C19 Gene Technology
C19 Gene Technology
Chapter 19
Genetic Technology
Chapter Outline
Technology Function Application
1. Polymerase Chain Clone and amplify DNA Too many…
Reaction (PCR)
• Role of Taq polymerase
Gene Therapy
• Vectors (viruses, liposomes,
naked DNA)
• SCID, inherited eye disease, CF
• Social and ethical
considerations
Components needed:
1. Template DNA
2. Taq polymerase
• Heat-stable DNA pol from Thermus aquaticus bacteria
3. Buffer
• Contains KCl and MgCl2
4. 4 types of nucleotides (A, T, C, G)
5. 2 Primers
• Short sequence of ~20bp of
single-stranded RNA/DNA
• Complementary base pair to start
and end of target region for amplification
Updated on 12/8/21 by Beh SJ @behlogy
Polymerase Chain Reaction (PCR)
1. Denaturation (95⁰C)
• DNA strands separate / denature into 2
strands by heat
• Hydrogen bonds between DNA strands breaks
• Bases are exposed
• Produce template strands for copying
Role of primers:
• Bind to target region for amplification
• Acts as a starting point for for Taq polymerase to bind
→Taq polymerase only binds to double-stranded DNA
and add new nucleotides to an existing strand
• Reduce reannealing of separated strands
Disadvantages:
• Need to know the precise DNA sequence beforehand to design primers
• DNA amplification have to be in shorter fragments than gene cloning in
bacteria (Genetic Technique 2)
Applications:
• DNA sequencing
→ Able to amplify small amount of DNA extracted for sequencing
(E.g. in fossils, blood sample)
• DNA profiling
→ Able to amplify small amounts of DNA extracted (E.g. at crime scene)
• Recombinant DNA Technology
→ Amplify DNA/gene needed for insertion into plasmid
• Genetic screening
→ To identify mutations/disease genes/DNA from pathogens
→ Use primers complementary to target gene
→ To identify and amplify target gene in specific
→ Gel electrophoresis used to isolate gene
Updated on 12/8/21 by Beh SJ @behlogy
Genetic Technology 2
RECOMBINANT DNA TECHNOLOGY /
GENE CLONING
Function: to make many copies of one gene / protein
Updated on 12/8/21 by Beh SJ @behlogy
Chapter Outline
Technology Function Application
2. Recombinant DNA To make many copies of Large-scale production of human
technology / Gene Cloning a gene or protein proteins as drugs
E.g. insulin, factor VIII for haemophilia,
• Properties of plasmids adenosine deaminase for SCID
• Promoters
• Marker genes (e.g. Genetic engineering of
fluorescent genes / genes crop plants and livestock
coding for easily stained
substances) • GM salmon
• Role of restriction • Insect resistance
endonucleases, reverse E.g. Bt maize, Bt cotton
transcriptase and ligase • Herbicide resistance
E.g. maize, cotton, tobacco, oil
seed rape
6. Grow bacteria in
3. Recombine/join gene fermenters for
to plasmid DNA large-scale production
5. Identify modified /
transformed bacteria
4. Insert recombinant
plasmid into bacteria
Updated on 12/8/21 by Beh SJ @behlogy
E.g. Production of human insulin
1. Obtain mRNA for human insulin
• From β cells of islets of Langerhans of pancreas
• Reverse transcriptase to make cDNA
(single-stranded complementary DNA)
from mRNA
• DNA polymerase used to make
double-stranded cDNA from ssDNA
• Final result: gene with no introns, shorter DNA
At ‘blunt ends’
• NO unpaired nucleotides
Updated on 12/8/21 by Beh SJ @behlogy
Plasmids
• Small, circular, double-stranded DNA
• Found in bacteria, but now usually artificially made in lab
• From jellyfish
• GFP emits bright green light
• When exposed to UV
New hosts:
• Have recombinant DNA (rDNA) = combination of DNA from two or more sources
• Expresses the new gene product / protein
But…
• Complicated process
• Expensive
• Not always successful
Benefits:
• High yield
• Consistent yield all-year round
• Conserve wild fish populations
• All modified salmon eggs are triploid and sterile
→ so impossible for them to breed among themselves and with other salmon
→ eliminate impact to wild population
Updated on 12/8/21 by Beh SJ @behlogy
Insect-Resistant Crops
Bt Crops
E.g. Bt cotton, Bt maize
• Bt cotton protected against boll weevils
Advantages:
• Can control/kill weeds
→ reduce competition
→ increase yield
• Less manual weeding needed
Updated on 12/8/21 by Beh SJ @behlogy
Herbicide-Resistant Crops
Glyphosate-resistant crops
Disadvantages:
Environmental
1. Intensive use of herbicides
→ High toxicity of more herbicide left after use
→ harmful to humans
• Cost of herbicide
→ cost of problems with pollution
→ cost of human health problems
→ loss due to contaminated crops of organic farms
https://www.youtube.com/watch?v=7TmcXYp8xu4
Gene Therapy
• Vectors (viruses, liposomes,
naked DNA)
• SCID, inherited eye disease, CF
• Social and ethical
considerations
Simulation = http://learn.genetics.utah.edu/content/labs/gel/
Updated on 12/8/21 by Beh SJ @behlogy
P5
Gel Electrophoresis of DNA
9. DNA pieces transferred to membrane / nylon / nitrocellulose / absorbent paper
• This is called Southern blotting
• Genetic screening
• Breast cancer (BRCA1, BRCA2)
• Genes for haemophilia, SCA, Huntington’s Disease and CF
• Gene Therapy
• Vectors (viruses, liposomes, naked DNA)
• SCID, inherited eye disease, CF
• Social and ethical considerations
7.
