CNN MODEL

Importing Necessary Libraries

In [20]:

import tensorflow as tf
from tensorflow.keras import Sequential
from tensorflow.keras.layers import Conv1D,
MaxPool1D,Flatten,Dense,Dropout,BatchNormalization
from tensorflow.keras.optimizers import Adam

In [21]:

import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sns

In [22]:

from sklearn import datasets,metrics

from sklearn.model_selection import train_test_split
from sklearn.preprocessing import StandardScaler

Loading the Built-in Sklearn Breast Cancer Dataset

In [23]:

cancerData = datasets.load_breast_cancer()

In [24]:
X = pd.DataFrame(data = cancerData.data,
columns=cancerData.feature_names )
X.head()

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5 rows × 30 columns

In [25]:

y = cancerData.target

In [26]:

X.shape

Out[26]:

(569, 30)

Splitting into Train and Test datasets

In [27]:
X_train,X_test,y_train,y_test=
train_test_split(X,y,test_size=0.1,stratify=y)

In [28]:

X_train.shape

Out[28]:

(512, 30)

In [29]:

y_test.shape

Out[29]:

(57,)

Applying StandardScaler()
In [30]:

scaler = StandardScaler()

In [31]:

X_train = scaler.fit_transform(X_train)
X_test = scaler.transform(X_test)

Reshaping the dataset to 3-D to pass it through CNN

 In [32]:

X_train = X_train.reshape(512,30,1)
X_test = X_test.reshape(57,30,1)

Preparing the Model

In [33]:

model = Sequential()
model.add(Conv1D(filters=16,kernel_size=2,activation='relu',input_shape=(3
0,1)))
model.add(BatchNormalization())
model.add(Dropout(0.2))

model.add(Conv1D(32,2,activation='relu'))
model.add(BatchNormalization())
model.add(Dropout(0.2))

model.add(Flatten())
model.add(Dense(32,activation='relu'))
model.add(Dropout(0.2))

model.add(Dense(1,activation='sigmoid'))

In [34]:

model.summary()

Model: "sequential_1"
_________________________________________________________________
Layer (type) Output Shape Param #
=================================================================
conv1d_2 (Conv1D) (None, 29, 16) 48
_________________________________________________________________
batch_normalization_2 (Batch (None, 29, 16) 64
_________________________________________________________________
dropout_3 (Dropout) (None, 29, 16) 0
_________________________________________________________________
conv1d_3 (Conv1D) (None, 28, 32) 1056
_________________________________________________________________
batch_normalization_3 (Batch (None, 28, 32) 128
_________________________________________________________________
dropout_4 (Dropout) (None, 28, 32) 0
_________________________________________________________________
flatten_1 (Flatten) (None, 896) 0
_________________________________________________________________
dense_2 (Dense) (None, 32) 28704
_________________________________________________________________
dropout_5 (Dropout) (None, 32) 0
_________________________________________________________________
dense_3 (Dense) (None, 1) 33
=================================================================
Total params: 30,033
Trainable params: 29,937
Non-trainable params: 96
_________________________________________________________________

In [35]:

model.compile(optimizer=Adam(learning_rate=0.0001),loss='binary_crossentro
py',metrics=['accuracy'])

In [36]:

history =
model.fit(X_train,y_train,epochs=35,verbose=1,validation_data=(X_test,y_te
st))

