Topic 2 Atomic Structure and Periodic Table Notes WM
Topic 2 Atomic Structure and Periodic Table Notes WM
2.1 know the structure of an atom in terms of electrons, protons and neutrons
2.2 know the relative mass and charge of protons, neutrons and electrons
2.3 know what is meant by the terms ‘atomic (proton) number’ and ‘mass number’
2.4 be able to use the atomic number and the mass number to determine the number of each type of subatomic
particle in an atom or ion
2.5 understand the term ‘isotope’
2.6 understand the basic principles of a mass spectrometer and be able to analyse and interpret mass spectra
to:
i deduce the isotopic composition of a sample of an element
ii calculate the relative atomic mass of an element from relative abundances of isotopes and vice versa
iii determine the relative molecular mass of a molecule, and hence identify molecules in a sample
iv understand that ions in a mass spectrometer may have a 2+ charge
2.7 be able to predict mass spectra, including relative peak heights, for diatomic molecules, including chlorine,
given the isotopic abundances
2.8 be able to define first, second and third ionisation energies and understand that all ionisation energies are
endothermic
2.9 know that an orbital is a region within an atom that can hold up to two electrons with opposite spins
2.10 understand how ionisation energies are influenced by the number of protons in the nucleus, the electron
shielding and the sub-shell from which the electron is removed
2.11 know that ideas about electronic structure developed from:
i an understanding that successive ionisation energies provide evidence for the existence of quantum shells
and the group to which the element belongs
ii an understanding that the first ionisation energy of successive elements provides evidence for electron
sub-shells
2.12 be able to describe the shapes of s and p orbitals
2.13 know that orbitals in sub-shells:
i each take a single electron before pairing up
ii pair up with two electrons of opposite spin
2.14 be able to predict the electronic configuration of atoms of the elements from hydrogen to krypton inclusive
and their ions, using s, p, d notation and electron-in-boxes notation
2.15 understand that electronic configuration determines the chemical properties of an element
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2.16 know that the Periodic Table is divided into blocks, such as s, p and d, and know the number of electrons that
can occupy s, p and d sub-shells in the first four quantum shells
2.17 be able to represent data, in a graphical form (including the use of logarithms of first ionisation energies on
a graph) for elements 1 to 36 and hence explain the meaning of the term ‘periodic property’
2.18 be able to explain:
i the trends in melting and boiling temperatures of the elements of Periods 2 and 3 of the Periodic Table in
terms of the structure of the element and the bonding between its atoms or molecules
ii the general increase and the specific trends in ionisation energy of the elements across Periods 2 and 3 of
the Periodic Table
iii the decrease in first ionisation energy down a group
Our current understanding of the structure of atoms is influenced by the theories put forward by
scientists such as J.J Thomson (discovered electrons in 1897), Ernest Rutherford (discovered
proton in 1917) and James Chadwick (discovered the neutron in 1932).
STRUCTURE OF AN ATOM
• An atom is the smallest, electrically neutral particle of an element that can take part in a
chemical change.
• An atom comprises of subatomic particles protons, neutrons and electrons.
• Protons and neutrons, together known as nucleons, are found in the nucleus which is the
center of the atom.
• Electrons exist in energy levels surrounding the nuclei. The energy levels are called
quantum shells.
• An atom gets its chemical properties from the number of electrons and arrangement of
electrons in the atom.
Table A. The structure of the atom in terms of the three sub atomic particles
Relative Relative
Particle Symbol Charge/C Mass/g
charge mass
Proton p +1.60 x 10 -19 +1 1.67 x 10-24 1
Neutron n 0 0 1.67 x 10-24 1
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• The mass of electrons are negligible, hence the mass of the atoms are determined by the
mass of nucleons.
ISOTOPES
• Isotopes are atoms of the same element having the same number of protons but different
number of neutrons.
• Example: Carbon has three isotopes, 12C, 13C and 14C. They all have the same number of
protons but different number of neutrons.
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• Isotopes always have the same chemical properties because the number of electrons is the
same.
• They have slightly different physical properties as they have different number of neutrons.
Example: Isotopes with fewer neutrons will have lower masses, lower densities, faster rate
of diffusion, lower melting and boiling points.
• Relative atomic masses measured by chemical methods rarely produce whole numbers.
This is because isotopes of the same element exist in different proportions in nature.
