Plant Biotechnology J
Plant Biotechnology J
Plant Biotechnology J
13038
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd. 1069
This is an open access article under the terms of the Creative Commons Attribution License, which permits use,
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1070 Xiaoqing Shi et al.
Plants are excellent biofactories for producing proteins and important to target these bioactive proteins to the extracellular
other metabolites of interest for research, pharma and industry. space, since their toxic effects prevent them from accumulating in
They are fueled by sunlight, are free from human pathogens, and intracellular compartments. Moreover, by accumulating the AFPs
compared to other systems, production can be scaled up easily. in the extracellular fluids, downstream purification is simpler. We
Many biotechnological tools have been developed for molecular show also that the recombinant AFPs produced by the new
farming, and those derived from plant viruses are prominent system have exactly the same activity as their native counterparts
among them (Hefferon, 2017). Higher plants host a remarkable of fungal origin. Finally, we demonstrate that plant extracellular
diversity of viruses with different genomes and strategies for fluids containing the Penicillium digitatum AfpB can protect
genome replication and expression. However, they all have small tomato plants from the grey mold disease caused by Botrytis
genomes, and thus have limited capacity to harbor genetic cinerea.
information. Despite this limitation, plant viruses can complete
complex and tightly regulated infectious processes in their host Results
plants. Definitively, evolution has favored small and simple, but
A new TMV-based vector system in which ORFs of
still powerful, genetic elements in plant virus genomes, a wealthy
interest are inserted using the Gibson assembly reaction
source of parts for plant biotechnology and synthetic biology.
A pioneering example of a plant virus transformed into a As a first step toward a new TMV-derived vector system for plant
biotechnological tool is Tobacco mosaic virus (TMV). This is a plus biotechnology that uses the Gibson assembly reaction to insert
strand RNA virus of genus Tobamovirus, within the family the ORFs of interest, we constructed a TMV infectious clone that
Virgaviridae (Ishibashi and Ishikawa, 2016; Knapp and Lewan- efficiently infects plants when delivered by agroinoculation
dowski, 2001; Scholthof, 2004). The genomic RNA is encapsi- (pGTMV; Figures S1 and S2; Addgene plasmid # 118755). We
dated by 2130 units of the viral coat protein (CP) into rigid, helical then transferred a fragment of the TMV cDNA containing the
rod-shape virions of about 18 nm diameter, and 300-310 nm entire CP ORF (from A5431 to T6278) to a minimal cloning
length. TMV RNA encodes four proteins: two 50 -end proximal vector. In the resulting plasmid, the TMV cDNA was flanked by
overlapping 126 and 183 kDa replication proteins that are recognition sites for the type-IIS restriction enzyme BsaI. The
alternatively produced through a ribosomal readthrough mech- plasmid was manipulated to mutagenize the ATG initiation
anism, the 30 kDa movement protein (MP), and the 30 -end codon of the TMV CP into AGA (positions 5712-5714), and to
proximal 17.5 kDa CP. The two replication proteins are expressed replace most of the CP ORF (from T5757 to T6176) by a linker
from the genomic RNA, while the MP and CP are expressed from consisting of the recognition sites for two unique restriction
30 co-terminal subgenomic RNAs. The TMV genome also contains enzymes (AgeI and XhoI) and the LacZ blue-white selection
50 - and 30 -untranslated regions that are important for virus marker. The resulting minimal intermediate plasmid (pMTMVi-N;
translation and replication (Chujo et al., 2015). Addgene plasmid # 118756) is represented in Figure 1 (upper
A key property of TMV is the rapid accumulation of large part) and its exact sequence in Figure S2. This small plasmid
amounts of the viral CP in infected plant tissues. A combination of (2376 bp) allows us to easily and efficiently insert the ORFs of
knowledge and a trial-and-error approach led to the construction interest using the Gibson assembly reaction (Gibson et al.,
of TMV-derived vectors (Dawson, 2014) such as TB-2 (Donson 2009). The option of assembling two or more DNA fragments in
et al., 1991; Kearney et al., 1993), or 30B (Shivprasad et al., a single reaction allows us to fuse any desired peptide tag or
1999), which allow to express a foreign open reading frame (ORF) protein moiety to the recombinant protein of interest. Once the
under the control of the viral CP promoter; in these cases, cDNA for the recombinant protein is inserted into pMTMVi-N,
encapsidation is achieved by inserting into the recombinant virus the manipulated TMV genome fragment can be transferred into
an ORF encoding the CP of a different tobamovirus. Other vectors the TMV infectious clone (pGTMV) using a second Gibson
such as the TMV RNA-based overexpression (TRBO) vector, in assembly reaction (Figure 1, upper part). This requires that
which most of the viral CP is replaced by the ORF of interest, pGTMV be digested with restriction enzymes NcoI and Pfl23II,
produce large amounts of recombinant proteins but are incapable which have unique recognition sites in this plasmid. There are
of spreading systemically (Lindbo, 2007). Improvements in TMV- two options for generating the insert from the pMTMVi-N
based vectors have also focused on increasing the efficiency of derivatives, the easiest being to digest the plasmid with BsaI.
