Prevalence and Characterization of Antimicrobial-Resistant Escherichia Coli
Prevalence and Characterization of Antimicrobial-Resistant Escherichia Coli
Prevalence and Characterization of Antimicrobial-Resistant Escherichia Coli
Original Article
a r t i cl e i nfo a bstr ac t
Article history: Background: Companion animals may act as antimicrobial resistance (AMR) reservoirs. This study in
Received 10 August 2023 vestigated the prevalence and AMR patterns of Escherichia coli in pets and people in close contact with pets.
Received in revised form 1 November 2023 Methods: A total of 955 samples were collected from veterinary clinics across Thailand by rectal and skin or
Accepted 3 November 2023
ear swabs from dogs and cats and fecal swabs from veterinarians, veterinary assistants, and pet owners. The
minimum inhibitory concentrations (MICs) of the obtained isolates were investigated using Sensititre™ MIC
Keywords:
plates against 21 different antimicrobial drugs.
Antimicrobial resistance
Companion animals Results: Escherichia coli from pets was frequently resistant to ampicillin (100%) and amoxicillin–clavulanic
Escherichia coli acid (100%), whereas E. coli from pet owners, veterinarians, and veterinary assistants was mostly resistant to
Veterinary tetracycline. The multiple antibiotic resistance index revealed that multidrug-resistant E. coli isolates were
frequently found in dogs (34.92%), cats (62.12%), veterinarians (61.11%), veterinarian assistants (36.36%), and
pet owners (47.62%). The most common AMR genes identified in this study were blaCTX-M, blaTEM, tetA, and
tetB, which were associated with the antimicrobial susceptibility results. Additionally, extended-spectrum
beta-lactamase (ESBL)-associated genes (i.e., blaCTX-M, blaTEM, and blaSHV) were found in 21.69%, 71.97%,
27.78%, and 21.43% of E. coli isolated from dogs, cats, veterinarians, and pet owners, respectively.
Conclusions: Our findings demonstrated the presence of AMR genes, particularly ESBL-associated genes, in
E. coli isolated from healthy pets and veterinarians. This implies that these sources of E. coli could potentially
be reservoirs for antibiotic resistance, thereby increasing the risk of harm to both humans and animals.
These findings highlight the importance of implementing effective AMR control measures in veterinary
practices, as bacteria resistant to commonly used antimicrobials are present in humans and animals.
© 2023 The Author(s). Published by Elsevier Ltd on behalf of King Saud Bin Abdulaziz University for Health
Sciences. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/li
censes/by-nc-nd/4.0/).
Background
https://doi.org/10.1016/j.jiph.2023.11.006
1876-0341/© 2023 The Author(s). Published by Elsevier Ltd on behalf of King Saud Bin Abdulaziz University for Health Sciences. This is an open access article under the CC BY-NC-
ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
S. Buranasinsup, A. Wiratsudakul, B. Chantong et al. Journal of Infection and Public Health 16 (2023) 194–202
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S. Buranasinsup, A. Wiratsudakul, B. Chantong et al. Journal of Infection and Public Health 16 (2023) 194–202
UK), and citrate utilization tests (Oxoid, UK) were used to identify Germany), and 1 µg of DNA template. The thermal cycler Flexcycler2
E. coli. (Analytik Jena, Germany) was used to performed the amplification .
The temperature profile was as follows: DNA denaturation at 95 °C
Antimicrobial susceptibility testing for 30 s, followed by annealing at the specific temperature for each
primer set for 30 s, extension at 72 °C for 60 s, and a final extension
Antimicrobial susceptibility testing and interpretation were at 72 °C for 10 min. Each run included both - positive and negative
performed using the minimum inhibitory concentration (MIC) controls. Positive control isolates for the detection of antimicrobial-
method according to the Clinical and Laboratory Standards Institute resistance genes were obtained from previous studies [30]. The
M100 [27] and VET01S [28] for samples isolated from humans and amplicons were analyzed using 1.5% agarose gel electrophoresis and
animals, respectively. The breakpoint for interpretation according to stained with SYBR-safe (Invitrogen, USA). The DNA bands were ob
CLSI guidelines is shown in Supplement Table 1. served under the UV transilluminator (UVP Bioimaging system, In
All E. coli isolates were examined for susceptibility to amikacin, vitrogen, USA).
