Bacterial Membrane Vesicles For Vaccine Applications
Bacterial Membrane Vesicles For Vaccine Applications
Bacterial Membrane Vesicles For Vaccine Applications
com/science/article/pii/S0169409X22001843
Manuscript_9d799fa136bb29858bcf298dee15b0f6
Nishta Krishnan, Luke J. Kubiatowicz, Maya Holay, Jiarong Zhou, Ronnie H. Fang*, and
Liangfang Zhang*
© 2022 published by Elsevier. This manuscript is made available under the Elsevier user license
https://www.elsevier.com/open-access/userlicense/1.0/
Abstract
Vaccines have been highly successful in the management of many diseases. However,
there are still numerous illnesses, both infectious and noncommunicable, for which there are no
clinically approved vaccine formulations. While there are unique difficulties that must be
overcome in the case of each specific disease, there are also a number of common challenges that
have to be addressed for effective vaccine development. In recent years, bacterial membrane
vesicles (BMVs) have received increased attention as a potent and versatile vaccine platform.
BMVs are inherently immunostimulatory and are able to activate both innate and adaptive
immune responses. Additionally, BMVs can be readily taken up and processed by immune cells
due to their nanoscale size. Finally, BMVs can be modified in a variety of ways, including by
genetic engineering, cargo loading, and nanoparticle coating, in order to create multifunctional
platforms that can be leveraged against different diseases. Here, an overview of the interactions
between BMVs and immune cells is provided, followed by discussion on the applications of
BMV vaccine nanotechnology against bacterial infections, viral infections, and cancers.
nanotechnology
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1. Introduction
diseases, helping to prevent their spread across the global population [1]. The power of vaccines
has further been highlighted by the current pandemic, where formulations against the severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) have proven highly effective [2]. With the
ever-present threat of emerging pandemics, as well as the growing incidence of other vaccinatable
diseases such as cancer, the need for continued development on potent vaccine formulations is
apparent. Researchers are continually searching for novel platform technologies with wide
applicability, simple production schemes, and the ability to achieve strong immune potentiation.
Recently, bacterial membrane vesicles (BMVs) have emerged as useful components that can be
incorporated into new vaccine formulations [3]. These naturally occurring nanostructures have
many useful biological functions that can be leveraged for immune-related applications [4-6]. In
nature, BMVs can hold and distribute nutrients, virulence factors, and toxins while also depleting
antibacterial molecules generated by the host [7, 8]. Additionally, due to their biogenesis from the
surface of bacteria, BMVs display a wide range of bacterial membrane antigens that can serve as
prime vaccine targets [9]. Generally between 50-200 nm in size, BMVs have suitable dimensions
that allow them to be readily taken up and processed by immune cells. As they contain a high
potentiators, BMVs are naturally self-adjuvanting and effective drivers of the innate immune
system. Several studies have highlighted the ability of BMVs to induce long-lasting humoral and
Compared to traditional vaccination approaches, BMVs show great promise due to their
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have emerged as an attractive platform for vaccine development [13-16]. Research over the last
decade has demonstrated BMVs as powerful, economical, and flexible tools for the delivery of
various vaccine antigens, including those from bacterial, viral, and even cancer sources (Fig. 1).
In this review, we first introduce BMVs and various approaches for their production and
functionalization. We then discuss the activation of the immune system by these naturally
2. Overview of BMVs
Bacteria release membrane vesicles that are capable of various biological functions,
including exerting virulence, transferring genetic material, and modulating cellular signaling
[17]. With these abilities, BMVs represent a powerful platform that can be leveraged to treat and
prevent a wide range of diseases. Understanding the structure, biogenesis, and opportunities for
Ranging from 20-400 nm, BMVs are natural transporters that carry a wide range of
proteins, toxins, and nucleic acids [18]. With the differences in architecture between Gram-
negative and Gram-positive bacteria, there are variances in the biogenesis and composition of
their respective BMVs. Gram-negative bacteria are characterized by a cellular envelope that
consists of three distinct layers [19]. The innermost is a fluid phospholipid bilayer, while the
Finally, the outermost layer is a phospholipid membrane containing LPS. This outer membrane
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encases the BMVs as they are produced by Gram-negative bacteria [20]. BMVs from Gram-
negative bacteria can be produced through blebbing from the outer membrane, or spontaneous
cell lysis in which membrane fragments from lysed bacteria reform around cellular components
[18]. Gram-positive bacteria are surrounded by a thick and rigid cell wall outside of their
cytoplasmic membrane layer [19]. In Gram-positive bacteria, BMVs are thought to be released
via the enzymatic degradation of the rigid cell wall, which results in the generation of pores
through which membrane vesicles can protrude [18]. Similar to those from Gram-negative
bacteria, Gram-positive BMVs contain a variety of proteins, nucleic acids, and toxins, but they
Upon being secreted from bacteria, BMVs must be isolated before they can be further
[21]. While the ultracentrifugation of bacterial culture supernatant remains a widely used process
to collect BMVs, it faces many challenges, including low yields, larger and varied vesicle sizes,
and poor scalability. To isolate BMVs by filtration, culture supernatant is passed through a
porous membrane with a given molecular weight cutoff, generally within the range of 50 to 100
kDa [22]. Through this process, proteins that are not associated with the BMVs are removed.