Train on 512 samples, validate on 57 samples

Epoch 1/35
512/512 [==============================] - 1s 2ms/sample - loss: 0.9711 -
accuracy: 0.5352 - val_loss: 0.6497 - val_accuracy: 0.7193
Epoch 2/35
512/512 [==============================] - 0s 159us/sample - loss: 0.6452
- accuracy: 0.6797 - val_loss: 0.5717 - val_accuracy: 0.8421
Epoch 3/35
512/512 [==============================] - 0s 150us/sample - loss: 0.4521
- accuracy: 0.7852 - val_loss: 0.5118 - val_accuracy: 0.8246
Epoch 4/35
512/512 [==============================] - 0s 156us/sample - loss: 0.3574
- accuracy: 0.8438 - val_loss: 0.4674 - val_accuracy: 0.8070
Epoch 5/35
512/512 [==============================] - 0s 147us/sample - loss: 0.2879
- accuracy: 0.8770 - val_loss: 0.4324 - val_accuracy: 0.7895
Epoch 6/35
512/512 [==============================] - 0s 147us/sample - loss: 0.2909
- accuracy: 0.8770 - val_loss: 0.4050 - val_accuracy: 0.7719
Epoch 7/35
512/512 [==============================] - 0s 155us/sample - loss: 0.2365
- accuracy: 0.8984 - val_loss: 0.3823 - val_accuracy: 0.7719
Epoch 8/35
512/512 [==============================] - 0s 152us/sample - loss: 0.2099
- accuracy: 0.9062 - val_loss: 0.3623 - val_accuracy: 0.7895
Epoch 9/35
512/512 [==============================] - 0s 152us/sample - loss: 0.2105
- accuracy: 0.9043 - val_loss: 0.3465 - val_accuracy: 0.7895
Epoch 10/35
512/512 [==============================] - 0s 151us/sample - loss: 0.1847
- accuracy: 0.9297 - val_loss: 0.3308 - val_accuracy: 0.8070
Epoch 11/35
512/512 [==============================] - 0s 151us/sample - loss: 0.1689
- accuracy: 0.9336 - val_loss: 0.3141 - val_accuracy: 0.8246
Epoch 12/35
512/512 [==============================] - 0s 160us/sample - loss: 0.1684
- accuracy: 0.9336 - val_loss: 0.3000 - val_accuracy: 0.8246
Epoch 13/35
512/512 [==============================] - 0s 149us/sample - loss: 0.1634
- accuracy: 0.9395 - val_loss: 0.2873 - val_accuracy: 0.8246
Epoch 14/35
512/512 [==============================] - 0s 145us/sample - loss: 0.1443
- accuracy: 0.9414 - val_loss: 0.2708 - val_accuracy: 0.8421
Epoch 15/35
512/512 [==============================] - 0s 149us/sample - loss: 0.1383
- accuracy: 0.9414 - val_loss: 0.2512 - val_accuracy: 0.8421
Epoch 16/35
512/512 [==============================] - 0s 155us/sample - loss: 0.1584
- accuracy: 0.9434 - val_loss: 0.2300 - val_accuracy: 0.8772
Epoch 17/35
512/512 [==============================] - 0s 147us/sample - loss: 0.1269
- accuracy: 0.9531 - val_loss: 0.2153 - val_accuracy: 0.8772
Epoch 18/35
512/512 [==============================] - 0s 151us/sample - loss: 0.1179
- accuracy: 0.9629 - val_loss: 0.2010 - val_accuracy: 0.8772
Epoch 19/35
512/512 [==============================] - 0s 156us/sample - loss: 0.1173
- accuracy: 0.9629 - val_loss: 0.1852 - val_accuracy: 0.8947
Epoch 20/35
512/512 [==============================] - 0s 152us/sample - loss: 0.1160
- accuracy: 0.9590 - val_loss: 0.1707 - val_accuracy: 0.9123
Epoch 21/35
512/512 [==============================] - 0s 161us/sample - loss: 0.1264
- accuracy: 0.9629 - val_loss: 0.1584 - val_accuracy: 0.9474
Epoch 22/35
512/512 [==============================] - 0s 164us/sample - loss: 0.1054
- accuracy: 0.9629 - val_loss: 0.1440 - val_accuracy: 0.9474
Epoch 23/35
512/512 [==============================] - 0s 155us/sample - loss: 0.1103
- accuracy: 0.9590 - val_loss: 0.1344 - val_accuracy: 0.9474
Epoch 24/35
512/512 [==============================] - 0s 154us/sample - loss: 0.1114
- accuracy: 0.9629 - val_loss: 0.1219 - val_accuracy: 0.9474
Epoch 25/35
512/512 [==============================] - 0s 156us/sample - loss: 0.1000
- accuracy: 0.9648 - val_loss: 0.1121 - val_accuracy: 0.9474
Epoch 26/35
512/512 [==============================] - 0s 152us/sample - loss: 0.0971
- accuracy: 0.9707 - val_loss: 0.1022 - val_accuracy: 0.9474
Epoch 27/35
512/512 [==============================] - 0s 159us/sample - loss: 0.0933
- accuracy: 0.9707 - val_loss: 0.0948 - val_accuracy: 0.9649
Epoch 28/35
512/512 [==============================] - 0s 160us/sample - loss: 0.0938
- accuracy: 0.9707 - val_loss: 0.0884 - val_accuracy: 0.9649
Epoch 29/35
512/512 [==============================] - 0s 144us/sample - loss: 0.0852
- accuracy: 0.9707 - val_loss: 0.0821 - val_accuracy: 0.9649
Epoch 30/35
512/512 [==============================] - 0s 151us/sample - loss: 0.0958
- accuracy: 0.9668 - val_loss: 0.0736 - val_accuracy: 0.9649
Epoch 31/35
512/512 [==============================] - 0s 148us/sample - loss: 0.0945
- accuracy: 0.9648 - val_loss: 0.0691 - val_accuracy: 0.9649
Epoch 32/35
512/512 [==============================] - 0s 147us/sample - loss: 0.0930
- accuracy: 0.9727 - val_loss: 0.0640 - val_accuracy: 0.9649
Epoch 33/35
512/512 [==============================] - 0s 150us/sample - loss: 0.0857
- accuracy: 0.9766 - val_loss: 0.0615 - val_accuracy: 0.9649
Epoch 34/35
512/512 [==============================] - 0s 151us/sample - loss: 0.0885
- accuracy: 0.9590 - val_loss: 0.0601 - val_accuracy: 0.9649
Epoch 35/35
512/512 [==============================] - 0s 147us/sample - loss: 0.0758
- accuracy: 0.9746 - val_loss: 0.0597 - val_accuracy: 0.9825

Plots of Accuracy and Loss

In [37]:

def plotLearningCurve(history,epochs):
epochRange = range(1,epochs+1)
plt.plot(epochRange,history.history['accuracy'])
plt.plot(epochRange,history.history['val_accuracy'])
plt.title('Model Accuracy')
plt.xlabel('Epoch')
plt.ylabel('Accuracy')
plt.legend(['Train','Validation'],loc='upper left')
 plt.show()

plt.plot(epochRange,history.history['loss'])
plt.plot(epochRange,history.history['val_loss'])
plt.title('Model Loss')
plt.xlabel('Epoch')
plt.ylabel('Loss')
plt.legend(['Train','Validation'],loc='upper left')
plt.show()

In [38]:

linkcode
plotLearningCurve(history,35)