establishing the infection foci and of cloning the genes of However, if the recombinant cDNA contains BsaI sites, the
interest. One of the most popular systems uses DNA modules manipulated TMV DNA fragment can be produced by poly-
delivered by Agrobacterium tumefaciens and assembled in vivo by merase chain reaction (PCR) using primers PI and PII (Table S1),
a site-specific recombinase to produce the TMV-derived vector which flank the recognition sites of NcoI and Pfl23II.
(Marillonnet et al., 2004). This de-constructed system was further In pMTMVi-N derivatives, most of the TMV CP is replaced by
improved by introducing silent nucleotide substitutions and the ORF for the recombinant protein, such that the recombinant
multiple introns into the TMV coding sequences, in order to viruses will be unable to move systemically in infected plants. To
increase infectivity (Marillonnet et al., 2005). Another improved obtain recombinant TMV clones that can move within the plant,
series of TMV-derived vectors uses Gateway cloning to facilitate we constructed a new minimal intermediate plasmid by transfer-
insertion of the recombinant ORFs, which can also be fused to a ring the fragment in the pGTMV from A5431 in TMV cDNA to
broad series of epitope tags and fluorescent proteins (Kagale G62 in the delta ribozyme cDNA. We again mutagenized the
et al., 2012). TMV CP ATG to AGA and replaced most of the TMV CP with the
Here, we report the development of a new TMV-derived vector AgeI-LacZ-XhoI linker, as above. In this case, we replaced the final
system that allows quick and easy cloning of the ORFs of interest 30 nt of the TMV genome (from A6366 to the end) with the 30
using the Gibson assembly reaction (Gibson et al., 2009). We end of a Tomato mosaic virus (ToMV) infectious clone (from
describe how we have used this system to produce large amounts G5537 to the end). This fragment includes the ToMV CP
of AFPs in Nicotiana benthamiana plants. We show that it is promoter, CP ORF and 30 UTR, and provides an alternative
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080
14677652, 2019, 6, Downloaded from https://onlinelibrary.wiley.com/doi/10.1111/pbi.13038 by Cochrane Chile, Wiley Online Library on [15/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
A new viral system for efficient AFP production 1071
Figure 1 The TMV vector system, which allows Gibson assembly of the ORF of interest. Schematic representation of intermediate entry plasmids pMTMVi-
N and pMTMVi-M, and the Gibson assembly reactions that allow insertion of the gene of interest (GoI) into pGTMV to produce the binary plasmids that will
express the recombinant viruses (pGTMVn-GoI and pGTMVm-GoI). Ori pUC and Ori pSa, replication origins; AmpR and KanR, ampicillin and kanamycin
resistance selection markers; LacZ, fragment of E. coli b-galactosidase, which allows blue–white screening in the presence of X-gal; TMV and 30 ToMV, viral
cDNAs; LB and RB, left and right borders of the Agrobacterium. tumefaciens transfer DNA; P35S and T35S, Cauliflower mosaic virus (CaMV) 35S promoter
and terminator; d, ribozyme.
tobamovirus CP to encapsidate the recombinant virus, which antifungal protein, with inhibitory concentrations up to one order
allows it to move systemically (Shivprasad et al., 1999). This of magnitude lower than other AFPs (Garrigues et al., 2017).