Filtration techniques generally offer consistent yields and low batch-to-batch variability, but are
unable to fully remove large protein aggregates and other contaminants [21]. Finally, in
are added into the culture supernatant to modify the surface charges of BMVs [23]. This reduces
the colloidal stability of the vesicles, thus causing them to aggregate, which allows for facile
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process can potentially damage important proteins while also co-precipitating soluble protein
contaminants. Many BMVs isolated by these traditional methods have been developed as
While basic isolation processes can be employed to purify out many toxins and harmful
components of bacteria, toxicity and safety remain a key concern when using BMVs [21]. As
such, further purification to remove larger extracellular materials such as flagella, pili, and protein
aggregates is highly important. Along these lines, more sophisticated purification techniques have
been employed. Due to their high lipid content, BMVs commonly have a lower density compared
to soluble proteins that are secreted by bacteria, enabling them to be effectively processed by
density gradient centrifugation [28]. After centrifugation, individual fractions can be collected and
analyzed to identify the precise location of the BMVs. In cases where high purity and size
homogeneity are an important consideration, filtration techniques such as gel sieving or size
exclusion chromatography can provide a suitable approach. However, the application of these
techniques oftentimes comes at the cost of reduced yield. BMV vaccine production can involve a
supernatant was first passed through a 100 kDa filtration device, followed by centrifugation on an
iodixanol density gradient (Fig. 2a) [29]. Analysis of the derived BMVs showed retention of
The incorporation of payloads into or onto BMVs can improve their pharmacological
properties. Several approaches for cargo loading have been developed, including encapsulation
into the interior of the BMVs, or conjugation onto the exterior through surface modification
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approaches [30]. BMVs can be functionalized either after isolation or during biogenesis, with
As they contain a lipid bilayer structure, BMVs are capable of carrying both hydrophobic
and hydrophilic compounds. Incorporation of payloads after the isolation and purification of
BMVs from culture can be accomplished in a variety of ways. Passive methods such as
diffusion, including along chemical gradients, is a common approach for cargo loading [31].
Passive loading is suitable for positively charged molecules that are drawn to the negatively
compounds cannot be loaded efficiently into BMVs through purely passive approaches. In such
cases, techniques such as electroporation or ultrasonication can be used to generate pores in the
BMVs and allow for payload passage through the membrane [30]. Cell-penetrating peptides and
allow for cargo entry. In an example of membrane destabilization, electroporation was used to
generate pores in BMVs derived from Pseudomonas aeruginosa, allowing gold nanoparticles 10
payloads with bacteria cultures. The bacteria engulf the molecule of interest, which is then
packaged into any BMVs that are subsequently produced [30]. This approach was leveraged to
load antibiotics into BMVs derived from P. aeruginosa [33]. Because the bacteria are resistant to
aminoglycosides, these antibiotics could be effectively packaged into the secreted BMVs for the
used as long as the resistance of the source bacteria is not mediated by the enzymatic degradation
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2.4. Genetically modified BMVs
bacteria for a variety of purposes. As such, there is significant potential to improve BMVs
through the genetic manipulation of their source bacteria. Genetic engineering can be employed
to reduce toxicity, improve yield, improve targeting to disease sites or cells of interest, and
Particularly in the case of BMV vaccines derived from Gram-negative bacteria, the
presence of endotoxins is a major concern. Genetic manipulation of the parent bacteria to modify
endotoxin production is a potential avenue for generating safer vaccine platforms. In a BMV-
based vaccine derived from N. meningitidis, toxicity was reduced by modifying genes related to
the production of LPS [34]. The genetically modified BMVs were still able to elicit dendritic cell
maturation, indicating their potential for vaccine applications. This formulation was further
engineered to increase BMV yield via the deletion of the rmpM gene [35]. Bacteria with RmpM
deletions display loosely attached outer membrane, allowing for easier release of BMVs and
increased yield. Another approach to increase the yield of BMVs is through modulation of the
Tol-Pal system [22]. The Tol-Pal system is comprised of 5 proteins in the envelope of Gram-
negative bacteria and is essential for maintaining the integrity of the bacterial outer membrane
[36]. Introduction of a mutant tolB gene resulted in increased OMV release in E. coli, Salmonella
Genetic engineering can also be leveraged to introduce antigenic epitopes onto the BMV
surface. Such an approach was used to display an N. meningitidis antigen, NspA, onto the
surface of the commensal Neisseria flavescens [40]. The NspA-expressing BMVs derived from
these engineered bacteria were able to confer protection against a lethal challenge using N.
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meningitidis. Another method of introducing epitopes is to recombinantly fuse protein sequences
to native proteins that are naturally expressed on the surface of BMVs [22]. This concept was
found on the surface of E. coli BMVs [41]. Taking advantage of this process, functional
enzymes, fluorescent proteins, and antibodies were successfully expressed. This approach was
also leveraged to introduce functional molecules onto the surface of S. enterica BMVs [42]. A
similar engineering mechanism was developed using the autotransporter (AT) pathway, which
leverages a translocation signal for expression on the outer membrane [43]. Genetic fusion to an
AT protein allowed for the presentation of heterologous proteins on the surface of E. coli and
Salmonella Typhimurium BMVs [44]. Non-native anchoring proteins can also be exploited to
engineer epitopes onto the surface of BMVs through post-production binding. A notable example
is the use of SpyTag and SpyCatcher, a protein-based pair designed to form covalent bonds with
each other [45]. In an example, SpyTag was expressed on the surface of E. coli BMVs, while the
enzyme phosphotriesterase was genetically conjugated to SpyCatcher (Fig. 2c) [46]. Through the
covalent linking of SpyTag and SpyCatcher, phosphotriesterase was immobilized onto the
In recent years, cell membrane coating nanotechnology has established itself as a versatile
and powerful approach for nanoparticle functionalization [47]. As the outermost layer of the cell,
the membrane is responsible for many interactions with the surrounding environment. By taking
this outermost layer and transferring it to surface of a nanoparticle core, the resulting membrane-
coated nanoparticle exhibits many properties of the parent cell. First conceptualized using red
blood cell membrane to coat polymeric nanoparticles [48], this technology has since been
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generalized to utilize the membrane from platelets, macrophages, T cells, neutrophils, endothelial
cells, and stem cells for a diverse range of applications, including detoxification, drug delivery,
immune manipulation, and theranostics [49-54]. Recent works have shown the potential of using
cell membrane-coated nanoparticles, including those derived from bacteria, as a platform for
vaccination [55-59]. In contrast to free BMVs, the size of BMV-coated nanoparticles can be more
readily controlled, and the core can be loaded with a wider range of payloads. This enables them
In one case, BMVs derived from E. coli were coated onto gold nanoparticles with a
nanoparticles were able to induce potent dendritic cell maturation and significantly elevated the
coli. A similar formulation leveraged BMVs derived from H. pylori to coat polymeric
nanoparticles through a facile sonication process (Fig. 2d) [58]. In another example, BMVs
derived from S. aureus were coated onto polymeric cores preloaded with either vancomycin or
rifampicin [60].