gentamicin, ampicillin, amoxicillin–clavulanic acid, piperacillin/ta
zobactam, cephalexin, cefazolin, cefpodoxime, cefovecin, ceftazi Network analysis
dime, imipenem, enrofloxacin, marbofloxacin, orbifloxacin,
pradofloxacin, trimethoprim/sulfamethoxazole, chloramphenicol, An undirected two-mode weighted network was constructed.
doxycycline, and tetracycline using the Sensititre™ Companion One mode was the antibiotics, and the other mode was the subjects
Animal Gram Negative COMPGN1F Vet AST Plate (Thermo Fisher involved, which included humans, cats, and dogs. However, in this
Scientific, USA). Antimicrobial susceptibility testing was performed analysis, both modes were treated equally, with a node representing
according to the manufacturer’s protocol. In brief, E. coli isolates either an antibiotic or a subject and an edge representing the re
were diluted to 0.5 McFarland standard, inoculated on the AST plate, sistance between each pair of subjects and antibiotics. The node was
and incubated at 35 °C for 18–24 h. The MIC was determined after weighted based on degree centrality, which is defined as the number
adding resazurin dye (Sigma-Aldrich, Germany). Escherichia coli of immediate contacts of the node [31], and the edge was weighted
isolates from humans were further analyzed for susceptibility to based on the relative rate of resistance. All network analysis and
norfloxacin (Sigma-Aldrich, Germany) and ciprofloxacin (Sigma- visualization studies were performed using the package ‘igraph’ in
Aldrich, Germany). The susceptibility to imipenem, trimethoprim/ the R program.
sulfamethoxazole, chloramphenicol, doxycycline, and tetracycline in
animals was interpreted as per CLSI M100 [27]. Escherichia coli ATTC®
25922 was used as the control strain. Statistical analysis
Multiple antibiotic resistance (MAR) index calculation Descriptive statistics, including the percentage of isolations and
percentage of resistance, were used to describe the results. The an
The MAR index was calculated and interpreted using the for timicrobial resistance of the bacteria was compared using the chi-
mula: a/b, where ‘a’ represents the number of antibiotics to which an square test to determine whether there were differences in regions
isolate was resistant, and ‘b’ represents the total number of anti and host categories. Host categories (veterinarian, veterinary assis
biotics tested [29]. tant, pet owners, dog, and cat) that affected the occurrence of AMR
were also compared using Fisher’s exact test and chi-square test. The
cut-off for the statistical significance was set at a P-value of < 0.05.
Detection of antimicrobial resistance genes
Table 1
Characteristics and distribution of subjects across sampling locations.
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S. Buranasinsup, A. Wiratsudakul, B. Chantong et al. Journal of Infection and Public Health 16 (2023) 194–202
Table 2
The occurrence of E. coli was analyzed among different subject groups and regions, and the results are reported as percentages.
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S. Buranasinsup, A. Wiratsudakul, B. Chantong et al. Journal of Infection and Public Health 16 (2023) 194–202
Fig. 3. Profile of antimicrobial resistance in E. coli isolates from pets and humans. a) antimicrobial resistance in E. coli from pets. b) antimicrobial resistance in E. coli from humans.
was significantly different between humans and animals, and only transfer between humans and animals [9,33,34]. The emergence and
two antibiotics demonstrated a significant difference between dogs spread of E. coli strains carrying AMR genes in people, animals, and
and cats. No differences were identified among human groups. their environments are major global concerns [11,15,16,35]. Under
standing the distribution of bacteria and their susceptibility to an
Discussion timicrobial drugs is critical for antimicrobial resistance monitoring
[36]. The presence of resistant E. coli in pets and humans may be
The increasing proximity between humans and companion ani linked to the spread of drug-resistance genes within the same ha
mals has raised concerns regarding the significant risk of AMR bitats [24,34,37]. Therefore, this study aimed to determine the
Ciprofloxacin Norfloxacin
Ampicillin
Cefazolin
Tetracycline
Ceftaxidime Imipenem
Doxycycline
Cepodoxime
Human
Gentamicin
Trimethoprim/Sulfamethoxazole
Dog Cat
Amoxicillin−clavulanic acid
Chloramphenicol
Orbifloxacin
Cephalexcin
Enrofloxacin
Amikacin Human
Pradofloxacin
Dog
Cefovecin
Cat
Piperacillin/Tazobactam Antibiotic
Marbofloxacin
Fig. 4. Networks of antimicrobial resistance in E. coli among humans, dogs, and cats in veterinary care settings. The size of the nodes denotes the proportional degree centrality of
the nodes, the width of the edges denotes the relative rate of resistance, and the color of the nodes and edges represents animal species and antimicrobials.