second minimal TMV intermediate plasmid, called pMTMVi-M Therefore, there is a great interest in obtaining large amounts of
(Addgene plasmid # 118757), is shown in Figure 1 (lower part, AfpB, so we assessed this possibility using our new TMV vector
full sequence in Figure S2). In pMTMVi-M, the M indicates system. We designed two different constructs to target this
movement, whereas the N in pMTMVi-N indicates nonmovement. protein to two different subcellular compartments, namely
The cDNA corresponding to the recombinant protein can be apoplast and endoplasmic reticulum (ER). Compartmentalizing
inserted into the AgeI-XhoI digested plasmid using the Gibson antimicrobial peptides in plant cells is known to favor their
assembly reaction, as previously described. The manipulated TMV accumulation by protecting them from host proteases and
fragment can also be reintegrated into pGTMV, using the Gibson avoiding their toxic effects on the host cells (Bundo et al.,
assembly reaction with a BsaI-digested insert, although in this 2014; Coca et al., 2006; Montesinos et al., 2016). To target AfpB
case the destination plasmid (pGTMV) must be digested with NcoI to the apoplast or ER, we added the signal peptide of the tobacco
and CpoI. If the cDNA corresponding to the recombinant protein AP24 protein (XP_009782398.1) to the amino terminus of the
contains BsaI sites, the insert can also be produced by PCR using mature AfpB protein (Figure 2a). This signal peptide allows the
primers PI and PIII (Table S1), which flank the NcoI and CpoI protein to enter the secretory pathway toward the extracellular
recognition sites. space. In the second construct, we added an additional KDEL
We confirmed that the new TMV vector system performed sequence to the carboxyl terminus of the protein, facilitating
correctly by cloning the cDNA of reporter green fluorescent retention inside the ER. We then expressed the corresponding
protein (GFP) into both the pMTMVi-N and pMTMVi-M interme- recombinant viruses (TMVDCP-AfpB and TMVDCP-AfpBKDEL;
diate plasmids, transferring the manipulated TMV fragments to Figure S4) in N. benthamiana leaves via infiltration with A. tume-
pGTMV, and infiltrating N. benthamiana plants (Figure S3, faciens cultures. We observed that leaves agroinfiltrated with
sequences in Figure S4). AfpB constructs were damaged, particularly those with the
construct designed for AfpB accumulation in ER (Figure 2b). In
Production of the antifungal protein AfpB in leaf
contrast, leaves agroinfiltrated with a GFP control (TMVDCP-GFP)
apoplasts of N. benthamiana plants
showed a healthy green appearance, similar to that of the mock-
AfpB is an AFP whose gene was identified in the genome of the agroinfiltrated leaves (Figure 2b). This suggests that the negative
postharvest phytopathogenic fungus P. digitatum but that, unlike effects might be due to afpB expression rather than to TMVDCP
other AFPs, is not naturally produced by the fungus (Garrigues infection.
et al., 2016). In a recent study, P. digitatum was genetically To confirm that AfpB was produced in N. benthamiana leaves,
modified to produce AfpB and was found to be a highly active we extracted the apoplastic and total protein content, and
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080
14677652, 2019, 6, Downloaded from https://onlinelibrary.wiley.com/doi/10.1111/pbi.13038 by Cochrane Chile, Wiley Online Library on [15/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
1072 Xiaoqing Shi et al.
analysed them by SDS-PAGE. Coomassie blue staining showed protein extracts did not detect AfpB in leaves inoculated with
the accumulation of a small protein with same apparent TMVDCP-AfpBKDEL, although the protein was detected in
molecular weight to that of the P. digitatum AfpB (6.46 kDa) in TMVDCP-AfpB leaves (Figure 2e). These observations indicate
the extracellular fluids (ECFs) of TMVDCP-AfpB agroinfiltrated that AfpB did not accumulate in the ER vesicles of N. ben-
leaves, but which was absent in leaves that had been agroinfil- thamiana leaf cells, probably due to toxic effects. By comparing
trated with TMVDCP-GFP (Figure 2c). This protein was immun- with the known amounts of AfpB produced by P. digitatum,
odetected with specific anti-PAFB antibodies by Western blot we estimated that the accumulation of AfpB in the ECFs was
analysis (Huber et al., 2018) (Figure 2d), thus demonstrating that ~225 37 lg per gram of N. benthamiana leaves. Thus, the
AfpB was produced in N. benthamiana leaves when targeted to recombinant protein accounts for more than 60% of the total
the apoplastic space. ECF protein.