Over the course of their evolution, bacteria have adapted to survive and proliferate in
their host environment [61]. In parallel, the mammalian immune system has evolved mechanisms
that are responsible for recognizing and eradicating invading pathogens (Fig. 3). Various PAMPs
from bacteria, including those based on proteins, lipids, glycans, and nucleic acids, can bind to
different families of pattern recognition receptors (PRRs) present on host cells, initiating a strong
immune response (Table 1) [62, 63]. Originating from bacteria, BMVs share many of the same
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immunomodulatory features, enabling them to interact and interface with different immune cell
Against bacteria, the first step in the activation of the immune system occurs as a result of
the interaction between PAMPs and PRRs on innate immune cells [64]. Among the PRRs, Toll-
like receptors (TLRs) play a vital role in the response against BMVs [65]. TLRs are expressed by
innate immune cells such as dendritic cells (DCs) and macrophages, as well as by non-immune
cells such as fibroblasts and epithelial cells. Cell surface TLRs mainly recognize microbial
membrane components such as lipids, lipoproteins, and proteins [65]. Notable cell surface TLRs
include TLR4 and TLR5, which recognize bacterial lipopolysaccharides and flagellin,
respectively [66]. Others include TLR1, TLR2, and TLR6, which together can recognize a wide
and tGPI-mucin [65]. Intracellular TLRs are responsible for recognizing bacterial and viral
nucleic acids, as well as self-nucleic acids resulting from disease conditions such as
and chemokine production via the nuclear factor-κB (NF-κB) signaling pathway and TIR-
Besides the TLR family, other receptors also participate in the recognition of bacterial
class of cytoplasmic PRRs [62]. One subclass of NLRs are the NOD receptors, which include
NOD1 and NOD2 that recognize the bacterial peptidoglycan components, diaminopimelic acid
and muramyl dipeptide, respectively [68]. These NLRs activate NF-κB, mitogen-activated protein
kinases (MAPKs), and interferon (IFN) regulatory factors [69]. Another subclass of NLRs is the
NLRP receptors, NLRP1 and NLRP3, which are characterized by the presence of a pyrin domain
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that can activate the inflammasome pathway [70]. NLRP receptors are activated by PAMPs such
as bacterial toxins. Finally, it has been seen that the presence of cytosolic DNA can trigger
cytokine secretion via the stimulator of interferon genes (STING) pathway [71]. Cytosolic DNA
activates host cyclic GMP-AMP synthase, inducing the production of cyclic dinucleotides, which
engage STING to activate NF-κB and interferon regulatory factor 3 (IRF3) signaling. Other PRRs
include the retinoic acid-inducible gene 1-like receptors and the C-type lectin receptors, which
play a large role in the detection of viral and fungal pathogens, respectively [72].
The interactions between PRRs and PAMPs lead to the activation and maturation of
antigen-presenting cells (APCs) through different signaling pathways, and this is essential for the
transition from innate to adaptive immunity [62]. NF-κB, MAPK, and inflammasome activation
inflammatory mediators in APCs such as DCs and macrophages [67]. Upon engagement with
APCs presenting their cognate antigen via major histocompatibility complexes (MHCs), naïve T
cells are activated and differentiate into different subsets [73]. Importantly, active helper T cells
produce proinflammatory cytokines and chemokines, and they interface with B cells to stimulate
antibody production [74]. Inflammasome activation during infection has been shown to enhance
the proliferation and survival of effector CD8+ T cells and induce IFN-γ production from
memory cytotoxic T lymphocytes [75]. Overall, the priming of the adaptive immune system
allows for a concerted and specific response to clear active infections, while also protecting
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Bacterial infections are commonly managed therapeutically with antibiotics that target
various biochemical mechanisms. Despite the success of this strategy since the discovery of
penicillin in the early 1900s [76], the direct selection pressure that is exerted on bacteria by
antibiotics has led to the generation of drug-resistant bacterial strains [77]. Additionally, research
and development efforts towards new antibiotics have been insufficient to keep pace with the rise
of antibiotic resistance [78]. As such, novel alternative approaches for the clinical management
of bacterial infections have become increasingly important. Along these lines, various
biomimetic prophylactics and therapeutics have demonstrated potential for overcoming the
challenges posed by antibiotic-resistant bacteria [49, 58, 79-82]. The use of BMVs in the design
vesicles serve as an excellent training tool for the immune system due to their nanoscale size,
wide range of bacterial antigens, and inherent adjuvanting properties. They can also be
genetically engineered or paired with other nanomaterials to further enhance their utility.
