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Organic Chemistry
Demystified
DANIEL R. BLOCH
McGRAW-HILL
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DOI: 10.1036/0071459200
To Nan for her assistance, patience, and helpful comments.
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For more information about this title, click here
CONTENTS
Preface xvii
Acknowledgments xix
CHAPTER 1 Structure and Bonding 1
Atomic Structure 1
Atomic Number and Atomic Mass (Weight) 3
Electron Energy Levels 4
The Octet Rule 7
Valences 8
Lewis Structures 9
Orbital Shapes 15
Quantum Mechanics 15
Bond Formation 18
Valence Bond Theory 20
Molecular Orbitals 21
Bonding and Antibonding MOs 21
Bonding and 3-D Molecular Shape 23
Curved Arrows 30
Electronegativity and Bond Polarity 31
Dipole Moments 33
Formal Charges 34
Resonance Structures 36
Intermolecular Forces 37
Quiz 39
vii
viii CONTENTS
CHAPTER 5 Stereochemistry 99
Isomers 99
Chiral Compounds 100
Stereocenters 101
Chirality Centers 102
Enantiomers 105
Racemic Mixtures 109
CONTENTS ix
Bibliography 539
Index 541
PREFACE
xvii
Copyright © 2006 by The McGraw-Hill Companies, Inc. Click here for terms of use.
xviii PREFACE
As you read each chapter, take frequent breaks (you can munch on the extra
gum drops used to make models in Chapter 5). The book contains a lot of figures
and diagrams. Follow these as you read the text. It is often easier to understand
a reaction mechanism in a diagram than to describe it in words.
Yes, there is some memorization. New terms will appear that you probably
have never heard before. For a series of terms I recommend making a mnemonic
and I suggested a few. Reaction mechanisms are not as difficult as they may
appear. You can predict most reactions in that negative species will be attracted
to positive species (opposites attract). Atoms with electrons to share will be
attracted to species that want more electrons—it is just that simple.
There is a multiple-choice final exam at the end of the text. The final exam
has more general, but similar, questions than those in the quizzes. Answers are
given in the back of the book. If you are able to answer 80% of the final exam
questions correctly (the first time), you will have a good understanding of the
material.
I hope you will enjoy reading about organic chemistry as much as I have
enjoyed writing about it.
Daniel R. Bloch
ACKNOWLEDGMENTS
The author expresses his appreciation to Nan for her assistance, patience, and
helpful comments during the preparation of this book.
The following individuals were kind enough to review various chapters in
this book:
Vaughn Ausman, Marquette University
Kate Bichler, University of Wisconsin Center—Manitowoc
Peter Conigliaro (retired), S.C. Johnson
Sheldon Cramer (emeritus), Marquette University
Timothy Eckert, Carthage College
Sharbil Firson, Sigma-Aldrich
Kevin Glaeske, Wisconsin Lutheran College
Bruce Holman
Shashi Jasti, Sigma-Aldrich
Steven Levsen, Mount Mary College
Julie Lukesh, University of Wisconsin—Green Bay
Kevin Morris, Carthage College
Patt Nylen, University of Wisconsin—Milwaukee
Stephen Templin, Cardinal Stritch University
A special thanks to Priyanka Negi and Judy Bass who assisted with the
technical editing of this book.
xix
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Organic Chemistry
Demystified
xxi
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1
CHAPTER
Structure and
Bonding
Introduction
The study of organic chemistry involves the reactions and interactions of
molecules. Since molecules are composed of atoms, it is necessary to review
the structure of atoms and how they contribute to the properties of molecules.
Atomic Structure
Atoms are composed of a nucleus surrounded by electrons, as shown in Fig. 1-1.
The nucleus consists of positively charged protons and neutral neutrons. Al-
though the nucleus consists of other subatomic particles, the proton, neutron,
and electron are the only subatomic particles that will be discussed in this text.
Copyright © 2006 by The McGraw-Hill Companies, Inc. Click here for terms of use.
2 CHAPTER 1 Structure and Bonding
Nucleus contains
protons and neutrons and is
about 0.0001 angstrom in diameter
Electron cloud
1Å
diameter
MASSES OF ATOMS
The mass of an atom is concentrated in the nucleus. A proton and a neutron
each have a mass of about 1.66 × 10−24 g. An electron has a mass of 1/1800th
that of a proton. Since these are such very small numbers, it is more convenient
to give the mass of a proton and a neutron in atomic mass units (amu). One
amu is equal to 1.66 × 10−24 g. The mass of individual atoms is also given in
a.m.u. The mass of 1 mole of atoms (a mole is a specific number, approximately
6.022 × 1023 ) is the atomic mass, which we usually call the atomic weight, of
an element. The atomic weight is expressed in grams/mol.