We observed no differential bands in total acid protein
Efficient production of proteins of fungal origin
extracts from leaves agroinfiltrated with TMVDCP-AfpBKDEL
targeted to different subcellular compartments
and mock inoculated leaves (Figure 2e). In contrast, GFP was
observed clearly in the total protein extracts from TMVDCP-GFP Since AfpB was not produced when targeted to the ER, we
leaves (Figure 2e). Moreover, Western blot analysis of total acid assessed the efficiency of the TMV-based expression system using
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080
14677652, 2019, 6, Downloaded from https://onlinelibrary.wiley.com/doi/10.1111/pbi.13038 by Cochrane Chile, Wiley Online Library on [15/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
A new viral system for efficient AFP production 1073
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080
14677652, 2019, 6, Downloaded from https://onlinelibrary.wiley.com/doi/10.1111/pbi.13038 by Cochrane Chile, Wiley Online Library on [15/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
1074 Xiaoqing Shi et al.
characterized AFP from Aspergillus giganteus (Campos-Olivas apoplasts of infiltrated leaves (Figure 5b). By comparison to
et al., 1995; Meyer, 2008; Vila et al., 2001). Based on the results known amounts of the fungal protein, we estimated the amount
obtained with the AfpB, we decided to directly target AgAFP of protein produced to be around 196 72 lg per gram of leaf
accumulation to the apoplastic space. We generated the fresh weight. Moreover, ECFs enriched in AgAFP showed
TMVDCP-AgAFP construct containing the sequence encoding antifungal activity against P. digitatum (Figure 5c). This activity
the AP24 secretion signal peptide and the mature AgAFP seems to be at least one order of magnitude lower than that of
(Figure S4). Nicotiana benthamiana leaves infiltrated with this the ECFs containing AfpB (Figure 4c), in agreement with the high
construct had a similar appearance to the mock infiltrated leaves activity reported for AfpB (Garrigues et al., 2017). These results,
and leaves inoculated with the TMVDCP-GFP control (Figure 5a). obtained with a different AFP, indicate that our TMV-based
We analysed ECFs from N. benthamiana leaves by Western blot system can be considered a general platform for producing
using the specific antibodies against AgAFP, previously described antifungal proteins in biofactory plants.
(Coca et al., 2004), and found that AgAFP accumulated in the
Optimization of the AfpB production method for scaling
the process
Syringe inoculation of plants is a time-consuming and labor intense
process, and thus not suitable for large-scale production of AFPs.
Figure 4 Equivalence of antifungal activity for the in planta-and in Figure 5 Production of Aspergillus giganteus AFP (AgAFP) in the
fungus-produced AfpB. (a) Purification of AfpB from Nicotiana apoplast of Nicotiana benthamiana leaves. (a) Appearance of
benthamiana leaves by cationic exchange chromatography. Coomassie- N. benthamiana leaves 7 days after agroinoculation with the indicated
blue stained tricine-SDS-PAGE gel loaded with equivalent volumes of constructs. (b) Analysis of AgAFP accumulation in the extracellular fluid
extracelular fluid (ECF), flow-through (FT) and different eluted (ECF) from two independent plants (1 and 2) by Western blot
chromatographic fractions (1, 5, 13-16), and 3.5 lg of Penicillium immunodetection using anti-AFP-specific antibodies. Purified AgAFP
digitatum purified protein (AfpB[Pd]). (b-c) In vitro inhibitory activity of (250 ng) from A. giganteus cultures was run in parallel as a control (AFP
AfpB against P. digitatum fungus. Dose–response curves comparing the [Ag]). Molecular weight markers are shown in kDa on the left. (c)
fungal growth inhibitory activity of the purified AfpB[Pd] and Antifungal activity of ECFs containing AFP[Nb] against Penicillium
N. benthamiana AfpB (AfpB[Nb]) (b), or with ECFs from leaves of digitatum. Dose–response curves of the fungal growth inhibitory activity
N. benthamiana producing AfpB (AfpB[Nb] ECF) or GFP (GFP[Nb] ECF) (c). of AFP[Nb] ECF in comparison to GFP[Nb] ECF. Data shown represent the
Data shown represent the mean SD of three biological replicates after mean SD of three biological replicates after 72 h of incubation with the
72 h of incubation with the indicated amounts of AfpB. indicated amounts of AFP.