Gram-negative bacteria have a thin peptidoglycan cell wall and the presence of a
secondary exterior membrane from which outer membrane vesicles (OMVs) are naturally
released [20]. OMVs display antigens specific to their source bacteria along with PAMPs such as
LPS, which function as adjuvants for the induction of strong immune responses [83]. Efforts to
enhance the base characteristics of OMVs have also been undertaken through processes such as
genetic engineering and combination with nanoparticle-based platforms. Overall, OMVs have
demonstrated remarkable success as vaccines against a wide variety of bacteria. Most notably,
the clinically available Bexsero vaccine has been approved for use against N. meningitidis [84].
This vaccine is composed of meningococcal OMVs that serve as a source of porin A, along with
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three recombinant antigen factors: H binding protein, neisserial adhesin A, and neisserial
heparin-binding antigen [85]. Interestingly, this same vaccine formulation has also demonstrated
the ability to induce protective antibody titers against the similar bacteria Neisseria gonorrhoeae,
which points to the potential versatility of multiantigen display using OMV-based vaccines.
OMVs isolated from multidrug-resistant A. baumannii strains have also shown the ability
to protect against the source pathogen in murine models [24, 86]. Improvements were achieved
through increases in specific antibody production that helped to reduce bacterial load. One study
immunized mice with ATCC 19606 OMVs and found near-perfect survival rates against the
source bacterial strain and two other independent A. baumannii strains that were otherwise over
80% lethal [86], once again emphasizing the potential of cross-protective immunity afforded by
OMV vaccines. A different study employing OMVs derived from an A. baumannii strain
afflicting intensive care unit patients also reported survival advantages [24]. In both sepsis and
pneumonia models of infection, vaccinated mice showed enhanced survival and reduced
bacterial loads. It was demonstrated that this OMV vaccine facilitated the production of antisera
with opsonophagocytic properties. Similar OMV-based vaccine approaches have also shown
Genetically engineering source bacteria is an approach that has been used to improve
upon the inherent benefits offered by OMVs. Bacteria can be manipulated to increase their OMV
production, decrease their toxicity, or modulate their antigen expression profile. For example,
Salmonella Paratyphi were transformed with a plasmid encoding the Salmonella Typhi-specific
Vi antigen to induce its presentation on the outer membrane of the bacteria [95]. This caused
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OMVs shed by the bacteria to display both the Vi antigen from Salmonella Typhi and the O:2
antigen from Salmonella Paratyphi. Mice immunized with the bivalent OMVs developed
significant antibody titers specific against both bacteria, highlighting the potential of genetic
another example, E. coli OMVs were genetically modified to display Omp22, which is an outer
membrane protein from A. baumannii bacteria [96]. Surface presentation of the Omp22 antigen
was achieved by fusing it to ClyA found on E. coli OMVs. Active vaccination with the
engineered OMVs significantly reduced bacterial load and decreased serum cytokine levels in
mice challenged with A. baumannii relative to various controls. Furthermore, mice immunized
with Omp22-expressing OMVs achieved a 100% survival rate when challenged with an
otherwise lethal dose A. baumannii, whereas mice receiving wild-type OMVs only had a 63.6%
survival rate. Genetically engineering antigens onto BMVs has shown efficacy against a number
have been established for vaccine applications. In an example, nitrogen cavitation was employed
to produce double-layered membrane vesicles (DMVs) comprised of both the inner and outer
membranes of P. aeruginosa (Fig. 4) [100]. At 250 nm in size, these DMVs were shown to be
larger on average than OMVs. When administered in vivo, the DMVs were capable of generating
maturation markers of DCs, and interleukin (IL)-2 levels from splenic T cells. Importantly, the
aeruginosa challenge. Along similar lines, another work employed a process in which K.
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pneumoniae were passed through a high-pressure homogenizer, causing them to break apart and
self-assemble into bacterial biomimetic vesicles (BBVs) [101]. This process allowed for facile
high-yield production, and the BBVs contained little intracellular protein or nucleic acid
contamination. In a murine model, the BBVs promoted a potent immune response that protected
The integration of BMVs with other nanomaterials can help to enhance vaccine efficacy
by combining the benefits inherent to each component [47, 102]. This strategy has been utilized
by coating 30-nm gold nanoparticles with OMVs to produce a nanovaccine against E. coli
infection (Fig. 5) [57]. The gold nanoparticle cores provided a stable substrate for the OMVs,
thus reducing the average size while improving uniformity. This enabled the formulation to
readily drain into the lymph nodes following subcutaneous injection in vivo, leading to improved
CD40, CD80, and CD86. Vaccination with the OMV membrane-coated nanoparticles also
induced high avidity anti-E. coli IgG titers while promoting a Th1/Th17-biased T cell response.
A similar system used bovine serum albumin nanoparticles coated with OMVs from
specific antibody titer production, thus protecting vaccinated mice from a lethal bacterial
challenge. Other enhancement strategies have involved the combination of OMVs with chitosan
for mucus adhesion [104] or zein nanoparticles coated with a Gantrez AN-119–mannosamine
thick peptidoglycan cell wall [106]. While these bacteria are capable of releasing extracellular
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vesicles (EVs), the process is much less understood compared to the formation of OMVs in
Gram-negative bacteria. Regardless, efforts have been undertaken to study and develop Gram-
positive EVs for vaccine applications. It was discovered that phenol-soluble modulins and
autolysins were key factors in the release of S. aureus EVs by weakening the cytoplasmic
membrane and cell wall, respectively [107], and this information could be leveraged in the future
also assessed the vaccination efficacy of EVs isolated from a mutant S. aureus strain that
expressed detoxified cytolysins. The formulation elicited the safe production of toxin-specific
antibody titers that provided a significant survival advantage to mice challenged with different S.
aureus strains.
