of red
coloring to step up the eye appeal of desserts made with canned
cherries.
4
SUPPER IN A Half-hour!
Every homemaker needs two or three quick supper dishes “to fall
back on” when kitchen time is limited. They can be hearty and
attractive, as well as inexpensive.
Following are four such supper menus, easily prepared in about half
an hour. Three of them are planned around canned meat, dried beef
and corned beef, which should always be kept on hand for
emergency meals.
• • • • • • •
• • • • • • •
• • • • • • •
PREPARING Meats
Cooking meat at a low temperature retains juices, reduces the
amount of shrinkage and improves the flavor. The theory that
searing seals-in juices has been disproved.
PORK—All pork cuts are tender but must be cooked to the well-
done stage. Roasting is suitable for any of the larger cuts. Pork
chops and steaks should be cooked by braising for best results.
Poultry and all meat except pork is roasted at 325 degrees. Roast
pork at 350 degrees. Times given below are approximate, varying
with size and shape of roast. A meat thermometer is recommended
for accurate determination of degree of doneness.
7
STANDING RIB ROAST
Select a Standing Rib Roast. Place fat side up in Dutch Oven. Do not
add water; do not cover; do not baste. Roast in moderate oven,
325°F.
Tomato-Bacon Garnish
MENU
8
BEEF POT ROAST and VEGETABLES
1 tablespoon fat
3 to 4-pound chuck roast
salt and pepper
1½ cups water
4 medium onions
8 small carrots
4 medium potatoes
3 tablespoons flour
1. Melt fat in Dutch oven. Brown meat on all sides in hot fat. Season
generously with salt and lightly with pepper.
2. Add water; cover and cook over low heat about 2 hours until
meat is nearly tender. Add onions; cook 10 minutes. Add carrots and
potatoes; cook 30-35 minutes longer, or until all vegetables are
tender.
4. Blend flour with ⅓ cup water; stir into boiling stock. Stir
constantly until thickened. Season, if necessary, with salt. This
makes generous servings for 4 with enough meat left over for
another meal.
9
SWEDISH MEAT BALLS
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