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080
14677652, 2019, 6, Downloaded from https://onlinelibrary.wiley.com/doi/10.1111/pbi.13038 by Cochrane Chile, Wiley Online Library on [15/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
A new viral system for efficient AFP production 1075
We evaluated simple methods for agroinoculation that could important economic losses (Dean et al., 2012). AfpB produced
facilitate and speed up the AFP production process. These methods by P. digitatum has in vitro inhibitory activity against B. cinerea
included vacuum infiltration, which can be done on a large scale with a MIC (minimal inhibitory concentration) value of 12.5 lM
with robotics, and simpler spray applications, as reported previously (Garrigues et al., 2017). We deposited drops containing fungal
(Hahn et al., 2015). To monitor transfection efficiency easily, we conidia on tomato leaves along with N. benthamiana ECF
used the construct TMVDCP-GFP to produce GFP that can be containing 10 lM AfpB, as well as, drops with conidia along
visualized under UV light. In syringe- or vacuum-agroinfiltrated with the same concentration of pure AfpB produced by
leaves, we observed a strong and homogeneous distribution of GFP P. digitatum, and control drops with conidia along with water
fluorescence in the leaves at 7 days, while in sprayed leaves we or ECF from GFP producing plants. Where control drops were
could distinguish separate GFP foci (Figure 6a, upper panels). deposited, infection symptoms were clearly visible at 4 days
However, these GFP foci enlarged over time and merged at 12 days postinoculation (dpi); whereas where drops containing AfpB
(Figure 6a, lower panels). These observations indicate that all three were deposited lesions were clearly smaller (Figure 7a). By
methods can efficiently produce GFP, although the spray applica- quantifying lesion size using image analysis, we observed a
tion method requires a longer timeframe. We also tested these statistically significant decrease in the damaged area in the
methods for AfpB production, and found that ECFs from agroinoc- presence of AfpB (Figure 7b). These results demonstrate that
ulated leaves showed similar AfpB accumulation at 12 days for all AfpB protects against B. cinerea infection, both for crude ECFs
three methods (Figure 6b). These results indicate that the much containing AfpB (AfpB[Nb]ECF), and for AfpB purified from
simpler spray application can be implemented for easy and fungal cultures (AfpB[Pd]). Even more interesting, the ECF
inexpensive large-scale AfpB production. extracts containing AfpB showed the same protective efficacy.
Finally, we evaluated the stability of the in planta accumulated Therefore, depending on the intended use for the AfpB
AfpB during storage as dried material, which could allow producers protein, it may not be necessary to include a downstream
to uncouple biomass production from processing. Comparing AfpB purification process. This would reduce considerably the costs
accumulation in dried leaves with that in immediately frozen leaves, of production and biotechnological application of this antifun-
we observed that AfpB remains stable at least for 2 months when gal biomolecule.
stored in dried leaves (Figure 6c). Therefore, AfpB can be manu-
factured in N. benthamiana without the need for immediate
Discussion
processing, and can be stored in dried leaves.
In this study, we show that N. benthamiana plants are an
Protection of tomato plants against Botrytis grey mold
excellent biofactory for producing antifungal proteins of fungal
by in planta-produced AfpB
origin when transiently expressed using a TMV-derived vector.
Finally, we assessed the effectiveness of in planta-produced The process we have developed is fast and produces high yields of
AfpB in plant protection assays. For that, plant protein extracts antifungal proteins, which, in addition, are bioactive in the crude
containing AfpB were evaluated against the broad-spectrum ECF, or can be easily purified from crude extracts. Importantly,
fungal pathogen B. cinerea. This fungus causes gray mold in the recombinant proteins produced in plants have exactly the
plants and fresh fruits and vegetables, and is responsible for same antifungal activity as their native counterparts purified from
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080
14677652, 2019, 6, Downloaded from https://onlinelibrary.wiley.com/doi/10.1111/pbi.13038 by Cochrane Chile, Wiley Online Library on [15/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
1076 Xiaoqing Shi et al.
fungi. This is a remarkable result because these small cysteine-rich to the scientific community. Here, starting with an infectious
proteins have been shown to be difficult to produce in a soluble, clone of a TMV vulgare strain (GenBank accession number
correctly folded conformation in bacterial systems (Kiedzierska MK087763) and a small, optimized binary vector (Thole et al.,
et al., 2008; Rosano and Ceccarelli, 2014). They only had been 2007), we constructed the plasmid pGTMV, which mediates the
successfully produced as active proteins in Pichia pastori at fast and efficient infection of N. benthamiana plants after
relatively low yields (Garrigues et al., 2017; Lopez-Garcıa et al., infiltration with transformed A. tumefaciens. Marillonnet et al.
