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Bijay Kumar Behera Editor

Biotechnological
Tools in
Fisheries and
Aquatic Health
Management
Biotechnological Tools in Fisheries
and Aquatic Health Management
Bijay Kumar Behera
Editor

Biotechnological Tools
in Fisheries and Aquatic
Health Management
Editor
Bijay Kumar Behera
College of Fisheries, Rani Lakshmi Bai
Central Agricultural University
Jhansi, Uttar Pradesh, India

ISBN 978-981-99-2980-1 ISBN 978-981-99-2981-8 (eBook)

https://doi.org/10.1007/978-981-99-2981-8

# The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Singapore
Pte Ltd. 2023
This work is subject to copyright. All rights are solely and exclusively licensed by the Publisher, whether
the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of
illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and
transmission or information storage and retrieval, electronic adaptation, computer software, or by
similar or dissimilar methodology now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication
does not imply, even in the absence of a specific statement, that such names are exempt from the relevant
protective laws and regulations and therefore free for general use.
The publisher, the authors, and the editors are safe to assume that the advice and information in this
book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or
the editors give a warranty, expressed or implied, with respect to the material contained herein or for any
errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional
claims in published maps and institutional affiliations.

This Springer imprint is published by the registered company Springer Nature Singapore Pte Ltd.
The registered company address is: 152 Beach Road, #21-01/04 Gateway East, Singapore 189721,
Singapore
The Book is dedicated to my Parents and
Teachers.
Foreword

It is heartening that the College of Fisheries, Rani Lakshmi Bai Central Agricultural
University, Jhansi, Uttar Pradesh, India, is bringing out a book on Biotechnological
Tools in Fisheries and Aquatic Health Management. It is remarkable that different
branches of biotechnology have emerged from few disciplinary micro niches to well-
defined dynamic research areas, making substantial impact in the field of fisheries
science. The book covers emerging fields of genomics with a special focus on
various biotechnological tools applied in fisheries science and aquatic health man-
agement. The recent developments in genome editing using CRISPR-Cas9 technol-
ogy, molecular marker-assisted selective breeding in fish, metagenomics and
metatranscriptomics in aquatic environmental health management, soil biotechnol-
ogy, bioremediation of degraded ecosystems, bioinformatics, nanobiosensor tech-
nology applications in fish disease diagnosis and bio-electronics, nanotechnology,
role of immunostimulants in aquaculture, etc. have been included in the book. The
contributors of this book are from reputed academic and scientific institutions across
India. The editor has tried to capture such a wide and dynamic topic in a series of
captivating articles highlighting both existing and newly emerging technologies in
the field, protocols, methodologies and approaches, advantages, new school of
thoughts and potential future prospects with some frontier development of biotech-
nological research. I am confident that the publication shall be a reference book on
the present status, trends and approaches of different biotechnological tools applied
in fisheries and aquatic health management. This publication will be beneficial to
students and researchers in the field of biotechnology and related areas. I wish to
compliment the editor and the contributors for their hard work and painstaking
efforts.

Government of India, Department of Agricultural Himanshu Pathak

Research and Education (DARE) and
Indian Council of Agricultural Research (ICAR),
Ministry of Agriculture and Farmers Welfare
New Delhi, India

vii
Preface

The book Biotechnological Tools in Fisheries and Aquatic Health Management

mainly focuses on genetic improvement, environmental management and bioreme-
diation, biosecurity and disease control, fisheries management and biodiversity
conservation. Fish genetic improvement for better growth and disease resistance
using genome editing through CRISPR-Cas9 Technology is the need of the hour.
Similarly, marker-assisted selective breeding for fish genetic improvement using
molecular markers also has tremendous potential for fish production enhancement.
Disease outbreaks can have a significant impact on the growth and sustainability of
the aquaculture industry. Health management and disease control strategies for
aquaculture must take into account the unique features of the aquatic environment
and be designed to address these challenges. These biotechnologies can help to
improve the health and productivity of farmed fish and other aquatic species,
reducing the risk of disease outbreaks and ensuring sustainable growth of the
aquaculture industry. Immunoassay and DNA-based diagnostic methods are com-
monly used in many developing countries for the detection and diagnosis of signifi-
cant pathogens in aquaculture. Therefore, Nanobiosensor Technology has emerged
as a tool for early disease diagnosis. In this book, particular emphasis has been given
to recent developments in nanobiosensor technology. Many immunostimulants are
being used in aquaculture and fisheries for better fish health management. Aquacul-
ture has faced criticism for its potential negative impacts on the environment,
including water pollution, habitat destruction, and the spread of diseases and
non-native species to wild populations. In this Omics era, metagenomics studies
have much relevance for identifying Novel Antibiotic Resistance Genes (ARGs)
from the aquatic environment. The book Biotechnological Tools in Fisheries and
Aquatic Health Management contains 12 chapters and covers most of the topics
related to fish biotechnology and fish health management contributed by our distin-
guished scientists. The book’s objective is to draw the attention of our future
budding scientists, researchers and policymakers for exploring and developing
“Biotechnological Tools in Fisheries and Aquatic Health Management” in the
frontier area for societal benefit.