Due to the complex and poorly understood nature of Gram-positive EV production, many
BMV-based vaccination efforts have instead opted to leverage genetically engineered OMVs
from Gram-negative bacteria. For example, E. coli cells were modified to express heterologous
group A Streptococcus (GAS) antigens in their periplasmic space for inclusion in the lumen of
OMVs [108]. The natural immunogenicity of the E. coli OMVs promoted the production of GAS
antigen-specific antibody titers that helped improve the survival rate of immunized mice when
exposed to GAS. Another genetic engineering strategy created detoxified E. coli OMVs
different pathogens [109]. For this study, the researchers were able to engineer PNAG-
expressing OMVs with variable degrees of acetylation, and it was determined that deacetylated
PNAG evoked the strongest specific antibody titers. This resulted in better survival rates for
Overall, the study emphasized the potential that genetic engineering holds for the development of
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broadly protective vaccines. Genetically engineered BMVs have also shown success against
BMV vaccines against Gram-positive bacteria. For instance, mesoporous silica nanoparticles
were loaded with indocyanine green and then coated with S. aureus EVs [111]. Laser irradiation
of DCs after uptake of the nanoformulation resulted in elevated local temperature that facilitated
endosomal escape, thus increasing the production of reactive oxygen species and enhancing
proteasome activation. This allowed for the efficient downstream activation of both CD4+ and
CD8+ T cell immune responses. In an in vivo efficacy study, immunized mice exhibited
decreased lesion formulation and lower bacterial loads when challenged with S. aureus.
Viruses can be highly contagious and have been responsible for some of the most
pressing public health crises in recent history. While there are a limited number of antiviral
therapeutics available, vaccination has been a highly effective strategy for the management of
viral infections. The smallpox vaccine, which employed a live-attenuated version of the virus,
was developed by Dr. Edward Jenner in the 18th century [112]. Viral prophylactics have since
been developed using a variety of strategies that include inactivated vaccines, subunit vaccines,
and, most recently, mRNA vaccines [113-115]. While many advances have been made, there is
still a strong need for viral vaccines that are more effective, safer, and readily adaptable to
emerging pandemics. BMVs are suitable for viral vaccine development due to their inherent
been developed to combat a wide range of viruses, including those responsible for tropical
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4.2.1 Influenza
Various strains of influenza place a large burden on the healthcare system annually. The
virus mixtures (Fluzone, Fluarix, and FluLaval) and a quadrivalent live-attenuated virus
delivered by a nasal spray (FluMist) [120]. While they can be highly effective, these vaccines
oftentimes fail to predict the most prevalent annual strains and may only confer partial immunity
[121]. Whole bacterial vectors, such as non-pathogenic Gram-positive lactic acid bacteria, have
been engineered to express influenza antigens alongside natural adjuvants to induce antigen-
specific immunity [122]. In addition to these whole cell platforms, bacterial OMVs have shown
strong potential to carry influenza antigens for effective vaccination [14]. OMVs are often first
modified to reduce their toxicity, which is largely mediated by the presence of LPS on their
surface [123]. Because bacterial OMVs are already strongly immunogenic, there is oftentimes no
need to further engineer them to include an adjuvant. In one example, E. coli OMVs co-
expressing a stable chimeric fusion protein of H1N1 and Middle East respiratory syndrome
coronavirus antigens were produced and administered intramuscularly to mice [124]. The
vaccinated mice generated antibody titers against both heterogenous antigens and demonstrated
improved survival when challenged with H1N1 influenza. In addition to being engineered to
express viral antigens, OMVs can also be used directly as co-administered adjuvants to enhance
cellular immunity [125]. As compared to the widely used alum, endotoxin-attenuated E. coli
OMVs promoted equivalent antiviral titer generation when used as an adjuvant; additionally, the
While there has been increased interest in bacteria-mediated influenza vaccination in the
past decade, the majority of ongoing and completed clinical trials in this field have focused on
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the use of probiotic administration as an adjuvant for already approved influenza vaccines, or
they have failed to elicit satisfactory influenza-specific antibody generation in humans [126,
127]. Continued work to improve the safety profile and immunogenicity of bacteria-based
influenza vaccines, along with an increased focus on the use of BMVs as the vector or adjuvant,
may enable the successful development of a clinically viable formulation in the future.
4.2.2 Coronaviruses
The ongoing coronavirus disease 2019 (COVID-19) pandemic, having infected over 286
million people and killed over 5.4 million as of December 2021, has highlighted the necessity of
rapid vaccine development in the face of fast-spreading disease. Severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) utilizes the receptor binding domain (RBD) of its spike
protein to enter host cells [128]. Because of the importance of this process in the propagation of
SARS-CoV-2, the spike protein has become the primary target for COVID-19 vaccines, yielding
multiple formulations that have received an Emergency Use Authorization in the United States
[129]. Vaccination with the protein alone yields little to no immune protection, and thus the
antigen must be delivered in an immunostimulatory format. Several works have explored the use
of whole bacteria-based vectors to express and deliver SARS-CoV-2 antigens to promote strong
Due to their ease of engineering and their inherent adjuvating nature, BMVs have also
been utilized in the development of novel COVID-19 vaccine formulations. Along these lines,
shown promise. In one instance, recombinant RBD was co-administered with N. meningitidis
OMVs [132]. Vaccination with the mixture elicited anti-RBD IgG and IgA titers as well as
production of IFN-γ and IL-17. Bacterial OMVs can also be engineered to directly express RBD
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on their surface [133-135]. As an example, ClyA was fused to RBD and expressed in E. coli,
resulting in display of the viral antigen on the surface of the OMVs. BMV yield is often a
[135]. Vaccination of mice with the RBD-expressing BMVs generated antigen-specific IgGs that
were capable of blocking the interaction between the SARS-CoV-2 spike protein and its
virus (HIV) remains elusive [136]. As of 2020, there are 37.7 million cases of HIV worldwide
with an estimated 1.5 million new cases yearly [137]. Current approaches to HIV vaccination
have exhibited adverse effects, low targeting capabilities, and poor bioavailability [138]. As
such, development of a safe and effective vaccine against the virus is of critical importance.
