Intro 1
Intro 1
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Mendeleiev proposed that if the atomic weight placed an
element in a wrong group, the atomic weight should be wrong.
Having this statement in mind, he predicted the physical
properties of three unknown elements. Due to the accuracy on
his predictions, his periodic table of elements was accepted by
the scientific community.
In 1913 Henry Moseley (1887 - 1915) determined the
atomic number of the elements by means of X-ray. He sorted
the elements according their atomic number.
Periodic Table of Elements
NOBLE
3 4 5 6 7 9 11 12
IIIB IVB VB VIB VIIB VIIIB IB IIB
GASES
M E T A L S
SEMIMETALS
Electronic Structure and Bonding
Acids and Bases
DNA
Medicines
•Active Pharmaceutical Ingredients
•Excipients
Ibuprofen
Metronidazole
Aspirin (antibiotic)
Materials
Capsaicin
Limonene
Fuels Essential oils
Methylene blue
Pigments
Organic Chemistry
• Organic compounds are compounds containing carbon
• Carbon neither readily gives up nor readily accepts electrons
Lewis structures
Formal charge =
number of valence electrons –
(number of lone pair electrons +1/2 number of bonding electrons)
Formal charge =
Group in the periodic table – (number of not shared electrons
+1/2 number shared electrons)
Important Bond Numbers
one bond H F Cl Br I
two bonds O
three bonds N
four bonds C
Intramolecular Forces
Vanderwaal´s forces
1S1 1S1
The molecular orbital model: bonding in H2
2p
px py pz px py pz 2sp3
Energy
sp3 hybrid state
2s of carbon
Ground electronic Higher energy
state of carbon electronic state
of carbon
The orbitals used in bond formation determine the bond angles
2p 2p
px py pz px py pz
Energy 2sp2
2p 2p
px py pz px py pz
Energy 2sp
2s sp hybrid state
of carbon
Ground electronic Higher energy
state of carbon electronic state
of carbon
• A triple bond consists of one s bond and two p bonds
• Bond angle of the sp carbon: 180°
Bonding in the Methyl Cation
Bonding in the Methyl Radical
Bonding in the Methyl Anion
Bonding in Water
Bonding in Ammonia and in the Ammonium Ion
Bonding in Hydrogen Halides
Summary
The vector sum of the magnitude and the direction of the individual
bond dipole determines the overall dipole moment of a molecule
Brønsted–Lowry Acids and Bases
H2O + HA H3O+ + A-
[H3O+][A-]
Ka =
[H2O][HA]
pKa = -log Ka
pH log
HA
pK a
A
• A compound will exist primarily in its acidic form at a pH < its pKa
•A compound will exist primarily in its basic form at a pH > its pKa
O
CH3COH CH3CH2OH
pKa = 4.76 pKa = 15.9
acetic acid ethanol
O O
CH3CO- CH3CO-
Lewis Acids and Bases
• Lewis acid: non-proton-donating acid; will accept two electrons
Delocalized electrons:
Neither belong to a single atom nor are
confined to a bond between two atoms, but are
shared by three or more atoms.
6.1 Delocalized Electrons: Structure of
Benzene
The Lewis representation of benzene suggests that we
deal with a six-membered ring of carbon atoms that
are held together by alternating single and double
bonds.
H
H C: 6 • 4 = 24 valence electrons
H H: 6 • 1 = 6 valence electrons
----------------------------------------
Total = 30 electrons
H H = 15 bonds
H
Benzene
This implies that we should observe alternating
short (1.33 Å) and long (1.54 Å) bond lengths.
H H X H H H
H B H X
6.2 The Bonding in Benzene
Kekulé Structure
Skeletal Structure
Three-dimensional
model
PROBLEM. Expand the following condensed formulas so as to show
all the bonds and unshared electron pairs.