2010; Viragh et al., 2014), and at better yields in filamentous (2005) suggested that plant agroinoculation with TMV is an
fungi (Garrigues et al., 2017; Huber et al., 2018; Sonderegger inefficient process, attributed to abnormal RNA processing of the
et al., 2016; To th et al., 2018). Although plant and fungal viral genome after transcription in the cellular nucleus, a step that
systems are similar in terms of yield and activity, the transient is certainly alien to the natural TMV replication cycle. However,
production of AFPs in plants represents an attractive alternative as our experimental results demonstrate high infectivity, even at low
sustainable bioproduction factories fueled by sunlight and easily densities of A. tumefaciens (Figure S5). The low infectivity
scalable. The developments reported here expand the available previously reported in agroinoculation experiments may have
alternatives for the exploitation of antifungal proteins and other been due to the use of inefficient genetic elements such as
cysteine-rich proteins such as UP, which was produced to promoters and ribozymes, or the use of large, unstable binary
extremely high yields. plasmids.
To produce these antifungal proteins in plants, we first Several plant-based systems have been used to produce small
developed a new TMV-based vector system. The main reason proteins and peptides with antimicrobial activity. While challeng-
for developing another TMV vector was to exploit the Gibson ing due to the physicochemical properties and toxicity of many of
assembly reaction to insert the ORFs of interest into the viral these peptides, some of these platforms successfully produce
genome. The Gibson assembly reaction, which is extremely AMPs. These platforms include leaf chloroplasts (Lee et al., 2011),
efficient for inserting DNA fragments into plasmids, provides rice seeds (Bundo et al., 2014; Montesinos et al., 2016, 2017),
unprecedented yields when assembling several DNA fragments barley seeds (Hol askova et al., 2018) and hairy roots (Chahardoli
into a plasmid in a single step, provided these fragments contain et al., 2018). However, the yields reported when using these
the appropriate overlapping ends (Gibson et al., 2009). This systems were much lower than the AFP yield achieved in
reaction facilitates the insertion of tags and the fusion of protein N. benthamiana using the TMV-derived system reported here.
moieties. Moreover, we feel that modular TMV-derived systems While our estimated yield of AfpB was approximately 250 lg per
that re-assemble in vivo (Marillonnet et al., 2004, 2005) are gram of fresh N. benthamiana leaf tissue, the reported yields for
unnecessarily complex, and moreover they are not freely available Retrocyclin-101 and Protegrin-1 were ~5 and 8 lg/g of tobacco
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080
14677652, 2019, 6, Downloaded from https://onlinelibrary.wiley.com/doi/10.1111/pbi.13038 by Cochrane Chile, Wiley Online Library on [15/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
A new viral system for efficient AFP production 1077
respectively (Lee et al., 2011), those for Cecropin A were ~40 lg/ conveniently stored before purification. There are clear advantages
g of rice seeds (Montesinos et al., 2016), those for LL37 were to decoupling these two processes, such as avoiding immediate
~0.55 lg/g of barley seeds (Hol askov
a et al., 2018), and those for processing after harvesting or otherwise freezing the plant mate-
Lactoferrin chimera were ~4.8 lg/g of tobacco hairy roots rial, with their associated production costs. These developments
(Chahardoli et al., 2018). In addition, all of these plant-based facilitate large-scale production of these proteins in an easy, fast
production systems are based on stable transformation, which cost-efficient and safe manner. In our TMV vector, the viral CP is
makes the process more complex and time consuming. Other replaced with the AFP genes, so no virus particles are created, and
transient expression systems have also been used for AMP therefore there is no risk of viral dissemination in the environment.