A novel DNA vaccine platform comprised of BMVs from Salmonella Typhi Ty21a was
used to deliver an HIV-1 glycoprotein, gp140, as a vaccine against HIV-1 [118]. In this platform,
BMVs were derived from lysed Salmonella Typhi, and DNA encoding for gp140 was loaded
through chemical destabilization of the BMV membrane with sodium acetate. Mice vaccinated
with the DNA-loaded BMVs showed significantly higher mucosal antibody responses as well as
increased IL-10 production. Another platform leveraged bacterium-like particles (BLPs) based on
Lactococcus lactis to generate mucosal and humoral immunity against HIV-1 [139]. In the study,
gp120 was conjugated to a peptidoglycan-binding tag capable of attaching to the L. lactis cell
wall. With intranasal vaccination, the gp120-functionalized BLPs successfully induced mucosal
immunity in mice and produced neutralizing activity against HIV-1 pseudoviruses in guinea pigs.
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3.2.3 Hepatitis viruses
The hepatitis viruses are a set of five viruses that cause liver inflammation [140].
Currently, the most medically relevant are hepatitis A, B, and C, with the hepatitis B virus
(HBV) causing the majority of hepatitis-related deaths. While there is a safe and effective
vaccine to protect against HBV, a hepatitis C virus (HCV) vaccine has yet to be developed [141].
While direct-acting antiviral treatments are effective against HCV infection, prevention remains
a primary goal. Along these lines, L. lactis was engineered to produce polyhydroxybutyrate
inclusions displaying the hepatitis C virus core antigen [142]. Vaccination of mice with the
factor α, and IL-6, as well as low levels of IgG2c antibodies. With administration alongside the
adjuvant Emulsigen, a strong IgG1 antibody and cytokine response was generated. Another
vaccination approach against HCV leveraged a fusion protein encoding for a truncated portion of
the core antigen fused to the nonstructural protein 3 of HCV [143]. The antigen was then
admixed with purified N. meningitidis BMVs and administered subcutaneously to mice. This
formulation was able to generate high levels of IgG antibodies, proinflammatory cytokines, and
A BMV-based vaccine against HBV was developed by anchoring HBV core protein to
either the inner or outer membrane of E. coli [144]. The antigen was genetically fused with
with purified core protein, the modified BMVs were able to induce higher levels of HBV-
specific IgG antibodies. A related study expressed the HBV core antigen in attenuated
Salmonella Typhimurium and Salmonella dublin bacteria strains [145]. These live recombinant
bacteria were able to generate high titers after a single oral immunization.
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4.2.5 Human papillomavirus
Human papillomavirus (HPV) is a small non-enveloped DNA virus that represents the
main causative agent of cervical cancer in women. Fortunately, two prophylactic HPV vaccines,
Gardasil and Cervarix, have been approved for clinical use, providing protection against HPV
types 6, 11, 16, and 18, which together cause approximately 70% of cervical cancer. When
administered prophylactically, these vaccines have a near 100% protection rate [146]. While
extremely effective, HPV vaccines are expensive and require a cold chain, which negatively affect
their accessibility. In addition, the vaccines are developed against the L1 capsid protein, which,
although effective, is highly type-specific. In contrast, vaccination with the L2 capsid protein has
been shown to generate broad cross-neutralizing antibodies against HPV, although the antigen on
its own has low immunogenicity [147]. A common bacteria-mediated approach to developing HPV
vaccines has been the surface display of antigens such as L2 on orally administered bacteria. In
one instance, HPV-16 L2 protein was expressed on the surface of Lactobacillus casei and orally
administered to BALB/c mice periodically over the course of a month [148]. Mice vaccinated with
the engineered bacteria developed serum and mucosal IgG and IgA titers that protected them
against challenge with heterologous and homologous pseudoviruses. While BMV-based vaccines
for preventing HPV have not yet been reported, there is potential for future development along
these lines.
cannot be applied to those who already infected. As such, therapeutic vaccines designed against
HPV-driven malignancies have also been of great interest to researchers. In these cases,
oncogenesis-related proteins, such as E6 and E7, serve as the main antigenic targets. Listeria
23
vector, as it elicits durable CD4+ and CD8+ T cell responses [149]. Axalimogene filolisbac,
immunotherapy currently undergoing clinical trials [146]. Preliminary data show vaccine safety
and improvements in survival rate for those suffering from late-stage HPV-induced cancers. L.
lactis is another bacterial strain that has shown promise as a vector for delivering the E7 protein
of E7 onto E. coli OMVs has been shown to elicit antigen-specific cellular immunity [119].
in a TC-1 model.
4.3 Cancer
utilized for cancer immunotherapy. Owing to a wide abundance of PAMPs, bacteria are highly
immunogenic and can effectively recruit and activate immune cells at tumor sites [152-154].