EXERCISE 1
A 19 21 19
B 20 Neutral 40
C + 11 23
D 6 6 Neutral
E 92 Neutral 235
F 6 6 13
G 16 2- 16
H 27
Al3+
CHECKPOINT 1
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2A - 2 MASS SPECTROMETRY AND RELATIVE MASSES OF ATOMS, ISOTOPES
AND MOLECULES SPECIFICATION
OBJECTIVE 2.6 &
2.7
• A mass spectrometer is an instrument that was invented by F.W. Aston in 1919. It can be used
to find the relative masses of isotopes of atoms, molecules or fragments of molecules. This
gave chemists an accurate method of comparing the relative masses of atoms and molecules.
And to find the relative abundance of the isotopes in a sample of an element.
• The mass spectrometer consists of an ion source, an analyser and a detector.
• Inside the spectrometer there is a high vacuum which allows ionized atoms and molecules
from the chemical being tested to be studied without interference from atoms and molecules
in the air.
• Mass spectrometry can be used for:
o Carbon dating – to measure the amount of C-14 in a substance and hence to
determine the age of the substance
o Pharmaceutical industry - to identify the new compounds in possibly new drugs and
to identify how long they would stay in the body
o Testing athletes urine for drugs or banned substances such as anabolic steroids
o Studying the composition of the surface of Mars and to look for molecules that might
suggest that life existed on the planet by sending probes to Mars.
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There are five main processes occurring in a mass spectrometer. They are:
1. Vapourisation: the sample is turned into gas or vapourised using an electrical heater.
X(s) → X(g)
X(l) → X(g)
2. Ionization: gas particles are bombarded with a stream of high energy electrons from an
electron gun, to ionize them. Electrons are knocked off the particles, producing
uni-positively charged ions
X(g) → X+(g) + e-
3. Acceleration: the positive ions are accelerated by an electric field towards the magnetic
field, which provides the energy for the particles to accelerate.
4. Deflection: The positive ions’ path is altered with a magnetic field. For a given magnetic
field, only ions with a particular mass/charge ratio will be detected. Lighter ions have less
momentum and are deflected more than heavier ions. Ions with a large m/z ratio deflected
less than ions with a smaller m/z ratio.
5. Detection: the ions are detected by the detector, which is linked to an amplifier and then
to a recorder. This converts the current to a peak which is shown in a mass spectrum.
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Mass spectrum
The mass spectrum could be used to calculate the relative atomic mass of an element.
WORKED EXAMPLE 1
Calculate the average relative atomic mass of neon using the above information. Out of every
100 atoms 90.92 are 20Ne, 0.26 are 21Ne and 8.82 are 22Ne.
WORKED EXAMPLE 2
What is the relative atomic mass of chlorine, if it exists in two isotopic forms shown in the
table below?
Isotope Relative isotopic mass Relative abundance
35Cl 35 75
17
37Cl 37 25
17
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EXERCISE 2
Question 1: Calculate the relative atomic mass of sulfur from the following isotopic percentages
32S 95% 33S 1% 34S 4%
Question 2: The neon element has three isotopes. They are 90.92% of 20Ne, 0.26% of 21Ne and
8.82% of 22Ne. Calculate relative atomic mass.
Question 3: Calculate the relative atomic mass of boron using the mass spectrum.
81.3
18.7
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Question 4: Calculate the relative atomic mass of Zirconium using the mass spectrum.
zirconium-90: 51.5
zirconium-91: 11.2
zirconium-92: 17.1
zirconium-94: 17.4
zirconium-96: 2.8
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Question 6: The mass spectrum of bromine vapour is shown below
(a) What are the relative isotopic masses of the two isotopes present in bromine?
(b) Identify the particles responsible for the peaks at m/z 158, 160 and 162
(c) Deduce the relative abundance of the two isotopes and explain the relative heights of the
three peaks at m/z 158, 160 and 162
CHECKPOINT 2
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If an element exists as diatomic molecules, like chlorine, then the spectrum would contain peaks
for the separate atomic ions as well as for the molecular ions.
If diatomic substances are analysed by mass spectrometry, you can obtain the relative molecular
mass of the element or compound by observing the peaks with the largest m/z ratios (assuming a
value of z=1).
Molecular ions are formed by the removal of an electron from the whole molecule. Atomic ions
are formed when the Cl—Cl bond is broken by a high energy beam of electron.