Jhansi, Uttar Pradesh, India Bijay Kumar Behera

ix
Acknowledgements

The preparation of this book has been guided by several reputed scientists in
Biotechnology and Fisheries Science. I am obliged to Dr. Himanshu Pathak, Secre-
tary (DARE) and Director General (ICAR), New Delhi, Dr. Joykrushna Jena,
Deputy Director General (Fisheries Science, ICAR), New Delhi, Dr. Ashok
Kumar Singh, Vice Chancellor, Rani Lakshmi Bai Central Agricultural University,
Jhansi, Padma Shri Dr. Subbanna Ayyappan, former Secretary (DARE) and Director
General (ICAR), New Delhi, Dr. Trilochan Mohapatra, former Secretary (DARE)
and Director General (ICAR), New Delhi, Prof. Shiva Dhar Singh, former Assistant
Director General (Inland Fisheries, ICAR) and Dr. Basanta Kumar Das, Director,
ICAR-Central Inland Fisheries Research Institute, Barrackpore, for providing their
valuable inputs and support for this book. I thank the anonymous reviewers for their
constructive comments that led to a substantial improvement in the quality of this
book. I acknowledge all authors who have significantly contributed to this book. I
also thank my wife Mrs. Jyotsna Dei and my son Shri Aman Jagannath for their
constant motivation for bringing this book to reality. This work would not have been
possible without support and enthusiasm from my colleagues, students and
researchers, Dr. Ajaya Kumar Rout, Dr. Chirasmita Nayak, Dr. Pranay Kumar
Parida, Dr. Vikash Kumar, Dr. Himanshu Sekhar Swain, Dr. Neelesh Kumar,
Shri Partha Sarathi Tripathy. Finally, I also thank my publisher and its publishing
editor, Springer Nature, for their continuous support and cooperation in the publica-
tion of this book.
I acknowledge Aakanksha Tyagi, Suraj Kumar and Muthuneela Muthukumar
from Springer Nature for their constant support and cooperation for the publication
of this book.

xi
Contents

1 Recent Developments in Biosensor Technology for Fisheries

and Aquaculture . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
Bijay Kumar Behera
2 Application of CRISPR-Cas9 Technology in Fish . . . . . . . . . . . . . . 15
Nilav Aich, Janmejay Parhi, Sagar Chandra Mandal,
and Lopamudra Sahoo
3 Nanotechnological Applications in Aquatic Health Management . . . 39
Dhruba Jyoti Sarkar, V. Santhana Kumar, Tanushree Banerjee,
and Suvra Roy
4 Transgenerational Phenotypic Plasticity in Fishes . . . . . . . . . . . . . . 59
Suvra Roy, Vikash Kumar, Bijay Kumar Behera, Dhruba Jyoti Sarkar,
and Basanta Kumar Das
5 Heat Shock Proteins in Fish Health Management . . . . . . . . . . . . . . 77
Vikash Kumar, Suvra Roy, Tanushree Banerjee, Bijay Kumar Behera,
and Basanta Kumar Das
6 Immunostimulants: Boon for Disease Management
in Aquaculture . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 93
Manoharmayum Shaya Devi, Asem Sanjit Singh,
Tanushree Banerjee, Abhijit Pakhira, and Praveen Maurye
7 Molecular Markers and Their Application in Fisheries and
Aquaculture . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 115
V. L. Ramya and Bijay Kumar Behera
8 Applications of Electronics in Fisheries and Aquaculture . . . . . . . . 151
Jyotsna Dei, Shirsak Mondal, Rajib Bandyopadhyay,
and Bijay Kumar Behera
9 Advanced Metatranscriptomic Approaches for Exploring the
Taxonomic and Functional Features Relevant to the Aquaculture
Industry . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 175
Sangita Dixit, Mahendra Gaur, and Enketeswara Subudhi

