Bioassay 1
Bioassay 1
Bioassay 1
Structure
5.1 Introduction
Objectives
5.2 Bioassay or Biological Assay
5.2.1 Principle of Bioassay
5.2.2 Components of Bioassay
5.2.3 Role of Statistics in Bioassay
5.3 Types of Bioassays
5.4 Direct Bioassay
5.5 Relative Potency
5.6 Fieller’s Theorem
5.7 Summary
5.8 Solutions/Answers
5.1 INTRODUCTION
In Block 1 of this course, you have studied about the vital statistics which deals
with the methods used to analyse the data pertaining to vital events of the The potency is
populations specially birth, death, marriage, migration, etc., along with the defined as a strength
various methods used for the analysis of these vital events. In this unit, we shall or power of the
discuss bioassay which helps the scientists, pharmacists or doctors to decide stimulus or substance
the amount or dose of a particular medicine or drug which is optimal for administered to the
treatment. It also helps to avoid the dose which may be harmful for a patient. It subject.
may also help agricultural scientists to decide the amount of chemicals or
pesticides, which can be used in the fields to kill the pests and increase the
yield of a crop, etc.
This unit will provide you a general understanding and make you familiar with
bioassay by giving a brief overview of basic concept and components of
bioassay. In Sec. 5.2, we explain about bioassay, components of bioassay and
role of statistics in bioassay. In Sec. 5.3, we briefly discuss about various types
of bioassays. We elaborate on the direct assay in Sec. 5.4. We explore how to
draw a statistically valid conclusion in Sec. 5.5 on the basis of relative potency
of the test preparation with respect to standard preparation, its variance and
fiducial limits. Sec. 5.6 deals with the computation of fiducial limits of relative
potency using Fieller’s theorem.
In the consequent units, you will study about other types of bioassays in detail.
Objectives
After studying this unit, you should be able to:
• define bioassay and its components;
• distinguish between different types of bioassays;
• explain the direct bioassay;
• compute the relative potency and its variance; and 87
Bioassay
• determine the fiducial limits of relative potency.
Stimulus
Subject
Response
Qualitative Assay
Bioassay
Quantal Assay
Preparation A Preparation B
(in mg/kg) (in mg/kg)
2.18 1.40
1.67 1.42
1.80 1.54
Doses 2.04 1.30
1.53 1.12
1.32 1.70
1.98 2.11
1.76 2.16
1.94 1.71
95
Bioassay In the next section, you will learn how to estimate the relative potency of the
test preparation, its variance and fiducial limits.
Ds
ρ= … (2)
Dt
Let d si and d ti are the ith doses of standard and test preparations, respectively. If
we obtain the total K and L observations of the doses of standard and test
preparations, respectively, the following table shows the doses of both
preparations:
Table 2: Doses of standard and test preparations
Standard Test
d s1 d t1
d s2 d t1
Doses . .
. .
. .
d sK d tL
K L
Total d
i =1
si d
i =1
ti
Mean ds dt
1 S2 1 R 2
Var ( R ) = + 2
= + … (9)
dt 2 K L
S R S
dt 2
ss tt
Let R L and R U be the lower and upper fiducial limits of R, respectively, which
are defined as:
R L = R − Var ( R ) …(10a)
R U = R + Var ( R ) …(10b)
We can also calculate the (1 − α ) % fiducial limits based on the t-distribution as:
R U = R + t (K + L −2),α/2 Var(R)
…(11b)
where t (K +L−2),α/2 is a two-tailed t-variate based on ( K + L − 2 ) degrees of
freedom and α % level of significance.
Let us now take up an example to illustrate this method.
Example 2: Let us consider the data given in Example 1 and
(i) Estimate the relative potency of the test preparation.
(ii) Obtain the variance of the relative potency calculated in (i). 97
Bioassay (iii) Construct the 95% fiducial limits for the relative potency.
Solution: (i) For computing the relative potency, we compute dsi2 and d 2ti as
shown in Table 3.