However, the use of intact bacteria poses safety concerns [155], and thus an alternative approach
has been to employ bacterial ghosts that are void of intracellular contents [156, 157]. The
hollowed-out bacteria can be further loaded with adjuvants or antigenic payloads to enhance
efficacy and specificity. Compared with their free form counterparts, antigens loaded into
bacterial ghosts have demonstrated better retention after subcutaneous administration, increased
immune activation, and improved tumor growth suppression [158]. In addition to bacterial
ghosts, OMVs have also been used to overcome immunosuppressive tumor microenvironments
[159]. The small size of OMVs enables efficient lymphatic drainage upon subcutaneous injection
and enhanced localization to solid tumors through passive targeting effects when introduced
systemically [160]. As OMVs can naturally accumulate at tumor sites and utilize local cancer
24
cells as antigen sources in situ, they can be applied therapeutically against multiple types of
cancer. For example, administration of a low intravenous dose of E. coli OMVs resulted in
complete tumor eradication in CT26 and MC38 colorectal cancer, 4T1 metastatic breast cancer,
A major advantage of BMVs for cancer vaccine applications is the flexibility afforded by
their ease of genetic engineering. As an example, E. coli was genetically modified to release
OMVs in situ in response to the presence of arabinose [161]. The secreted OMVs contained
personalized tumor antigens and an Fc fragment for enhanced DC uptake and transcytosis across
the intestinal epithelium. Oral administration of the reprogrammed E. coli along with arabinose
effectively prevented lung metastasis in a B16-OVA model and controlled tumor growth in an
MC38 subcutaneous tumor model. In another instance, genetic engineering was employed to
express basic fibroblast growth factor (BFGF) on OMVs to elicit autoantibodies [162]. BFGF is
an angiogenic molecule with numerous pro-tumorigenic functions such as augmenting tumor cell
[163, 164]. Immune-mediated removal of BFGF effectively disarmed tumors of a vital tool
utilized for their survival. Another strategy to engineer proteins onto OMVs has been through
fusion with ClyA, which was exemplified by the expression of programmed cell death protein 1
(PD-1) on OMVs to prevent T cell exhaustion [165]. OMVs have also been engineered such that
they can be rapidly modified after secretion in a modular manner [166]. In this case, ClyA was
fused with either SpyCatcher or SnoopCatcher, thus enabling rapid capture of tumor neoantigens
with the corresponding SpyTag or SnoopTag modifications, respectively. Utilizing this plug and
display system, potent antitumor immunity was achieved in a B16-F10 metastasis model and an
25
Cancer immunotherapy with OMVs has been combined with other types of therapeutics
to synergistically amplify antitumor efficacy. As OMVs are nanovesicles that can be localized to
tumor sites, chemotherapeutics such as doxorubicin and paclitaxel have been encapsulated inside
[152, 167]. Compared to OMVs alone, this chemoimmunotherapy approach has resulted in
significantly better attenuation of tumor growth. In another example, OMVs derived from
attenuated Salmonella was functionalized with an RGD tumor-targeting peptide and coated onto
polymeric micelles loaded with tegafur, a prodrug of fluorouracil that not only induces tumor
apoptosis, but also sensitizes cancer cells to cytotoxic T lymphocytes [168]. Another common
indocyanine green [169]. After accumulation in tumors, laser ablation releases numerous cancer
antigens for immune priming. In the absence of photothermal agents, Salmonella Typhimurium
and its secreted OMVs were found to naturally sensitize tumors for photothermal therapy
through tumor darkening caused by thrombosis and the extravasation of red blood cells [170,
171]. Purely external approaches to tumor destruction such as radiation therapy can also be used
to augment the effectiveness of OMVs [172]. To further improve treatment outcomes in this type
of scenario, OMVs were modified with maleimide, allowing them to capture tumor antigens
released after radiotherapy [173]. Moreover, the modified OMVs were wrapped onto a polymeric
core designed for endosomal escape and loaded with CpG for additional immune stimulation.
Using this platform, significant tumor eradication was achieved in B78 melanoma and NXS2
micromotors (Fig. 7) [174]. The micromotor formulation was injected directly into tumors,
resulting in considerable physical disruption and damage. Necrotic tumor cells were
26
Compared to a non-propelling micromotor control, treatment with the active OMV-loaded
micromotors in MC38, CT26, and B16-F10 tumor models resulted in considerable tumor
clearance at the primary site and improved control of distal tumor growth.
Antigen-rich cancer cell membrane vesicles and exosomes have been incorporated with
bacteria-derived cancer vaccines to increase their specificity.[175] Along these lines, the co-
administration of B16-F10 exosomes and synthetic E. coli vesicles was shown to control tumor
growth and metastasis, in addition to sensitizing tumors to anti-PD-1 therapy [176]. The
synthetic bacterial vesicles were purified from intact bacteria through treatment with lysozyme
and high pH to eliminate periplasmic and cytosolic proteins, followed by dissolution in an ionic
detergent to solubilize the inner membrane. This ultimately resulted in the generation of vesicles
with an improved safety profile that maintained strong adjuvanticity. Beyond co-administration,
other strategies have adopted hybrid vesicles synthesized by fusing cancer cell membrane with
bacteria-derived membrane [177]. Compared with the simple mixture of pure cancer cell
membrane vesicles and bacterial vesicles, a fusion membrane platform guarantees colocalization
of the antigens and adjuvant, which can significantly enhance immune activation and treatment
outcomes [178]. Using this approach, mice that were vaccinated with nanoparticles coated with a
fusion membrane composed of melanoma membrane vesicles and attenuated Salmonella OMVs
were fully protected from tumor challenge [179]. In a therapeutic setting, efficacy was further
BMVs contain a number of features that make them attractive for vaccine development.
