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OSC
OSC IB Revision Guides
Published by OSC Publishing,
Belsyre Court, 57 Woodstock Road
Oxford OX2 6HJ, UK
IB Biology HL
3 edition 2015
Copyright © 2015 Ashby Merson-Davies
978-1-907374-96-8
Ashby Merson-Davies has asserted his right under the Copyright, Design and
Patents Act 1988 to be identified as the Author of this work.
The material in this Revision Guide has been developed independently of the
International Baccalaureate Organisation.
How to order
Orders can be made via the website, e-mail, fax, phone or mail; contact
numbers and addresses below.
0sC
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Oxford OX2 6HJ, UK
T: +44 (0) 1865 512802
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E : [email protected]
W: osc-ib.com
Social responsibility
The OSC team are extremely proud that our profits benefit the McCall MacBain
Foundation, funding socially beneficial activities in health, education, and the
environment.
Welcome to the International Baccalaureate Higher Level Biology Revision Guide, 2016
edition.
The format is clear, colourful and simple to follow. Key points, facts and principles are listed
for easy learning, and diagrams are designed to make them easy to learn and reproduce in
an exam. Remember that a clear diagram provides an instant essay plan therefore helping
you to gain the extra mark for clarity and organisation.
Although the guide covers every aspect of the Higher Level course the layout does not follow
the sequence of the syllabus. Instead it has been reorganised to follow a more
developmental sequence as Chapters, starting with Mathematical Requirements, Molecular
Biology, Cell Biology, Cell Metabolism, Animal Physiology and Plant Physiology. These are
followed by Ecology, Genetics and finally Evolution and Biodiversity.
‘Pale blue boxes’ contain information that helps with understanding by providing additional
information. However you do not need to learn this.
B AR e |
- Other ‘coloured boxes’, such as these green and yellow ones,
contain information that you do need to know.
In addition to these there are a few larger ‘Revision’ boxes. Krebs Cycle
At the end of each chapter there are a number of Self-test Quizzes, containing ‘multiple
choice questions’. A suggested way to approach revision would be to work your way through
a chapter and test yourself with the Grey Box Questions. Then at a later date check how
much you have really learnt by trying the Self-test Quizzes.
Remember that when you answer multiple choice questions NEVER choose the first one that
sounds right. Examiners sometimes put in a trick answer as A or B. Always read ALL four
answers and try to think of the reason why the other three are wrong. The answers are in
Appendix 1 on pages 304-7.
In Chapter 8, Genetics, there is a ‘worked example’ for each section followed by a problem
for you to practise. The answer is at the end of the chapter. Then at the end of the chapter
there are a further 18 problems with the worked answers in Appendix 2 on pages 308-315.
The extended response exam questions start with a ‘Command Term’ and so it is essential
that you understand what these mean as you will be expected to apply them in your answers.
There are three levels of depth of treatment and are all given in Appendix 4 on page 317.
Appendix 5 on pages 318-322 has model answers for ‘Extended Response’ answers using
some of these command terms.
Appendix 6 on page 323 gives you some advice on what you should, and what you should
not take into your exams.
| am grateful to Pam Watson, Senior Biology Technician, and Georgina Kemp, Assistant
Biology Technician at Sevenoaks School, for their invaluable help with experiments and
microscope slide photographs, and also to Tony Stuart for his idea for the diagram of the
endosymbiotic theory. Thanks also to many people for generously allowing me to use their
images.
| would greatly value any feedback on this Revision Guide so that later editions can continue
to help students throughout the world. Please feel free to email me at Oxford Study Courses
— [email protected].
Ashby Merson-Davies
Contents
Plant Biology
O
Ecology
N
Genetics
00
=
{3
g
§ BIBLIOTEKA
2 . -
Chapter One
Mathematical Requirements
and Statistics
Many aspects of modern Biology require mathematical
manipulation of data. This chapter looks at some basic
maths along with graphs and statistics. Further
information on this is available in the Student Guide for
Internal Assessment in Biology.