Table 3: Dose tolerances of guinea pigs for two preparations of the drugs
Preparation A Preparation B
d si2 dti2
( dsi ) ( d ti )
2.18 1.40 4.7524 1.9600
1.67 1.42 2.7889 2.0164
1.80 1.54 3.2400 2.3716
Doses 2.04 1.30 4.1616 1.6900
1.53 1.12 2.3409 1.2544
1.32 1.70 1.7424 2.8900
1.98 2.11 3.9204 4.4521
1.76 2.16 3.0976 4.6656
1.94 1.71 3.7636 2.9241
Total 16.22 14.46 29.8078 24.2242
ds 1.80222
R= = = 1.12172
d t 1.60667
1 K 2
Var(d s ) =
K − 1 i =1
d si − K ds2
1
= 29.8078 − 9 (1.80222) 2 = 0.07197
9 −1
1 L 2
Var(d t ) =
L − 1 i =1
d ti − Ld t2
1
= 24.2242 − 9(1.60667) 2 = 0.12398
9 −1
98
Thus, the pooled variance is calculated as:
(9 − 1) 0.07197 + ( 9 − 1) 0.12398 Introduction to Bioassay
S2 = = 0.09797
9+9−2
From equation (9), we compute the variance of the estimated relative
potency as:
S2 1 R2 0.09797 1 (1.12172 )2
Var(R) = 2 K + L = (1.60667) 2 + = 0.00952
dt 9 9
We determine the fiducial limits using equation (10) as:
R L = 1.12172 − 0.00952 = 1.02413
E5) Let ds and dt denote the average doses of the standard and test
preparations, respectively, then relative potency R > 1 indicates that
a) Test preparation is less effective than standard preparation.
b) Test preparation is more effective than standard preparation.
c) Both (i) and (ii).
d) Neither (i) nor (ii).
E6) The doses of three preparations, say, A, B and C are recorded which
cause death of the subjects as a result of a direct assay. The recorded doses are
given in the following table:
Preparation A Preparation B Preparation C
(in ml) (in ml) (in ml)
18.90 16.20 30.60
23.40 11.70 32.22
14.40 12.15 34.65
17.10 10.35 33.30
19.80 13.50 30.60
We assume that ds and dt (mean sample doses of both preparations) are linear
functions of the observations and are normally distributed. Let ds and dt be the
unbiased estimators of Ds and Dt , i.e.,
E ( ds ) = Ds and E ( d t ) = D t … (13)
ds
R= … (14)
dt
According to Fieller’s theorem, the lower and upper fiducial limits of relative
potency are given as:
Sst t S2
R −g Sss − 2RSst + R 2Stt − g Sss − st
Stt dt Stt
(R L , R U ) =
1− g
t 2Stt
where g = , Sss = Var(ds ) , Stt = Var(dt ) , Sst = Cov(ds , dt ) and
d t2
t t ( K + L–2), α/ 2 .
...
(17)
We can expand the expression written inside the square bracket as an
inequality for a quadratic expression given in terms of ρ as:
ax 2 + bx + c = 0
−b b 2 − 4ac
( xL , xU ) = … (19)
2a
We can obtain two estimated values of ρ after solving the quadratic equation
(18) same as defined in equation (19) as:
−2 ( t Sst − ds d t ) 4 ( t 2Sst − ds d t ) − 4 ( d t2 − t 2Stt )( ds2 − t 2Sss )
2 2
(R L , R U ) =
2 ( d t2 − t 2Stt )
=
2 ( d t2 − t 2Stt )
( d d − t 2S ) t t 2S2 − 2S d d + S d 2 + S d 2 − t 2S S
=
s t st st st s t ss t tt s ss tt
… (20)
d t − t Stt
2 2
After dividing both numerator and denominator of equation (20) by d t2 , we
obtain:
Stt d t Stt
= … (22)
1 − g
Hence (1−α)100% lower and upper fiducial limits of the relative potency can be
obtained as:
Sst t Sst2
R −g − Sss − 2RSst + R Stt − g Sss −
2
Stt d t Stt
RL = …(23a)
1− g
Sst t Sst2
R −g + − + − −
2
Sss 2RS st R S tt g ss
S
Stt dt Stt
RU = …(23b)
1− g
t 2Stt
where g = … (24)
d t2
If both preparations are independent, i.e., Sst = 0 , the fiducial limits will be
t
R− Sss + R 2Stt − gSss
dt
RL = …(25a)
1− g
t
R+ Sss + R 2Stt − gSss
dt
RU = …(25b)
1− g
If the value of g is neglected, equation (23) becomes
t
RL = R − Sss − 2RSst + R 2Stt …(26a)
dt
t
RU = R + Sss − 2RSst + R 2Stt …(26b)
dt
The result obtained in equation (26) will be same as given in equation (11)
which is considered as a particular case if Sst = 0 , i.e., when both doses are
independent.