production, although with lower yields than those we achieved Also, the afp genes are not incorporated into the plant genome so
for AFPs (Patin ~o-Rodrıguez et al., 2013; Zeitler et al., 2013). they did not become heritable traits. Nonetheless, industrial
Zeitler et al. (2013) used a TMV full-length virus strategy, to production would require contained greenhouse conditions to
produce recombinant linear AMP SP1-1 at a yield of ~25 lg/g of avoid the release of the genetically modified A. tumefaciens strains
N. benthamiana leaf tissue, while Patin ~o-Rodrıguez et al. (2013) and TMV clones. The green AFP manufacturing process developed
used the MagnICON system to produce Protegrin-1 at lower here could contribute to bring these proteins into the market for
amounts than for the AFPs, and without providing quantitative practical use as antifungals. To support these applications, we also
data. In any case, even our yield of 250 lg/g for AfpB is far from demonstrated the effectiveness of plant ECF containing AfpB in
the 4 mg/g achieved for other proteins, such as GFP or the protecting tomato plants against Botrytis grey mold. Botrytis
P. digitatum unknown protein UP, which has no predicted cinerea is one of the top ten fungal phytopathogens, causing
antimicrobial activity. This highlights the difficulties associated important economic losses due to the broad range of hosts, and
with producing bioactive peptides in biofactory plants. that damage that can occur during the production and posthar-
Importantly, our results with AfpB show that the subcellular vesting of vegetables, fruits and flowers (Dean et al., 2012).
localization is relevant to achieve high accumulations of bioactive Fungicides are the commonly used method for controlling
peptides in plant tissues. AfpB accumulates at high levels when B. cinerea, and botryticides represent more than 10% of the
targeted to the extracellular space, whereas intracellular accu- world’s fungicide market. This work supports the use of green AfpB
mulation is hindered, probably by toxic effects. This observation as an environment friendly and sustainable alternative to chemical
was somehow unexpected because AFP has not previously been fungicides.
found to be toxic in plant cells (Coca et al., 2004; Girgi et al.,
2006; Moreno et al., 2006, 2005; Oldach et al., 2001; Vila et al., Experimental procedures
2001). However, these previous studies used external application
Plasmid construction
or extracellular localization of AFPs in plant tissues, so it is possible
that AFPs interfere with plant cell functions once inside the cells. To build pGTMV, pMTMVi-N and pMTMVi-M (Addgene plasmids
In contrast, the other fungal protein produced in our experiments, # 118755, 118756 and 118757, respectively), PCR amplification
UP, which has no predicted antifungal activity, accumulated to reactions were performed using the Phusion high-fidelity DNA
similarly high intracellular and extracellular levels. These observa- polymerase (Thermo Scientific) in HF buffer. The Gibson assembly
tions reveal the importance of targeting protein accumulation reactions were performed using the NEBuilder HiFi DNA assembly
depending on the characteristics and activity of the recombinant master mix (New England Biolabs). The NEBuilder assembly tool
protein. (https://nebuilder.neb.com/; New England Biolabs) was used to
Additionally, apoplastic targeting of AFPs in plant tissues design the primers. Escherichia coli DH5a were electroporated
greatly facilitates their purification. As observed in our work, an with the products of the Gibson assembly reaction. The full
extremely simple purification scheme is required to purify AFPs sequence of these plasmids, which was confirmed experimentally
from N. benthamiana tissue. ECFs can be obtained easily by by nucleotide sequencing, is shown in Figure S2. To build
vacuum infiltration of harvested leaves and sieving, yielding highly plasmids expressing the various recombinant TMV clones used in
AFP-rich solutions, in which more than half of the protein content this work, the intermediate plasmids pMTMVi-N or pMTMVi-M
is AFPs. Starting with these ECFs, a single chromatographic step is were digested with AgeI and XhoI (Thermo Scientific), and the
required to purify these small proteins to homogeneity. Even DNA fragments corresponding to the ORFs of interest were
better, our results show that ECFs can be used directly as obtained by PCR and assembled using the Gibson reaction. Next,
antifungals with no further purification. Thus, the downstream the manipulated fragment of the TMV cDNA was excised from
processing of recombinant AFPs can be greatly reduced and, the resulting plasmids by digestion with BsaI (New England
consequently, the overall manufacturing costs. Biolabs), and assembled with the large fragment of pGTMV
In addition to leaf infiltration, we have also shown that the TMV- digested with NcoI-Pfl23II (pMTMVi-N derivatives) or NcoI-CpoI
derived system can be used to produce AFPs by spraying N. ben- (pMTMVi-M derivatives) (Thermo Scientific). The full sequence of
thamiana tissues with A. tumefaciens suspensions. This simplifica- all recombinant viruses is shown in Figure S4.
tion of the inoculation process was previously reported for the
Agroinoculation of N. benthamiana leaves
MagnICON system (Hahn et al., 2015), and we have successfully
implemented it for our new TMV-derived system. We demonstrate Agrobacterium tumefaciens GV3101 carrying the helper plas-
that the AFP yields achieved after 12 days by spraying leaves are mid pSoup (Hellens et al., 2000) was transformed with
similar to those achieved after 7 days by vacuum or syringe plasmids to express the different TMV recombinant clones.