Section
v
«Q
2
o
Size units in Biology
COOWOWWONNANUTITERDRDRDRDWWWWWNNNN
Relative sizes
Scale bars
Calculating magnification
Averages
Calculating the mean
Calculating the median
Calculating the mode
Calculating a percentage
Calculating a percentage change
Calculating a ratio
Variables
Standard deviation
Calculating standard deviation
Graphs
Bar charts
Histograms
Line graphs
Scattergraphs and correlation
Error bars
Hypotheses and significance testing
Statistics — chi-squared test
Chi-squared in genetics
Table of chi-squared values
-
Chi-squared in ecology
w =
-
Nomograms
Glossary
Answers to Grey Boxes Questions
Self-test Quiz
Answers to Self-Test Quiz
Length
= metre or m
= millimetre or mm = 107 of a metre
= micrometre or um = 10" of a metre or 10° of a millimetre
= nanometre or nm = 10°° of a metre or 10° of a millimetre or 10° of a micrometre
Concentration
= mol dm™
Relative sizes
Scale bars
A scale bar is a short line usually drawn on an electron micrograph that will allow you to calculate the
magnification of the photograph.
Calculating magnification
An alternative is that the image states the magnification. From this you can calculate the actual size.
Example:
The ‘cell’ on the right has been magnified 750x. @
Calculate its actual length.
Averages
fii.
The term average is often used when talking about
samples. There are three ways of measuring the average
— mean, median, and mode. Which one is used
depends on what you want to do with the data. 5. How would you write in S|
unit symbols cubic millimetres
per minute?
Calculating the mean
The mean is the sum of a set of values divided by the number of values.
The mathematical symbols used have been standardised.
Each measurement or value from a sample is given the symbol x.
The sum of all measurements is written as Yx. (X is the Greek letter sigma).
The number of values in the sample is n.
The mean of the sample is x-bar, x
x
The mean = sum of all samples X = Z_
sample size n
Calculating a percentage
Suppose there are 15 students in your class and 11 of these are girls.
Calculate the percentage of girls in the class. My calculat
number of girls 100 11 x100 =73% "@g'fi?
total number of students 15
Calculating a ratio
Key points
» Always bring one of the values to 1.
» This should be the first one stated in the ratio.
What is the ratio of girls to boys? What is the ratio of boys to girls?
11 girls =1 17 boys = 1.5 17 boys =1 11 girls = 0.6
11 11 17 17
The girl : boy ratiois 1: 1.5 The boy : girl ratio is 1: 0.6
Variables
There are four categories
» Independent — This is the one that is manipulated over a range of values.
» Dependent — This is the one that is measured.
» Controlled or Fixed — These are all the ones that are controlled at a fixed value.
» Uncontrolled — These are the ones that cannot be controlled.
Standard deviation
Key points
» Standard deviation is used to summarise the spread of values around the mean.
» A small value for standard deviation indicates that the data is close to the mean.
» Alarge value indicates that the data is spread out.
» If the standard deviation is greater than 33% of the mean then that is large.
» Inanormal distribution:
e 68% of the data falls within + or — one standard deviation of the mean,
e 95% falls within + or — two standard deviations.
» Standard deviation has the same units as the values.
If the SD value is
Example
small then the data is
close to the mean. Let us say the mean is 30 seconds and
frequency the standard deviation is 5 seconds.
If the SD value is
68% of the values will fall within the
large then the
time 0 35 seconds, and 95% of
data is spread out
e -will fall within the times of
from the mean.
20 to 40 seconds.
mean characteristic
Graphs
Graphical representation of data allows for an easy interpretation of a set of data and also
comparisons between sets of data. Bar charts, histograms and line graphs are the most common
types but in Papers 2 and 3 expect to see some more unusual ones.
Bar charts
Key points
» Each set of data is represented by a bar which can go vertically or horizontally.
» There must be a space between each bar or groups of bars.
Example 1
A student set up clear glass dishes containing sugar water on different coloured backgrounds and
counted the number of bees visiting each colour over a 2-hour period at midday.
[| .
30— - ] B -
Number of bees
o
10 -
5- 0 5 10 15 26 25 30
0- ‘ Number of bees
Red Yellow Blue | L
@BSun
B
Plant Species BShade
6. State the formula for calculating a 11. State the formula for calculating the
percentage change. mean of a set of values.
Example
A student collected the lengths of 24 leaves from each of two laurel bushes, one growing in a sunny
environment and one in shade, and organised the data into groups as shown in the table below.
Leaf lengths / mm
Line graphs
Key points
> Plotting dependent variables against independent variables.
> Plotting one variable against another to show a correlation.
> The relationship can be linear or non-linear.
5 co
Q. = £
2% 8 .c
3 B
9
g3
3D
£3
S
S 2 S
> o >0
Key points
» A scattergraph is a plot of two sets of variable data.
» The line may show a positive correlation, negative correlation or no correlation.
