Enzyme - Nomenclature, Chemical Nature, and Mechanism
Enzyme - Nomenclature, Chemical Nature, and Mechanism
Enzyme - Nomenclature, Chemical Nature, and Mechanism
Chandigarh 10:30AM–8:30PM
Definition:
An enzyme may be defined as a complex biological catalyst that
is produced by a living organism in its cells to regulate the
various physiological processes of the body. Enzymes
functional outside the living cells are called exoenzymes, e.g.,
enzymes present in digestive juices, lysozyme of tears.
Enzymes functional inside living cells are known as
endozymes, e.g., enzymes of Krebs cycle, enzymes of glycolysis,
etc.
The substance on which an enzyme acts is called the
“substrate” and generally speaking, the enzyme itself is named
after the substrate by adding the suffix, ‘ase’ to that of
substrate. Thus, for example, proteases are a group of enzymes
acting upon proteins, lipases are a group of enzymes acting
upon lipid substances and maltase is the name of enzyme
acting upon maltose.
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Nomenclature:
A scrutiny of the enzyme nomenclature reveals that in many
cases, it is both inconsistent as well as misleading. Also
instances are not lacking where different biochemists gave
different names for the same enzyme. This anomaly has been
removed by the International Commission on Enzymes in its
report in 1961.
The Commission recognised that each enzyme should consist
of: (1) name of the substrate and (2) a word ending in ‘ase’
specifying one kind of catalytic reaction as in succinic dehy-
drogenase, pyruvate transaminase. This nomenclature is
precise and systematic, though in some cases, it is long and
tongue-twisting. It is for this reason the trivial names are
retained with official sanction but only with reference to their
systematic names.
1. Oxidoreductases:
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2. Transferases:
They transfer a group from one molecule to another e.g.,
glutamate-pyruvate transaminase (transfers amino group from
glutamate to pyruvate during synthesis of alanine). The
chemical group transfer does not occur in the Free State.
3. Hydrolases:
They break up large molecules into smaller ones with the help
of hydrogen and hydroxyl groups of water molecules. The
phenomenon is called hydrolysis. Digestive enzymes belong to
this group, e.g., amylase (hydrolysis of starch), sucrase, and
lactase.
4. Lyases:
5. Isomerases:
6. Ligases:
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(iii) Metallo-enzymes:
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If the active site were rigid and specific for a given substrate,
reversibility of the reaction would not occur, because the
structure of the product is different from that of the substrate
and would not fit well.
2. Induced-Fit Theory:
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This idea is now widely known as the induced-fit theory and is
illustrated below. Apparently, the structure of the substrate is
also changed during many cases of induced fit, thus allowing a
more functional enzyme- substrate complex.
Properties of Enzymes:
2. Reversibility:
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The same enzyme facilitates forward and backward movement
of a reaction if only it is possible thermodynamically. A
convincing example is seen in the pathways of respiration and
photosynthesis. The enzymes of glycolysis and pentose
phosphate pathway dissimilate glucose. Some of these enzymes
work in the reverse direction in photosynthesis and build
glucose from carbon dioxide and water.
3. Heat sensitivity:
4. pH-sensitive:
5. Specificity of actions:
6. Enzyme inhibition:
Cyanide, azide and heavy metal like silver, mercury, lead, etc
are some examples of non-competitive inhibitors that combine
with or destroy essential sulfhydryl groups or the metal
component of the enzymes.
1. Enzyme Concentration:
2. Substrate concentration:
V = Vm[S]/Km +[S]
1. Temperature:
2. pH:
3. Hydration:
Coenzymes:
Definition:
(iii) Coenzyme A
(iv) Coenzyme Q
(iv) Cytochromes
(vi) Thiamine pyrophosphate
Structure:
2. Coenzyme Q:
This enzyme is a quinone, known as ubiquinone, and is mainly
found in the mitochondria but also in microsome and cell
nuclei, etc.
Structure:
Function:
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