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• There is 3 in 4 chance of selecting a 35Cl from a sample of chlorine atom. This means total
9
chance of two 35Cl atoms combining together is ¾ x ¾ = 16
• There is 1 in 4 chance of selecting a 37Cl atom. This means that the chance of 37Cl combining
3
with a 35Cl atom is ¼ x ¾ = 16
3
• The chance of a 35Cl atom combining with a 37Cl atom is also 16
• This means that the total chance of 37Cl and 35Cl combining together in any order is
3 6
2 X 16 = 16
1
• The chance of two 37Cl atoms combining together is ¼ x ¼ = 16
9 6 1
• : : in whole number ratio is 9 : 6 : 1
16 16 16
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QUANTUM SHELLS
Atoms can be identified by its mass of their nucleons; however, it is their electronic structure
which determines the behavior and chemical properties. Max Planck first presented the quantum
theory in 1900. We can use this theory to describe the arrangement of electrons around the nuclei.
According to this theory electrons exist around the nucleus in certain regions of the atom called
shells or energy levels. These well-defined energy levels are called quantum shells.
Each shell is described by a number known as principle quantum number (n). The larger the value
of n, the further the electron is from the nucleus.
• The energy levels or quantum shells ( apart from the first one) are divided into sub-shells
of slightly different energy levels. Each subshell is described by a letter s, p, d and f.
• The energy of each sub-shell increases from s to p to d to f.
1 1s
2 2s 2p
3 3s 3p 3d
4 4s 4p 4d 4f
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s- orbital
A cross section
through an s - orbital
p- orbital
d- orbital
Each orbital can accommodate a maximum of two electrons in which one electron spins clockwise
and the other spins anti – clockwise.
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Table showing the number of electrons that fit in each type of sub – shell
Table showing the sub – shells and electrons in the first four energy levels
Shell Principle Quantum number (n) Sub – shell Total number of electrons
1st 1 1s 2
2nd 2 2s 2p 8
3rd 3 3s 3p 3d 18
4th 4 4s 4p 4d 4f 32
ELECTRONIC CONFIGURATION
Electrons are added to the sub shells according to the Aufbau Principle. The following rules must
be applied when writing electronic configuration.
• Electrons fill orbitals singly before they start pairing up according to Hund’s rule
• two electrons cannot occupy the same orbital unless they have opposite spin.
This is due to the repulsion between electron pairs.
• rule
• The sub shells which are half filled or completely filled with electrons are more stable.
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When writing electronic configuration, the electronic structure of an atom can be represented in
two ways:
1. s p d f notation
2. electron box notation
EXAMPLE 1
Write down the electronic configuration of 6C using spdf notation and box notation
s p d f notation :
Box notation :
1s 2s 2p
A shortened version of electronic structure can be used to represent electronic configuration. That
is, using noble gas electronic configuration
EXAMPLE 2
Write down the electronic configuration of 16S using spdf notation and box notation
s p d f notation :
Box notation :
1s 2s 2p 3s 3p
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EXERCISE 3
Write electronic configuration for elements from hydrogen, H to Krypton, Kr using both s p d f
notation and box notation.
H
1
He
2
Li
3
Be
4
B
5
C
6
N
7
O
8
9 F
10 Ne
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11 Na
12 Mg
13 Al
14 Si
15 P
16 S
17 Cl
18 Ar
19 K
20 Ca
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Sc
21
22 Ti
23 V
24 Cr
25 Mn
26 Fe
27 Co
28 Ni
29 Cu
30 Zn
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31 Ga
32 Ge
33 As
34 Se
35 Br
36 Kr
The electronic structure of Cr and Cu are exceptional. In both cases the outer subshells are either
completely full or half full. This is achieved by donating one of their 4s electrons to the 3d sub shell
as this makes the d- sub shell to be half filled or completely filled.
CHECKPOINT 3
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When an atom loses or gains an electron to form ions, the electronic structure changes.
EXAMPLE 1
Write down the electronic configuration of sodium atom and sodium ion using spdf notation
EXAMPLE 2
Write down the electronic configuration of chlorine atom and chloride ion using spdf notation
Chlorine atom, 17 Cl
EXERCISE 4
b. Ca2+ :
c. Al3+ :
d. O2- :
e. Br- :
f. P3- :
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2A – 3 IONISATION ENERGIES SPECIFICATION
OBJECTIVE 2.9,
2.12, 2.13, 2.14, 2.15
IONIZATION ENERGY
• It is a measure of the energy required to remove electrons from an atom.
• There are as many ionization energies as there are electrons in the atom.
• The value of ionization energy depends on
o the distance of the electron from the nucleus, and
o the effective nuclear charge (not the nuclear charge) of the atom.