ELECTRON CLOUDS
Structures of molecules are usually written as shown in Fig. 1-2. Structure 1-2a
implies that atoms are quite far apart, relative to their size. This is certainly true
for the nuclei, but not for the electron clouds. The distance between a hydrogen
nucleus and a carbon nucleus in a carbon-hydrogen bond is about 1.14 Å. The
CHAPTER 1 Structure and Bonding 3
H C H H C H
H H
1-2a 1-2b
ISOTOPES
The number of neutrons may vary for a particular element. About 99% of
carbon atoms have six neutrons, about 1% have seven neutrons, and a very small
percentage contain eight neutrons. Atoms with the same atomic number (and
thus the same number of protons) but different mass numbers (the sum of protons
and neutrons) are called isotopes. The average mass of carbon is 12.0107 g/mol,
the element’s atomic weight. Note that the atomic weights (we should really say
atomic masses, but organic chemists usually use the term weight) of elements
in the periodic table (Appendix A) are not whole numbers as they represent the
average of the isotopic composition. The number of electrons in a neutral atom,
one without a charge, equals the number of protons. Electrons also contribute
to an atom’s molecular weight, but an electron’s total weight is about 1/2000th
that of a proton and their weight contribution is usually ignored.
QUESTION 1-2
A sample consists of three atoms of chlorine: one has a mass of 35.0 amu and
two have masses of 36.0 amu. How many protons, neutrons, and electrons are
in each atom? What is the average mass of the sample?
ANSWER 1-2
The atom of 35.0 amu has 17 electrons, 17 protons, and 18 neutrons. The other
atoms have 17 electrons, 17 protons, and 19 neutrons. The average mass is
(1 × 35.0 + 2 × 36.0)/3 = 35.7 amu.
3d Subshells
3p
Increasing 3s
energy
2p
Shells
2s
1s
carbon, nitrogen, and oxygen atoms are shown in Fig. 1-4. Electrons prefer to
occupy the lowest energy levels available to them. This represents their most
stable state called their ground state.
AUFBAU PRINCIPLE
Figure 1-4 is a more concise method showing how electrons fill the subshells as
the atomic number of the element increases. Each additional electron goes into
the lowest energy subshell available to it. This is called the aufbau (building
up) principle. Figure 1-4 shows the electron lowest-energy configuration of six
common elements. Each s subshell consists of one orbital. Each p subshell
consists of three orbitals. Note the term orbital, not orbit, is used. An orbital is
defined in a following section.
Each orbital can hold a maximum of two electrons. When the orbitals in
a subshell are filled, electrons go into the next higher-energy subshell. Each
principle shell has only one s orbital: 1s, 2s, 3s, etc. Each principle shell of
Level 2 and higher has three p orbitals, px , p y , and pz . All p orbitals in the same
subshell (2px , 2p y , and 2pz ) are of equal energy. Orbitals of equal energy are
2p 2p 2p
2s 2s 2s
1s 1s 1s
Hydrogen, 1H Helium, 2He Carbon, 6C
2p 2p 2p
2s 2s 2s
1s 1s 1s
Nitrogen, 7N Oxygen, 8O Neon, 10Ne
HUND’S RULE
Consider the carbon atom with six electrons. The electron configuration is shown
in Fig. 1-4. Using the aufbau principle, the first two electrons go into the 1s
orbital. The next two electrons go into the next higher energy 2s orbital. Then
the last two electrons go into the higher energy 2p orbitals. The last two electrons
could go into one p orbital or each could go into two different p orbitals. For
degenerate (equal energy) orbitals, it is more energy efficient for electrons to
go into different degenerate orbitals until they must pair up (Hund’s rule).
Now consider oxygen with eight electrons. When seven electrons are added
by the aufbau principle, the electron configuration will be the same as shown for
nitrogen (see Fig. 1-4). The last electron added pairs with an electron already in
a 2p orbital. Their spins must be opposite (Pauli exclusion principle) as shown
in Fig. 1-4.
ELECTRON CONFIGURATIONS
A short-hand method for writing the electron configurations of atoms is shown
for oxygen as 1s2 2s2 2p4 . Verbally one would say one s two, two s two, two
p four. The prefix indicates the principle energy level (1, 2, 3, etc.), the letter
(s, p, d, or f) gives the type of orbital, and the exponent is the number of electrons
in that orbital.
CHAPTER 1 Structure and Bonding 7
QUESTION 1-3
Draw the short-hand electron configuration for the sodium atom.