infiltration, although spraying is a much simpler inoculation For plant agroinoculation, overnight cultures of A. tumefaciens
strategy. Moreover, we observed that AFPs remain stable in stored were diluted in induction medium (10 mM MES, 10 mM MgCl2,
N. benthamiana leaves for at least 2 months at room temperature. 200 lM acetosyringone) at the appropriate optical density at
This observation suggests that the AFP production process can be 600 nm (OD600), incubated for 3 h at room temperature, and
decoupled from the purification process, and leaves can be infiltrated using a needle-less syringe (0.5 OD600) or sprayed on
ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080
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1078 Xiaoqing Shi et al.
the underside of leaves using an aerograph at 2 atmospheres apoplastic fluids were dialysed against water and used at the
of pressure (1.0 OD600). Importantly, the surfactant Silwet L-77 concentrations indicated in antifungal assays.
(0.1% v/v) needs to be added to the induction medium in the
spray inoculation experiments for the effective agroinoculation. Plant protection assays
N. benthamiana plants were grown in the greenhouse at 24 °C
Botrytis cinerea was kindly provided by Prof. A. Molina (CBGP
with a 14 h light-10 h dark photoperiod. For the inoculation
collection, Madrid). Tomato plants (Solanum lycopersicum cultivar
experiments, we used plants at the 4- to 5-leaf stage, without
Marmande, known as the Mediterranean tomato) were cultivated
visible flower buds. Unless indicated in the results, leaves were
in growth chambers at 22 °C with a 16 h light-8 h dark
harvested at 7 dpi or 12 dpi and examined for protein
photoperiod. AfpB protection assays against Botrytis cinerea
production. In storage experiments, leaves were dried in an
infection were performed on detached tomato leaves of 3-week-
incubator at 37 °C for 2 months. Plants accumulating the GFP
old plants on 1% (w/v) agar in water containing 2 lg/mL kinetin.
were photographed at different time points with a Nikon
Leaves were locally infected at two points with conidial suspen-
D7000 digital camera under illumination with a hand-held UV
sions (106 conidia/mL) by applying 20 lL drops containing 10 lM
lamp.
AfpB of purified protein or extracellular fluids. The progression of
Protein analysis and purification symptoms was followed visually. Lesion area was measured by
image analysis using the Fiji ImageJ2 package. We analysed two
Protein samples were prepared by freezing agroinfiltrated leaves
infection points on three leaves from three independent plants in
in liquid nitrogen and then grinding to a fine power with a mortar
three independent experiments.
and pestle. Total soluble proteins were obtained in two volumes
of 50 mM sodium phosphate buffer pH 7.2, 10 mM EDTA, 10 mM
DTT, 0.1% (w/v) SDS and 0.1% (v/v) Triton X-100. Extracts were Acknowledgements
clarified by centrifugation at 16000 g for 15 min at 4 °C. Acidic
This work was supported by grants BIO2017-83184-R, BIO2015-
extraction was used with AFP samples, as these proteins are pH-
68790-C2-1-R and BIO2015-68790-C2-2-R and through the
stable, and can be selectively extracted at low pH. The acidic
‘Severo Ochoa Programme for Centres of Excellence in R&D’
buffer (pH 2.8) contained 84 mM citric acid, 30 mM Na2HPO4,
n
(SEV-2015-0533) from Spanish Ministerio de Ciencia, Innovacio
6 mM ascorbic acid, 0.1% (v/v) 2-mercaptoethanol. For dried
y Universidades (co-financed FEDER funds) and by the CERCA
leaves, total proteins were extracted in 50 mM sodium acetate
Programme/Generalitat de Catalunya. We thank Laia Castillo for
(pH 5.5), 100 mM NaCl, and 10% (v/v) glycerol. Apoplastic fluids
technical support.
were extracted from fresh leaves by vacuum infiltration using
phosphate buffered saline (PBS) buffer supplemented with
0.02% (v/v) Silwet L-77. Protein concentrations were determined Conflict of interest
using the Bio-Rad protein assay and bovine serum albumin (BSA)
The authors declare no conflict of interest.
as standard.
Protein preparations were separated in tricine-SDS-PAGE
(16.5%). Gels were stained with Coomassie blue to detect References
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ª 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd., 17, 1069–1080