Variable A
Variable A
Variable B Variable B
A scattergraph showing
no correlation.
Variable A
°
e %%e%; O °e
o.. % .."....u' °
Variable B
Example 1: In many countries obesity has increased and so has the incidence of type Il diabetes,
i.e. a positive correlation implying obesity causes diabetes. Experimental data would need to be
collected to provide evidence that this is the case, and in fact this has proved to be correct.
Example 2: Shale gas production in the USA has increased dramatically in the last few years and
the population of honey bees has decreased dramatically — there is a negative correlation.
However it would be unreasonable to state that the fall in honey bee populations has been
caused by shale gas production.
Error bars
Key points
» Error bars show the variability or uncertainty in a set of data.
» This may take several forms such as simply the range of values, or standard deviation, or
standard error of the mean.
15 15
15
17
18
Mean 16.9
Standard deviation | 1.6
Here the error bar Here the error bar
shows the mean and shows the mean and
range from 15 to 19. +1 standard deviation.
For example data set A is without using a drug, the control. Data set B is using the drug.
The null hypothesis states that there is no link between the sets of data (observed and expected
values), whereas the alternative hypothesis states that there is.
The null hypothesis is used if you are not able to predict a result.
Significance
> In biology 5% is taken as the boundary, meaning that the probability of the difference happening
by chance is 5 times in 100.
> If the difference happens more than 5 times in 100, then it is due to chance.
> If the difference happens less than 5 times in 100, then it is probably due to a causal factor.
> Some statistics tests use tables of critical values and we compare the calculated result from a
statistics test with the critical value.
> If the calculated value is greater than the critical value then the difference is significant, i.e.
something has caused the difference.
Key points
> This test compares the relationship between an
observed set of data and an expected set of data.
> Each measurement must be independent from the others.
> The expected values must be greater than 5.
Chi-squared in genetics
Key points
> Two values are needed, the observed value and the expected value.
> The expected value is calculated using the Mendelian ratio expected for that cross.
> The formula to use is:
) (0-Ey Where > Degrees of freedom value is
yi= Z‘ 3 = sum of number of classes -1.
& O = the observed result
E = the expected result You do not need to know what degrees of
freedom means but you do need to know how
to calculate it.
* The totals row is not really necessary, but it helps prevent calculation errors. The totals of the Observed and Expected
columns must be the same, and the total of the O — E column must = zero.
Significance Level
Probability
Degrees of 20% 10% 5% 2% 1% Degrees of freedom =
freedom 0.2 0.1 0.05 0.02 0.01 Number of classes — 1 J
1 1.64 2.71 3.84 5.41 6.64 .
2 3.22 4.61 5.99 7.82 9.21
B 4.64 6.25 [ ] 9.84 11.34
4 5.99 7.78 9.49 11.67 13.28
5 7.29 9.24 11.07 13.39 15.09
4———— decreasing significance increasing ————p
Null hypothesis — there is no difference between the observed and expected ratios.
The 5% critical value on the table for 3 degrees of freedom is 7.82. Remembering that if the calculated
value is greater than the critical value then the difference is significant. Since the calculated figure of
0.81 is well below this then the observed difference from the 9:3:3:1 ratio is not significant. We have
proved our null hypothesis to be correct.
The formulae
To calculate the expected frequencies: To calculate degrees of freedom:
E = row total x column total (number of rows — 1) x (number of columns — 1)
grand total
Again you need to know
To calculate chi-squared: how to calculate degrees
of freedom.
e ) =Z( O-E)?
- ) Where
> =sum of
O = the observed result
E = the expected result
Example
The diamond leaf willow (Salix pulcha) and the Arctic willow (Salix arctica) are both found on rocky
outcrops in marshy ground in the Arctic tundra. A survey was carried out to see if there was an
association between these two species.
Significance Level
Probability
Degrees of 20% 10% 5% 2% 1% Degrees of freedom =
freedom 0.2 0.1 0.05 0.02 0.01 DY O =1
I 1.64 2.71 B 5.41 6.64 ( ) )
2 3.22 4.61 5.99 7.82 9.21
3 4.64 6.25 7.82 9.84 11.34
4 5.99 7.78 9.49 11.67 13.28
5 7.29 9.24 11.07 13.39 15.09
4——— decreasing significance increasing ————p
The null hypothesis, Hy, states that there is no association between the two Salix species.