xiii
xiv Contents

10 Bioremediation and Its Application in Aquaculture . . . . . . . . . . . . 197

Souvik Dhar, Shukla Devnath, Vikash Kumar, Suvra Roy,
Ajaya Kumar Rout, Arup Mistri, Satya Narayan Parida,
Kampan Bisai, Asim Kumar Jana, and Bijay Kumar Behera
11 Application of Probiotics in Aquaculture . . . . . . . . . . . . . . . . . . . . . 217
Himanshu Sekhar Swain, Barsha Baisakhi, Mitesh H. Ramteke,
Vikash Kumar, and Aurobinda Upadhyay
12 Identifying Novel Antibiotic Resistance Genes (ARGs):
Important Aspect of Metagenomic Research . . . . . . . . . . . . . . . . . . 231
Ajaya Kumar Rout, Ritwika Das, Nimai Charan Mahanandia,
Sujata Dey, Satya Narayan Parida, Moumita Mondal,
Soumya Prasad Panda, Rajkumar Jena, Bhaskar Behera,
and Bijay Kumar Behera
Editor and Contributors

About the Editor

Bijay Kumar Behera is the Dean, College of

Fisheries, Rani Lakshmi Bai Central Agricultural Uni-
versity, Jhansi, India. Dr. Behera has more than 20 years
of research experience in the field of fish biotechnology,
microbiology, bioinformatics and nanobiosensor tech-
nology. He has received Australian Government-
Endeavour Award, Japanese Government-Mombusho
MEXT Fellowship, Prof. Har Swarup Award, Krushak
Pratibha Award, Scientist of the Year Award, Dr. Hiralal
Choudhury Award, Best Scientist Award and Dr. M.-
S. Swaminathan Best Indian Fisheries Scientist Award.
He is also a Fellow of Zoological Society of India and
Inland Fisheries Society of India.

Contributors

Nilav Aich Department of Fish Genetics and Reproduction, College of Fisheries,

Central Agricultural University, Lembucherra, Tripura, India
Barsha Baisakhi ICAR-Central Inland Fisheries Research Institute, Kolkata, West
Bengal, India
Rajib Bandyopadhyay Department of Instrumentation and Electronics Engineer-
ing, Jadavpur University, Kolkata, India
Tanushree Banerjee Aquatic Environmental Biotechnology and Nanotechnology
Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal,
India
Bhaskar Behera Department of Biosciences and Biotechnology, Fakir Mohan
University, Balasore, Odisha, India

xv
xvi Editor and Contributors

Bijay Kumar Behera College of Fisheries, Rani Lakshmi Bai Central Agricultural
University, Jhansi, Uttar Pradesh, India
Kampan Bisai Aquatic Environmental Biotechnology and Nanotechnology Divi-
sion, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal, India
Basanta Kumar Das ICAR-Central Inland Fisheries Research Institute, Kolkata,
West Bengal, India
Ritwika Das Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural
Statistics Research Institute, Library Avenue, PUSA, New Delhi, India
Jyotsna Dei Aquatic Environmental Biotechnology and Nanotechnology Division,
ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal, India
Manoharmayum Shaya Devi Aquatic Environmental Biotechnology and Nano-
technology Division, ICAR-Central Inland Fisheries Research Institute, Kolkata,
West Bengal, India
Shukla Devnath Aquatic Environmental Biotechnology and Nanotechnology
Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal,
India
Sujata Dey Aquatic Environmental Biotechnology and Nanotechnology Division,
ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal, India
Souvik Dhar Department of Zoology, The University of Burdwan, Burdwan, West
Bengal, India
Sangita Dixit School of Pharmaceutical Sciences, Centre for Biotechnology,
Siksha ‘O’ Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India
Mahendra Gaur School of Pharmaceutical Sciences, Centre for Biotechnology,
Siksha ‘O’ Anusandhan (Deemed to be University), Bhubaneswar, India
Asim Kumar Jana Aquatic Environmental Biotechnology and Nanotechnology
Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal,
India
Rajkumar Jena Department of Biosciences and Biotechnology, Fakir Mohan
University, Balasore, Odisha, India
Vikash Kumar ICAR-Central Inland Fisheries Research Institute, Kolkata, West
Bengal, India
Nimai Charan Mahanandia Centre for Agricultural Bioinformatics, ICAR-Indian
Agricultural Statistics Research Institute, Library Avenue, PUSA, New Delhi, India
Sagar Chandra Mandal Department of Fish Genetics and Reproduction, College
of Fisheries, Central Agricultural University, Lembucherra, Tripura, India
Editor and Contributors xvii