This includes their ability to display proteins from different sources, natural presence of PAMPs
27
for eliciting strong immune responses, nanoscale size for efficient antigen delivery and
wide range of BMV-based nanovaccines have been developed against pathogens such as bacteria
and viruses, as well as different types of cancer. While BMV nanovaccines have demonstrated
considerable promise, there are still many challenges that these platforms face in terms of
clinical translation. First, because they must be harvested from living bacteria, there is inherent
batch-to-batch variability in size, antigen density, and overall composition that must be
accounted for during large-scale manufacturing. Strategies to lower variance include the
standardization of BMV harvesting procedures and the use of low passage number bacterial
stocks. Additionally, the coating of BMVs onto nanoparticle substrates using methods such as
physical extrusion can help to tighten the size distribution of the final formulation while
maintaining protein integrity. Stabilization using nanoparticle cores also helps to facilitate
improved uptake by APCs, thus ensuring proper antigen processing and presentation. Another
strategy for improving stability could involve the production of multi-layered crosslinked
membrane vesicles.
applications, this must be balanced with potential safety concerns associated with the
introduction of endotoxins such as LPS into human patients. Research is needed to develop more
effective isolation and purification techniques that can more precisely separate harmful bacterial
components from BMVs. Novel genetic engineering strategies for reducing the expression of
toxic molecules are highly promising, and they could ultimately lead to the production of BMVs
that are inherently safe without the need for sophisticated processing. Furthermore, repeated
vaccinations with BMVs may induce an immune response towards the carrier itself, which could
28
create off-target immune responses that attenuate immunity against the intended target antigen.
This issue may be addressed by boosting antigen density through various engineering
downregulated or knocked out. As BMV platforms become more refined, an increased emphasis
will be placed on the rational design of multi-antigenic formulations. This can streamline vaccine
production and overcome the need for mixing multiple antigens together, which is currently
While there is still significant room for improvement, great strides have already been
made in the development of BMV platforms for the clinical management of bacterial infections
and cancer [181, 182]. Continued research on BMVs will undoubtedly yield new and innovative
solutions that will address current challenges and enable mainstream adoption in the clinic.
Acknowledgement
This work is supported by the Defense Threat Reduction Agency Joint Science and
Technology Office for Chemical and Biological Defense under Grant Number HDTRA1‐18‐1‐
0014.
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Table and table captions
Table 1. Bacterial PRRs, PAMPs, and their corresponding signaling pathways. PRRs found on
host cells can be activated by various bacterial PAMPs, which in turn activate inflammatory
53
Figures and figure captions
Fig. 1. Bacterial membrane vesicles (BMVs) for vaccine applications. BMVs are derived from
bacteria and can be leveraged in the design of effective nanovaccines through common
engineering approaches including genetic surface modification, cargo loading, and nanoparticle
coating. The resulting vaccine formulations have shown promise against a wide range of
54
Fig. 2. BMVs for biomedical applications. (A) BMVs can be isolated and purified from bacterial
culture supernatant using filtration followed by density gradient centrifugation. Adapted with
permission [29]. Copyright 2021, Springer Nature. (B) Electroporation can be used to generate
pores on BMVs to facilitate cargo loading. Adapted with permission [32]. Copyright 2019,
Springer Nature. (C) A SpyTag/SpyCatcher system can be used to covalently link payloads to
the surface of BMVs. Adapted with permission [46]. Copyright 2015, American Chemical
Society. (D) BMVs can be coated onto the surface of nanoparticle cores, which aids in
stabilization and can provide additional functionality. Adapted with permission [58]. Copyright
2019, Wiley-VCH.
55
Fig. 3. Activation of the immune system by BMVs. (A) Pathogen-associated molecular patterns
(PAMPs) from BMVs induce maturation of antigen-presenting cells such as dendritic cells (DCs)
via interaction with pattern recognition receptors (PRRs). Mature DCs process and present
markers such as CD80 or CD86, promoting the activation of naïve T cells. (B) Differentiated
helper T cells interact with B cells to stimulate the production of antigen-specific protective
antibodies. (C) Differentiated cytotoxic T cells are capable of directly killing cells expressing the
target antigen.
56
Fig. 4. P. aeruginosa double-layered membrane vesicle (DMV) vaccine. (A) DMVs are
specific IgG titers. (C) Mice immunized with DMVs exhibit an improved survival rate compared
with OMV-immunized mice when challenged with a lethal dose of P. aeruginosa. Adapted with
57
Fig. 5. E. coli OMV-coated gold nanoparticle vaccine. (A) OMVs are isolated from E. coli and
coated onto a gold nanoparticle core, and the resulting formulation can be used as a vaccine to
generate a protective immune response. (B) The bacterial membrane-coated gold nanoparticles
(BM-AuNPs) outperform free OMVs in eliciting anti-E. coli IgG titers in vivo. (C) BM-AuNPs
immunity. Adapted with permission [57]. Copyright 2015, American Chemical Society.
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Fig. 6. Bacterial biomimetic vesicles (BBV) for COVID-19 vaccination. (A) E. coli expressing a
ClyA–RBD fusion protein are subjected to high pressure homogenization to yield ring-like RBD-
expressing BBV (RBD-BBV). (B) IgG responses are significantly increased in mice immunized
with RBD-BBV versus various controls. (C) Antibodies generated by RBD-BBV vaccination are
able to lower the affinity between the S1 binding domain of the SARS-CoV-2 spike protein and
its receptor, ACE2. Adapted with permission [135]. Copyright 2021, American Chemical
Society.
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Fig. 7. OMV-loaded micromotors (Motor-OMV) for combination cancer immunotherapy. (A)
OMVs are purified from E. coli and loaded onto a self-propelling micromotor. When
administered intratumorally, the micromotors induce physical destruction, which, combined with
the immunostimulatory effect of the OMVs, elicits a systemic antitumor response. (B) After
the tumor tissue. (C) Compared with a static OMV-loaded microparticle (MP-OMV) control,
Motor-OMV better control tumor growth in MC38 (top), CT26 (middle), and B16-F10 (bottom)
60