The 5% critical value on the table for 1 degree of freedom is 3.84 Remembering that if the calculated
value is greater than the critical value then the difference is significant. The calculated figure of 2.09 is
smaller than this so the observed difference is not significant. We would accept the null hypothesis —
there is no association between the two species of Salix.
Example
Glossary
CAUSAL RELATIONSHIP A relationship between one event, X, and another, Y, in which X precedes and causes Y.
A relationship between two variables where a change in one causes a corresponding or proportional
CORRELATION change in the other values.
Used on a graph to show some measure of upper and lower values about the mean. Commonly this
ERROR BAR ; L
is standard deviation.
HYPOTHESIS A testable explanation of an observed event.
QUADRAT A measured square area which encloses a sampling area.
NORMAL DISTRIBUTION A bell shaped curve on a graph which is symmetrical each side of the mean.
NULL HYPOTHESIS Used in statistics, this states that there is no difference between the observed and predicted values.
In a statistics test the significance is whether one variable has an effect on another variable or if the
Si result is simply due to chance, In Biology the most common level of significance is 5%, i.e. if the
CNIFICANGE investigation was carried out 100 times then it is acceptable to have 5 of them where the effect was
due to chance.
A statistical measure of the spread of data about the mean of a set of values with a normal
STANDARD DEVIATION distribution.
68% of the values fall within +1 standard deviation of the mean,
95% of the values fall within +2 standard deviations of the mean.
22000pum
10°
R o
B0
10°
a. Measure the scale bar on the photograph in mm.
b. Convert these mm into the same units as the scale bar.
¢. Divide this number by the number on the scale bar.
mm? min”
o
Self-test Quiz
1. Which line in the table is correct?
Determine the magnification of these scale bars. The answers are at the bottom of the page.
oo o o i
a.2um b. 3um c. 1um
Magnification x0.15
The number of bacterial colonies on a petri dish on day 1 was 12 and on day 2 was 35.
Determine the percentage change in the number of colonies.
In a new forest plantation there are 376 planted forest trees and 85 self-seeded trees. Determine
the ratio of self-seeded to forest trees.
Use your calculator to calculate the mean and standard deviation of the following data.
Variable B
A student calculated the mean and standard deviation for a set of measurements of light
transmission through an extract of anthocyanin, a red plant pigment. She found the mean value
was 47% with a standard deviation of 13%. Was she right in stating that the standard deviation
was very small?
10. Standard deviation can be applied to a population with a normal distribution. In this case:
a. 68% of the population falls within + 1 standard deviation of the mean,
b. 95% of the population falls within + 1 standard deviation of the mean,
C. 68% of the population fits under the curve,
d. 68% of the population falls within + 2 standard deviation of the mean.
il Population A has a standard deviation of 2.7 units and population B has a standard deviation of
3.2 units. It can be deduced that:
a. Population A is smaller than population B.
b. The mean value of population B is greater than the mean value of population A.
c. Population B shows greater variation than population A.
d. The sampling procedure used for population A was different from that used for population B.
12. Bean plants were grown in temperature controlled rooms at two different temperatures and after
10 days the mean height of a sample of 50 from each room was measured. State the null
hypothesis and use the chi-squared test to determine if there is a significant difference in the two
means. (The table of chi-squared values is at the top of the page.)
of 2
e height
Mean plgnt, Obsgrved Exptécted O-E © _E)? o EE ~
mm
10°C 17
20°C 31
Totals
13. A breeding investigation was carried out with fruit flies. The expected ratio was 1:2:1 and the
observed numbers were 22:28:6. A chi-squared test was carried out and the result was 9.14.
What would be your conclusion, giving reasoning for your answer?
14a. On the island of Madeira water channels called levadas have been cut into the rock to provide water
for irrigation. Over time the cut rock surfaces have become covered by a growth of mosses and
liverworts. A student wanted to find out if there was an association between the mosses and liverworts
and so she collected the following data:
= Rock surfaces with both moss and liverwort — 120
= Rock surfaces with only moss — 46
= Rock surfaces with only liverwort — 29
= Rock surfaces with neither moss nor liverwort — 5
Draw a contingency table for this data.
14d. Calculate the chi-squared value and state whether the null hypothesis has been rejected or
accepted.
% saturation
T rr 1 r 1 v 1T 1 T T T 7 T T
0 1 2 3 4 5 6 7 8 9 10 1 12
Oxygen concentration / cm® !
Use the nomogram above to answer the following.