102 In this case, the approximate formula for the variance of R is given as:
1 Introduction to Bioassay
Var(R) = Sss − 2RSst + R 2Stt … (27)
dt2
We obtain the values of Sss and Stt using equation (8) as:
S2 0.09797
Sss = Stt = = = 0.01089
9 9
and Sst = 0 (Since both preparations are independent)
From equation (25), 95% lower and upper fiducial limits of ρ can be computed
as:
2.12
1.12172 − 0.01089 + 1.121722 0.01089 − 0.01895 0.01089
RL = 1.60667
1 − 0.01895
103
Bioassay 2.12
1.12172 − 0.15613
= 1.60667 = 0.93340
1 − 0.01895
2.12
1.12172 + 0.01089 + 1.121722 0.01089 − 0.01895 0.01089
RU = 1.60667
1 − 0.01895
2.12
1.12172 + 0.15613
= 1.60667 = 1.35337
1 − 0.01895
Hence, 95% fiducial limits of ρ are (0.93340, 1.35337)
We can say that 1 mg of Preparation B may be asserted to obtain a potency
lying between approximately 0.93 mg and 1.35 mg of Preparation A.
Note that the computed value of g = 0.1895 is small enough to be practically
negligible, so the theorem gives the limits which are almost same as the
approximate values computed in Example 2.
Before ending this unit, you may like to solve the following exercises for
practice.
5.7 SUMMARY
1) In a bioassay, a stimulus is applied on a subject and a response is
observed. This process is repeated until enough observations have been
made with the desired level of precision.
2) The role of statistician is to validate and provide statistical support by
means of various statistical tools of experimental design as well as
statistical analysis.
3) In direct assays, a specified response can be measured directly for the
doses of standard and test preparations.
4) If d s and d t are mean doses for the standard and test preparations, then
the relative potency (R) of test preparation corresponding to standard
preparations is defined as:
104
Introduction to Bioassay
ds
R=
dt
S2 1 R2
Var ( R ) = K + L
dt 2
R L = R − Var ( R )
R U = R + Var ( R )
R L = R − t (K + L −2),α/2 Var(R)
R U = R + t (K + L −2),α/2 Var(R)
8) The (1– )100% lower and upper fiducial limits of the relative potency
using Fieller’s theorem are obtained as:
Sst t S2
R −g Sss − 2RSst + R 2Stt − g Sss − st
Stt dt Stt
(R L , R U ) =
1− g
t 2Stt
where g = , Sss = Var(ds ) , Stt = Var(dt ) , Sst = Cov(ds , dt ) and
d t2
t t (K + L−2), α/2 .
1
= 5981.0400 − 5 (18.72) 2 = 11.09700
5 −1
For Preparation B
1 5 2
VB =
5 − 1 i =1
d Bi − 5 dB2
1
= 10369.0530 − 5 (12.78) 2 = 4.92075
5 −1
Similarly, for Preparation C
1 5 2 1
VC =
5 − 1 i =1
d Ci − 5 dC2 =
5 − 1
970543.3608 − 5(32.454) 2
106 = 2.48508
The pooled variance of Preparations A and B is calculated as: Introduction to Bioassay
(5 − 1) 11.09700 + ( 5 − 1) 4.92075
S2AB = = 8.00888
5+5−2
The pooled variance of Preparations A and C is obtained as:
(5 − 1) 11.09700 + ( 5 − 1) 2.48508
S2AC = = 6.79104
5+5−2
From equation (9), we compute the variances of the estimated relative
potencies of Preparations B and C as:
8.00888 1 (1.46479 )
2
Var(R B ) = + = 0.03085
(12.78) 2 5 5
8.00888 1 ( 0.57682 )2
Var(R C ) = + = 0.00172
(32.454) 2 5 5
We determine the fiducial limits of relative potencies of Preparations B
and C as:
R BL = 1.46479 − 0.03085 = 1.28915
E7) Option (c) is correct because we determine fiducial limits for the
relative potency ( ρ ) using Filler’s theorem.
E8) From the solution of E6, we have
ds = dA = 18.72 and dt = dB = 12.78
From equation (8), we obtain
S2AB 8.00888
Sss = Stt = = = 1.60178
5 5 107
Bioassay
and Sst = 0 (Since both preparations are independent)
Since α = 0.05 and α / 2 = 0.025 , the tabulated t value at 5% level of
significance with 8 degrees of freedom will be t 8,0.025 = 2.31 .
108