(a) HOCH2CH2NH2 (d) CH3CHCl2
(b) (CH3)3CH (e) CH3NHCH2CH3
(c) ClCH2CH2Cl (f) (CH3)2CHCH=O
Alkynes R-CΞC-R
Alcohols ROH
Amine RNH2
Epoxide
Functional Groups in some important Classes of Organic Compounds
Class Generalized Representative example
abbreviation
Ether ROR
Nitrile R-CN
Nitrocompounds RNO2
Thiol RSH
Ketone R-CO-R
Functional Groups that Contain the Carboxyl Group
Class Generalized Representative example
abbreviation
Carboxylic acid RCO2H
Ester RCO2R
Acid anhydride
Amide RCONH2
Nomenclature of organic compounds
Prefix-Parent-Suffix
Alkyl groups are named by replacing the -ane ending of the parent
alkane with an –yl ending
The prefixes sec (for secondary) and tert (for tertiary) used
refer to the degree of alkyl substitution at the branching
carbon atom
Butyl group Butyl alcohol
Primary carbon
(Bonded to one carbon)
Secondary carbon
(Bonded to two carbons)
Tertiary carbon
(Bonded to three carbons)
tert-Butyl group tert-Butyl alcohol
Prefix-Parent-Suffix
Step 2. Number the chain so that the substituent gets the lowest
possible number
1 2 3 4 5 1 2 3 4 5 6 7 8
CH3
CH3CHCH2CH2CH3 CH3CH2CH2CHCH2CH2CH2CH3
CHCH3 CH3CHCH2CH2CH3
CH3
CH3
2-methylpentane common name: isohexane
4-isopropyloctane systematic name: 2-methylpentane
Step 3. Number the substituents to yield the lowest possible
number in the number of the compound
CH3CH2CHCH2CHCH2CH2CH3
CH3 CH2CH3 5-ehtyl-3-methyloctane
not
4-ethyl-6-methyloctane
because 3<4
CHCH3 CH2CHCH3
CH3 CH3
4-isopropyloctane 5-isobutyldecane
or or
4-(1-methylethyl)octane 5-(2-methylpropyl)decane
Problem. Phytane is a naturally occurring alkane produced
by the alga Spirogyra and is a constituent of petroleum. The
IUPAC name for phytane is 2,6,10,14-
tetramethylhexadecane. Write a structural formula for
phytane.
Problem. Give an acceptable IUPAC name for each of the
following alkanes:
4-ethyl-2-methylhexane.
8-ethyl-4-isopropyl-2,6-dimethyldecane
When writing an alkane name, the prefix iso is considered part of
the alkyl-group name for alphabetizing purposes, but the prefixes
(sec- tert-) are not
Cyclobutane Cycloheptane
Methylcyclopentane Cyclopropylbutane
Step 3. Number the substituents. For alkyl and halo-
substituted cycloalkanes, choose a point of attachment as C1
and number the substituents on the ring so that the second
substituent has a low number as possible. If ambiguity still
exists, number so that the third or four substituent has a low
number as possible, until a point of difference is found.
1,3-Dimethylcyclohexane
2-Ethyl-1,4-dimethylcycloheptane
When two or more different alkyl groups that could potentially
receive the same numbers are present, number them by
alphabetical priority
NOT
1-Ethyl-2-methylcyclopentane 2-ethyl-1-methylcyclopentane
When two or more different cyclic groups are present, the one
with more carbon atoms has the priority
(2-Cyclobutylethyl)cyclopentane
The hydroxyl group has priority over the alkyl group. The suffix
used in this case is ol
2-Methylcyclohexanol
3-Ethyl-4-methylcyclopentanol
PROBLEM. Write a structural formula for each of the following compounds:
(a) 6-Isopropyl-2,3-dimethylnonane (e) Cyclobutylcyclopentane
(b) 4-tert-Butyl-3-methylheptane (f ) (2,2-Dimethylpropyl)cyclohexane
(c) 4-Isobutyl-1,1-dimethylcyclohexane (g) Pentacosane
(d) sec-Butylcycloheptane (h) 10-(1-methylpentyl)pentacosane
(a) 6-Isopropyl-2,3-dimethylnonane
(b) 4-tert-Butyl-3-methylheptane
(c) 4-Isobutyl-1,1-dimethylcyclohexane
CH3(CH2)23CH3.
(h) 10-(1-methylpentyl)pentacosane
(e) Cyclobutylcyclopentane
(f ) (2,2-Dimethylpropyl)cyclohexane
Bicyclic alkanes
We name compounds containing 2 fused or bridged rings as
bicyclo alkanes and we use the name of the alkane
corresponding to the total number of carbon atoms as the
base name. The carbon atoms common to both the rings are
called bridgeheads, and each bond, or chain of atoms
connecting the bridgehead atoms, is called a bridge.