ANSWER 1-3
The sodium atom has 11 electrons: 1s2 2s2 2p6 3s1 .
VALENCE ELECTRONS
The electrons in the outermost shell are called the valence electrons. Elements
in the first row (period) in the periodic table, hydrogen and helium, have only a
1s orbital. The maximum number of electrons these two elements can accom-
modate is 2. A 2-electron configuration will be called a duet. When hydrogen
has 2 valence electrons in its 1s orbital it will be called duet happy. Elements in
the second row (period) in the periodic table, from lithium to neon, can hold a
maximum of 10 electrons. The outermost shell, the valence shell, has a principle
quantum number of 2 and can hold a maximum of 8 electrons, 2s2 , 2p6 . When
the valence shell orbitals are filled, the atom will be called octet happy. The
number of valence electrons in the elements in the first three rows of the
periodic table is equal to their group number (see the periodic table in Appendix
A). Hydrogen in Group IA has 1 valence electron, carbon in Group IVB has
4 valence electrons, and fluorine in Group VIIB has 7 valence electrons. An
atom can gain valence electrons from, or loose electrons to, other atoms. Valence
electrons are important since they are involved in forming chemical bonds.
QUESTION 1-4
How many electrons does a nitrogen atom have? How many valence electrons
does it have?
ANSWER 1-4
It has seven electrons and five valence electrons.
outermost (valence) shell. An explanation for this special stability is beyond the
scope of this book.
There are some exceptions to the octet rule. Third row elements (such as
sulfur and phosphorus) can hold up to 18 electrons in their outermost valence
shell (3s, 3p, and 3d orbitals). Beryllium and boron atoms can have less than
8 electrons in their valence shells. An example of a boron compound will be
discussed in a following section.
Valences
The bonding capacity or the number of bonds to an atom is called its valence.
(It would be helpful to look at the periodic table in Appendix A as you read
this paragraph.) The valence of atoms in Groups IA to IVA is the same as
the group number. Lithium (Group IA) has a valence of one and will have a
single bond to another atom. Carbon (Group IVB) has a valence of four and
there will be four bonds to each carbon atom. Carbon is called tetravalent. The
valence of elements in Groups VB to VIIB is 3, 2, and 1 (or eight minus the
group number) respectively. Elements in Groups VB to VIIB can have multiple
positive valences, but those situations will not be discussed here.
QUESTION 1-5
What valence does oxygen have? What is the bonding capacity for oxygen?
What is the bonding capacity for boron?
ANSWER 1-5
Oxygen has a valence and bonding capacity of 2. Boron has a bonding capacity
of 3.
Atoms in the second row tend to gain or lose electrons to achieve the electron
structure of the nearest noble gas. They want to be duet or octet happy as are
the noble gases. Thus, lithium tends to lose one electron to achieve the helium
electron configuration. Fluorine tends to gain an electron to achieve the neon
electron configuration.
QUESTION 1-6
How many electrons must oxygen gain to become octet happy?
ANSWER 1-6
Oxygen will gain 2 electrons to have a full octet in its valence shell.
CHAPTER 1 Structure and Bonding 9
BOND FORMATION
Atoms form bonds by transferring or sharing electrons with other atoms. An
atom that loses an electron has a positive charge and is called a cation. If an
atom gains an electron, it has a negative charge and is called an anion. Atoms of
elements in Groups IA and IIA tend to transfer electrons to elements in Groups
VIB and VIIB. The resulting cation from Group IA or IIA forms an ionic bond
with the resulting anion from Group VIB or VIIB. Elements in Groups VIB and
VIIB tend to share electrons if they react with elements in Groups IVB to VIIB.
Sharing electrons result in covalent bonds.
Carbon, in Group IVB, tends to form bonds with many other elements. One
reason there are so many organic compounds is that carbon atoms can form
bonds with other carbon atoms, resulting in a large number of compounds.
Lewis Structures
Lewis structures are a convenient way of showing an atom’s valence electrons.
Dots are used to indicate the valence electrons. The inner electrons, the core
electrons, are not shown. Lewis structures for carbon, nitrogen, and fluorine
atoms are shown in Fig. 1-5.
• •• •
C• • N• • F
••
••
• •
••
H H Bonding electrons
H
•• ••
H C H or H C H H C O H
••
••
•• ••
H H
H Nonbonding electrons
1-6a 1-6b
Electron pair
•• movement ••
O O
••
••
••
•• •• •• ••
H O C O H H O C O H
•• •• •• ••
1-6c 1-6d
••
••
O
••
O
••
••
•• ••
•• ••
O N O
••
••
O N O
••
••
•• •• •• ••
1-6e 1-6f
NO3−
shown in Structure 1-6b. The five bonds use 10 electrons (2 electrons in each
bond). There are 4 valence electrons left to assign. Put these electrons on the
oxygen atom to make it octet happy. All atoms are now duet or octet happy. The
Lewis structure is shown as Structure 1-6b.