Praveen Maurye Aquatic Environmental Biotechnology and Nanotechnology

Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal,
India
Arup Mistri Department of Zoology, The University of Burdwan, Burdwan, West
Bengal, India
Moumita Mondal Amity Institute of Biotechnology, Amity University, Kolkata,
India
Shirsak Mondal Aquatic Environmental Biotechnology and Nanotechnology
Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal,
India
Abhijit Pakhira Aquatic Environmental Biotechnology and Nanotechnology Divi-
sion, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal, India
Soumya Prasad Panda Aquatic Environmental Biotechnology and Nanotechnol-
ogy Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West
Bengal, India
Janmejay Parhi Department of Fish Genetics and Reproduction, College of
Fisheries, Central Agricultural University, Lembucherra, Tripura, India
Satya Narayan Parida Aquatic Environmental Biotechnology and Nanotechnol-
ogy Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West
Bengal, India
Mitesh H. Ramteke ICAR-Central Inland Fisheries Research Institute, Kolkata,
West Bengal, India
V. L. Ramya Regional Centre of ICAR-Central Inland Fisheries Research Institute,
Bangalore, India
Ajaya Kumar Rout Aquatic Environmental Biotechnology and Nanotechnology
Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal,
India
Suvra Roy ICAR-Central Inland Fisheries Research Institute, Kolkata, West
Bengal, India
Lopamudra Sahoo ICAR RC for NEH Region Tripura Centre, Lembucherra,
Tripura, India
V. Santhana Kumar Aquatic Environmental Biotechnology and Nanotechnology
Division, ICAR-Central Inland Fisheries Research Institute, Kolkata, West Bengal,
India
Dhruba Jyoti Sarkar ICAR-Central Inland Fisheries Research Institute, Kolkata,
West Bengal, India
xviii Editor and Contributors

Asem Sanjit Singh Department of Molecular Reproduction, Development and

Genetics, Indian Institute of Science, Bangalore, India
Enketeswara Subudhi School of Pharmaceutical Sciences, Centre for Biotechnol-
ogy, Siksha ‘O’ Anusandhan (Deemed to be University), Bhubaneswar, Odisha,
India
Himanshu Sekhar Swain ICAR-Central Inland Fisheries Research Institute,
Kolkata, West Bengal, India
Aurobinda Upadhyay ICAR-Central Inland Fisheries Research Institute, Kolkata,
West Bengal, India
Recent Developments in Biosensor
Technology for Fisheries and Aquaculture 1
Bijay Kumar Behera

Abstract

Aquaculture is the fastest growing sector among the agriculture and allied sectors.
However, fisheries and aquaculture face lots of challenges due to biotic (viral,
bacterial, fungal and parasitic) and abiotic stresses of various chemical pollutants
of organic and inorganic biotoxin which are negatively impacting the growth of
aquaculture. Therefore, it became imperative to detect microbes and endocrine-
disrupting chemicals (EDCs) in aquatic ecosystems rapidly to mitigate those
problems. The conventional techniques (molecular techniques for microbes and
high-end equipments like GC-MS (gas chromatography-mass spectrometry),
HPLC (high-performance liquid chromatography), ICP-MS (inductively coupled
plasma mass spectrometry), etc. for detection of microbes and chemical
contaminants are costly and need skilled manpower. The receptor molecules
like antibodies, enzymes, aptamers, etc. are very important for development of
suitable molecular recognition element (MRE) against a particular analyte for
biosensor development. Biosensor can help in detection of pathogenic bacteria
and EDCs in less time with low cost and point of use. This chapter highlights the
recent developments of biosensor technology which can be used in fisheries and
aquaculture.

Keywords

Biosensor · Aquaculture · Aptamer · Pathogens · Endocrine-disrupting chemical

B. K. Behera (✉)
College of Fisheries, Rani Lakshmi Bai Central Agricultural University, Jhansi, Uttar Pradesh,
India

# The Author(s), under exclusive license to Springer Nature Singapore Pte 1

Ltd. 2023
B. K. Behera (ed.), Biotechnological Tools in Fisheries and Aquatic Health
Management, https://doi.org/10.1007/978-981-99-2981-8_1
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