6. Pre-implantation
genetic diagnosis (PGD)
and preselection of
embryos
Procedure
1) Embryo biopsy = removing a cell from an embryo
• At 8-cell stage (day 4/5)
3) Gel electrophoresis
• Analyse DNA for faulty alleles to determine if embryo has genetic disease
• E.g. haemophilia, Huntington’s disease, cystic fibrosis
BUT…
**It’s controversial!**
Ethical concerns:
• Embryos might be destroyed if not pre-selected for implantation
• Could lead to selection based on gender or specific traits (“designer babies”)
• Contrary to beliefs / values
• Genetic disease may not develop
Aim:
Note: Gene editing in gametes or embryos is illegal
• To obtain functional normal polypeptide in humans! However, we can do it to somatic cells /
animal gametes and embryos to make GMOs
• Reduce symptoms of disorder
• Restore / enhance cellular functions
• Increase quality of life / survival
Problems:
• May cause side effects / allergies
• May be removed by immune system before it reaches target cells
• The virus may trigger an immune response which destroys the infected cells
• Most non-pathogenic viruses are not very good at getting into cells, so very
few cells receive the allele
Solution:
• Adeno-associated virus (AAV) does not
insert genes into host’s genome, not
passed on to daughter cells
• Lentiviruses can be modified to have
no uncontrolled viral replication
• Or use different vector!
Updated on 12/8/21 by Beh SJ @behlogy
Gene Therapy
Types of Vectors
2. Liposome vectors
• Small spheres of phospholipid
• Sprayed as an aerosol / Delivered using inhaler
• Liposome fuses with host cell surface membrane
• Trigger the immune response less than viruses
Problems:
• Not as effective in insertion as viruses
• Short term effect as host cells have short
lifespan
• Repeat treatments needed
Problems:
• Easily degraded
• Gene expression is very low
2. Introduce normal
1. Remove allele for ADA enzyme
T-lymphocytes using virus 3. Replace Problem:
T-lymphocytes Regular transfusions of
into body T cells are needed
(not a permanent cure)
Problem:
• Side effect = leukemia
• Due to random insertion of alleles
into cell’s genome
Solution:
• Use Adeno-associated viruses (AAV)
Gene therapy
• Insert normal allele for CFTR into lungs cells
→ Usually inhaled or sprayed
• Treats the cause rather than the symptoms
• No physiotherapy, antibiotics etc. needed
• Less time consuming than other treatments
• Effects are short-lived (few days)
and treatment needs repeating
• May have side-effects
Updated on 12/8/21 by Beh SJ @behlogy
Gene Therapy: Cystic Fibrosis
Vectors commonly used:
1) Liposomes
• Sprayed into nose
• Not long lasting & only a few cells received
the normal allele
2) Adenoviruses
• Normal harmless
• Used to infect respiratory cells
• Not all cells take up virus
• Side effects due to viral infection
OR
• It is a store / database
→ Collection of huge-quantities of data (“big data”) from all over the world
→ From DNA sequencing, microarrays, other techniques
→ Can search online for DNA and amino acid sequences
→ And use that to model / predict tertiary structure of protein
Components:
• Cas9 = enzymes that cuts DNA
• gRNA = guide RNA that be complementary to
target DNA
https://www.youtube.com/watch?v=4YKFw2KZA5o
Gene Therapy
• Vectors (viruses, liposomes,
naked DNA)
• SCID, inherited eye disease, CF
• Social and ethical
considerations