A key point: the total number of valence electrons for an atom in a compound
is the sum of all bonding and nonbonding electrons. Both electrons in a bond
are counted as valence electrons for each atom connected by that bond. In a
C H bond the two electrons are counted as valence electrons for H and for C.
Thus electrons in bonds are double counted as valence electrons.
ANSWER 1-7
H H O
••
••
•• •• •• •• ••
F I N
••
••
••
H C Cl O H C H C C O
••
H H
••
•• •• •• •• ••
H H
KEKULÉ STRUCTURES
Kekulé structures are similar to the Lewis structures but exclude the nonbonding
electrons. All bonds are shown as lines and not dot pairs.
CONDENSED STRUCTURES
Condensed structures are another way of drawing chemical structures. Follow
along in Fig. 1-7 as you read this paragraph. Structures 1-7a–c represent the
same compound written in different ways. The carbon atoms are usually (but
CH3CH2CH(CH3)CH2CH2CH3
1-7c
Substituent may be written in main chain
CH2
CH3CCH3 or CH3C(CH2)CH3
1-7d Group or atom bonded to the
O preceding atom with a double bond
CH3CCH3 or CH3C(O)CH3
1-7e
Enter on one side Astolfo, Duke of Muscovy, with his train; and, on
the other, the Princess Estrella, with hers.
Astolfo. My royal cousin, if so near in blood,
Till this auspicious meeting scarcely known,
Till all that beauty promised in the bud
Is now to its consummate blossom blown,
Well met at last; and may—
Estrella. Enough, my Lord,
Of compliment devised for you by some
Court tailor, and, believe me, still too short
To cover the designful heart below.
Ast. Nay, but indeed, fair cousin—
Est. Ay, let Deed
Measure your words, indeed your flowers of speech
Ill with your iron equipage atone;
Irony indeed, and wordy compliment.
Ast. Indeed, indeed, you wrong me, royal cousin,
And fair as royal, misinterpreting
What, even for the end you think I aim at,
If false to you, were fatal to myself.
Est. Why, what else means the glittering steel, my Lord,
That bristles in the rear of these fine words?
What can it mean, but, failing to cajole,
To fight or force me from my just pretension?
Ast. Nay, might I not ask ev’n the same of you,
The nodding helmets of whose men at arms
Out-crest the plumage of your lady court?
Est. But to defend what yours would force from me.
Ast. Might not I, lady, say the same of mine?
But not to come to battle, ev’n of words,
With a fair lady, and my kinswoman;
And as averse to stand before your face,
Defenceless, and condemn’d in your disgrace,
Till the good king be here to clear it all—
Will h f t h ?
Will you vouchsafe to hear me?
Est. As you will.
Ast. You know that, when about to leave this world,
Our royal grandsire, King Alfonso, left
Three children; one a son, Basilio,
Who wears—long may he wear!—the crown of Poland;
And daughters twain: of whom the elder was
Your mother, Clorileña, now some while
Exalted to a more than mortal throne;
And Recisunda, mine, the younger sister,
Who, married to the Prince of Muscovy,
Gave me the light which may she live to see
Herself for many, many years to come.
Meanwhile, good King Basilio, as you know,
Deep in abstruser studies than this world,
And busier with the stars than lady’s eyes,
Has never by a second marriage yet
Replaced, as Poland ask’d of him, the heir
An early marriage brought and took away;
His young queen dying with the son she bore him:
And in such alienation grown so old
As leaves no other hope of heir to Poland
Than his two sisters’ children; you, fair cousin,
And me; for whom the Commons of the realm
Divide themselves into two several factions;
Whether for you, the elder sister’s child;
Or me, born of the younger, but, they say,
My natural prerogative of man
Outweighing your priority of birth.
Which discord growing loud and dangerous,
Our uncle, King Basilio, doubly sage
In prophesying and providing for
The future, as to deal with it when come,
Bids us here meet to-day in solemn council
Our several pretensions to compose.
And but the martial out burst that proclaims
And, but the martial out-burst that proclaims
His coming, makes all further parley vain,
Unless my bosom, by which only wise
I prophesy, now wrongly prophesies,
By such a happy compact as I dare
But glance at till the Royal Sage declare.
Trumpets, etc. Enter King Basilio with his Council.