* Bridgehead
* One carbon bridge
Five carbon bridge
*
Bridge
One carbon bridge
*
Two carbon bridge Two carbon bridge
*
In between the words bicyclo and alkane we interpose in the
name an expression in the square brackets that denotes the
number of carbon atoms in each bridge (in descending order).
Bicyclo[4.3.0]nonane Bicyclo[4.3.3]dodecane
If substitutions are present, we number the bridged ring
system beginning at one bridgehead, proceeding first along
the longest bridge to the other bridgehead, then along the
next longest bridge back to the first bridgehead. The shortest
bridge is numbered last. If ambiguity exists, number so that
the substituents have a low number as possible
2-Methylbicyclo[2.2.1]heptane
2-Ethyl-4,6,8-trimethylbicyclo[3.2.2]nonane
Spirocyclic alkanes
We name compounds in which two rings share one common
atom (spirocenter) as spirocyclic alkanes
The root name is based on the number of C atoms in the ring
structure
The prefix spiro[x.y] is added. x and y indicate the size of the
rings excluding the spirocenter
The number of atoms indicated in square brackets is listed
smallest first
* Spirocenter
1-Methylspiro[2.5]octane
6-Methylspiro[3.5]nonane
Nomenclature of Alkyl Halides
CH3CHI CH3CH2CHBr
CH3Cl CH3CH2F
CH3 CH3
chloromethane fluoroethane
2-iodopropane 2-bromobutane
CH3CH2CHCH2CH2CH2CH3 CH3CH2CHCH2CH2CH2Cl
Br CH3
2-bromo-5-methylheptane 1-chloro-5,5-dimethylhexane
Br
CH2CH3 Cl
CH3
1-ethyl-2-iodocyclopentane 4-bromo-2-chloro-1-methylcyclohexane
Different Kinds of Alkyl Halides
Nomenclature of Ethers
CH3
CH3CHOCHCH2CH3
CH3
As substituents:
CH3
1 2 3 4 5 4 3 2 1 3 2 1
CH3CHCH2CH3 CH3CH2CH2CHCH2OH CH3CH2CH2CH2OCH2CH2CH2OH
OH 3-butoxy-1-propanol
CH2CH3
or
2-butanol 2-ethyl-1-pentanol
or 3-butoxypropan-1-ol
butan-2-ol or
2-ethylpentan-1-ol
2. The functional group suffix should get the lowest number
CH3
1 2 3 4 3 2 1 5 4 3 2 1
HOCH2CH2CH2Br ClCH2CH2CHCH3 CH3CCH2CHCH3
3-bromo-1-propanol OH CH3 OH
4-chloro-2-butanol 4,4-dimethyl-2-pentanol
CH3CHCHCH2CH3 CH3CH2CH2CHCH2CHCH3
Cl OH OH CH3
2-chloro-3-pentanol 2-methyl-4-heptanol OH
not not
6-methyl-4-heptanol 3-methylcyclohexanol
4-chloro-3-pentanol not
5-methylcyclohexanol
4. If there is more than one substituent, the substituents are cited
in alphabetical order
CH2CH3 CH2CH3
CH3CHCH2CHCH2CHCH3
Br OH H 3C OH
6-bromo-4-ethyl-2-heptanol 2-ethyl-5-methylcyclohexanol
HO
CH3
CH3
3,4-dimethylcyclopentanol
Nomenclature of Amines
1 2 3 4 5 6 3 2 1
4 3 2 1
CH3CH2CHCHCH2CH3 CH3CH2CH2NCH2CH3
CH3CH2CH2CH2NH2
NHCH2CH3 CH3
1-butanamine
or N-ethyl-N-methyl-1-propanamine
butan-1-amine N-ethyl-3-hexamine or
or N-ethyl-N-methylpropan-1-amine
N-ethylhexan-3-amine
Cl NHCH2CH3 N
H3C CH3
3-chloro-N-methyl-1-butanamine N-ethyl-5-methyl-3-hexanamine
4-bromo-N,N-dimethyl-2-pentanamine
CH2CH3
NHCH2CH2CH3
2-ethyl-N-propylcyclohexanamine
Naming Quaternary Ammonium Salts
CH3
H3C N+ CH3
HO-
CH3
tetramethylammonium hydroxide