Nuclear Charge (NC) :The actual charge (relative) due to the protons in the nucleus
Effective Nuclear Charge (ENC) :The effectiveness of nuclear charge after passing through
filled shells
A simple way to compare effective nuclear charges is to knock off a + for every electron in a filled
inner level.
Always gaseous
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Its value gives an idea of how strongly the nucleus pulls on the electron being removed. The
stronger the pull, the more energy needed to remove the electron.
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• A sodium atom has 11 electrons. Its successive ionization energies are shown in the table
below.
• The places where the ionization energy has jumped significantly are underlined in the
table.
Successive ionization energies are always greater than the previous one.
• This is due to increasing attraction of the nucleus on the remaining electrons because the
electrons are being removed from an increasingly positive ion.
• This is due to removal of electron from an inner main shell, which is closer to the nucleus
on which the nuclear attraction is greater.
• This can be used to predict the group of an unknown element. The group number would
be given by counting the number of electrons removed before the first big jump. Electronic
structure can also be found using successive ionization energies.
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• The first electron to be removed is in the 3s orbital, which is the third quantum shell. So
less energy is needed to remove the electron. Therefore the first ionization energy is the
lowest.
• There is a large jump from 1st to the 2nd ionization energy. This is because the second
electron to be removed is in the 2nd quantum shell which is lower in energy than the 3rd
quantum shell
• There is steady increase in ionization energy from the 2nd to the 9th electron. This shows
that the eight electrons exist within the same quantum shell. As each successive electron
is removed from the same shell, the electron – electron repulsion within the shell
decreases. As a result, there is steady increase in ionization energy from 2nd to 9th
electron.
• The large jump from 9th to 10th electron indicates that the electron is removed from first
quantum shell (1s orbital).
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Shielding effect
• The electron in the outermost energy level
experiences more inter-electron repulsion known as
shielding.
• The greater the number of the inner shell electrons
the greater is the shielding effect (screening effect).
• The force of attraction becomes weaker.
• Less energy is required to remove the electron (lower
ionization energy).
In general the 1st ionization energy of the elements across the period increases gradually, because:
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First ionization energy of Helium is greater than Hydrogen [He >H]
• Nuclear charge is greater – one extra proton in Helium
• Extra electron has gone into the same energy level.
• Increased attraction makes the electron harder to remove.
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First ionization energy of Sulfur is less than Phosphorous [S < P]
•
CHECKPOINT 4
• In the modern periodic table the elements are arranged in order of their atomic number.
• Vertical columns in the periodic table are called groups and the horizontal rows are called
periods.
o All the elements within the period have the same number of electron shells.
Example: Elements in period 2 have 2 electron shells
o All the elements within a group have the same number of electrons in their outer
shell and they have similar properties.
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• Position of an element in the periodic table is determined by its electronic structure. The
physical and chemical properties depend on the electronic configuration.
• s – Block: elements of group 1 and 2 .Their outermost electrons are found in the s sub-
shell.
• p – Block: elements in groups 3 to 8. Outermost electrons are found in p sub-shell.
• d – Block: transition elements and are found between group 2 and 3. Outermost electrons
are found in d sub-shell.
• f – Block: lanthanides and actinides, and they have outermost electrons in the f sub-shell.
•
CHECKPOINT 5
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ATOMIC RADIUS
Atomic radius of an element is the measurement of the size of its atom. It is the distance from
the center of the nucleus to the boundary of electron cloud. Since atoms does not have a well
defined boundary, we can find the atomic radius by determining the distance between the two
nuclei and dividing by 2.
Shielding effect
- The electron in the outermost energy level experiences more inter-electron repulsion
known as shielding.
- The greater the number of the inner shell electrons the greater is the shielding effect
(screening effect).
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IONIC RADIUS
The radius of a positive ion is smaller than the element’s atomic radius. This is because as the
electrons are removed the remaining electrons are more strongly attracted to the positive
nucleus.
The radius of a negative ion is larger than the element’s atomic radius. This is because as the
electrons are gained, the number of electrons increases and therefore are bound less tightly to
the nucleus.
Both periods 2 and 3 show similar trends in their melting points and boiling points, which are linked
to changes in structure and bond strength of these elements.
The table below illustrates the changes in melting and boiling points of elements in
Periods 2 and 3
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The graph below shows the melting points of the elements in Period 3
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Noble Gases Simple atomic They have the lowest melting and boiling
(Eg: Ar) structure points because they exist as individual atoms
resulting in very weak London forces between
atoms
•
CHECKPOINT 6
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