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S. Buranasinsup, A. Wiratsudakul, B. Chantong et al. Journal of Infection and Public Health 16 (2023) 194–202
Fig. 5. Multiple antibiotic resistance (MAR) index of E. coli isolated from dogs, cats, veterinarians, veterinary assistants, and pet owners.
pattern of antimicrobial susceptibility of E. coli in dogs and cats as resistance to ampicillin and tetracycline, and all isolates from cats
well as veterinarians, veterinarian assistants, and pet owners at were resistant to ampicillin [4,11,17,39,41]. In this study, the pro
private veterinary hospitals and clinics and determine their anti portions of E. coli from dogs and cats with an MAR index of ≥ 0.2
microbial resistance genes. The minimum inhibitory concentrations were 34.92% and 62.12%, respectively, which were lower than those
of E. coli against 21 antimicrobial drugs were investigated. In addi observed in China [42]. The frequency of E. coli isolated from veter
tion, the 12 antimicrobial resistance genes (blaCTX-M, blaTEM, blaSHV, inarians with an MAR index of ≥ 0.2 was relatively high, at 61.11%.
aac(3)-IIa, aac(6’)-Ib, tetA, tetB, gyrA, dfrA5, sul1, sul2 and cmlA) were According to previous reports from Austria and China, companion
determined. animals might act as overflow carriers for multidrug-resistant E. coli
In this study, E. coli was isolated from the rectal swabs of healthy in humans [43,44]. Our findings suggest a critical need for increased
dogs and cats, and also from skin and ear infection lesions. The awareness of the possibility of multidrug-resistant E. coli reservoirs
prevalence of E. coli isolated from pets was consistent with earlier in pets and veterinarians that may be shared during a visit or ad
findings, in which it was 7–43% in dogs and 5–45% in cats mission to veterinary facilities. Our observations, although of con
[11,17,38–40]. In this study, the prevalence of E. coli in people who cern, also provide an opportunity for proactive action. The need for
were in contact with pets was higher than that in previous studies. optimal infection control measures for veterinary practitioners in
According to Jung et al., the prevalence of E. coli was in the range of Thailand is clear, and the time to act is now. The absence of specific
0%-6% in veterinary staff, 41.11% in veterinarians, and 14.63% in ve infection control guidelines in small animal practice in Thailand
terinary assistants [39,40]. We found that E. coli isolates from cats should not stall the progress. Instead, it emphasizes the urgency for
were 100% resistant to ampicillin and amoxicillin–clavulanic acid, the country to develop and implement comprehensive infection
whereas those from dogs were most frequently resistant to tetra control protocols by leveraging international guidelines [45–47] and
cycline (42.33%). Escherichia coli from people was most frequently integrating them into the local context and existing national stra
resistant to tetracycline, sulfamethoxazole/trimethoprim, and dox tegic plan on AMR [48].
ycycline. Similar to previous findings, E. coli isolated from humans The antimicrobial resistance genes found most commonly in this
and companion animals in this study exhibited high rates of study were bla and tet genes, which correlated with the results of the
Table 3
Antimicrobial resistance genes of E. coli isolated from dogs, cats, veterinarians, veterinary assistants, and pet owners.
Drugs classes Genes Dogs N = 189 (%) Cats N = 132 (%) Veterinarians N = 18 (%) Veterinary assistants N = 11 (%) Pet owners N = 42 (%)
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S. Buranasinsup, A. Wiratsudakul, B. Chantong et al. Journal of Infection and Public Health 16 (2023) 194–202
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