15a. If the temperature of the water is 15°C what is the % saturation when the oxygen concentrat
ion is
4cm*'?
15b. Determine the temperature change that causes a change in % saturation from
25 to 35 while the
oxygen concentration remains at 2cm® .
16. To measure growth rate an apple grower collected 1000 apples from trees in one
of his fields.
Assuming the sample had a normal distribution how many apples would be within two
standard
deviations of the mean?
a. 680
b. 950
c. 500
d. 475
17. The apple grower also wanted to compare the productivity of the same apple
variety growing in
two different fields. The table shows the data he collected:
‘ Mean number of apples per tree | Number of trees sampled | Standard deviation
Field A 350 1000 7
Field B 300 800 2.5
18. The number of peas in a sample of 10 pods was counted and the data shown
in the table.
(fi 2 3 4 5 6 7 8 9 10 | Mean|
5 6 6 7 7 7 7 8 8 9 7
Standard
1 2 3 4 5 6 7 8 9 10 | Mean deviation
44 52 71 45 69 72 83 68 75 81 66 141
What statistical percentage of the soil samples has between 52 and 80 eggs?
14.1%
oo
. 33%
. 68%
oo
. 95%
Section
Molecules
Hydrophilic and hydrophobic
Amphipathic
Carbon
Water
Comparing the thermal properties of water and methane
Water as a heat transporter
Water as a habitat
Water as a coolant
Water as a transporter in blood
Water as a transporter in plants
Carbohydrates
Monosaccharides and disaccharides
Polysaccharides
Cellulose
Starch
Lipids
Triglycerides
Fatty acid structure
Phospholipids
Steroids
Carbohydrates and lipids as energy stores
Scientific evidence for health risks of trans fats and saturated fatty aids
Evaluation of evidence for health claims about lipids
Methods used to obtain evidence
Condensation and hydrolysis
Basic principles
Condensation and hydrolysis in carbohydrates
Condensation and hydrolysis in lipids
Condensation and hydrolysis in amino acids
Body mass index (BMI)
Are you the right weight?
Molecular visualisation software
Glossary
Answers to Grey Box Questions
Self-test Quiz
Answers to Self-test Quiz
Amphipathic
An amphipathic molecule has part of it
hydrophilic and part hydrophobic.
Carbon
Key points
The dark grey ball is the carbon atom.
&
YVYVYYVY
The pale grey balls are other atoms that can be bonded on.
Carbon atoms can form four covalent bonds shown in black.
These bonds may be single as in methane CHy, or double as in carbon dioxide CO,
or even a mixture as in fatty acids — see page 24.
This allows carbon to form a large diversity of stable compounds.
v
Water
Key facts
Water is a dipolar molecule — it has negative and positive ends (poles).
VVVY
PLATE XXI.
Ap Adam Oak, Sedbury Park.
Hedgehog Oak, Sedbury Park.
August 4, 1885.
Many thanks to you for so kindly taking the trouble to
write about the injury to flesh possibly caused by the Warble
maggot; it would be of great service to know about it.
Doubtless your care of your cattle had a great deal to do
with their being free from injury—if we could but get even
the moderate amount of care applied which is needed to put
on a dressing when attack is seen it would make an
enormous difference.
The Dart or Turnip moth caterpillar is doing damage now—
and I do not believe there is a better remedy than scraping
out the grubs, but this is very troublesome till they are larger.
I see in a report on the “Cutworms,” as they call these
creatures in the U.S.A., that there is very much less injury
from them on ground which has been well salted. It is
thought that the salt drawn up into the plant makes it
distasteful to the caterpillars. I do not know how this may
be, but in a district of the Eastern Counties reported from
last year—where previously they had been quite set against
anything “artificial”—they were finding the turnips on salted
lands answered very much the best. I should much like to try
the effect of watering with salt and water, at a safe strength,
but from my own garden being so perpetually used for trial
ground it is getting free of regular pests. I have found
watering with soft soap and a little mineral oil (pp. 66-67,
eighth report, 1884), act well on these caterpillars. The
application appeared to paralyse the creature so that it could
not get away from the poisonous effects of the mixture,
which is a very important point.
I found this mixture act well on Cabbage green fly, and if
you should try it I shall be very much obliged for any
observation. The great point is to mix the ingredients at
boiling heat. I would try whether the strength noted was
safe for any special plant. I rather think it is for cabbage, but
certainly not for young leafage of roses. I shall be very glad
if I can be of any help in the matter.