Final Review
Final Review
Dr. D. KALYANI BY
Teaching Fellow, Nithiya M (2019116029)
Division of Biomedical Engineering, Sangamithra B (2019116038)
College of Engineering, Guindy. Surya T.G. (2019116047)
ABSTRACT
Ocimum basilicum commonly known as sweet basil, is a culinary plant from Lamiaceae family
(mint), Asian in origin. Ocimum basilicum plays a key role in many ailments due to its varied
therapeutic properties. This project focus on the phytochemical profiling by GC-MS and FT-IR
analysis of Ocimum basilicum solvent extract. The objective of the project is to find the main
constituent in Ocimum basilicum and its implementation in biomedical applications. Estragole
was found to be the main constituent in Ocimum leaf extract and its application in orthopedic
application in done by 3D slicer and Fusion 360 software. The analysis of Ocimum basilicum
leaf extract in reducing the inflammatory action is studied by Autodock analysis. Further
extensive research has to be done to find its biocompatibility and feasibility of its
implementation in healthcare.
LITERATURE SURVEY
S. AUTHOR NAME OF THE VOLUME NO.,ISSUE INFERENCE
NO JOURNAL NO., ISSN, YEAR OF
PUBLICATION
1. Aswathy Valsan, Preliminary Res. Jr. of Agril. Sci. (Jul- The phytochemical such as alkaloids,
Athulya Bose, Phytochemical Aug 2022) 13(4): 925– steroids, flavonoids, tannins, phenols
Gopika K. N, Screening of 930 and several other aromatic compounds
Amrutha C. S, Indigenous Medicinal of plants serve a defense mechanism.
Anil Kumar A. K, Plants Ocimum
Jayamol K. V and tenuiflorum, Ocimum
Shyam Kumar basilicum, and Ocimum
gratissimum
2. James Redfern, Using Soxhlet Ethanol Journal of microbiology & This article presents information about
Malcolm Extraction to Produce biology education, May the soxhlet extraction method in the
Kinninmonth and and Test Plant 2014, p. 45-46 teaching laboratory.
Dariel Burdass Material (Essential
Oils) for Their
Antimicrobial
Properties
3. Dina Salah Eldin GC-MS analysis, ISSN 2455- Essential oil of O. basilicum leaves showed
Mohammad and antioxidant, antimicrobial 3301 wjpmr, different peaks nineteen Compounds identified.
Hassan S. Khalid cytotoxicity, activities of 2016, 2(6), 08- The Compound with high percentage area was
leaves essential oil Ocimum 13. Eugenol (54.78%).
basilicum and Ocimum
gratissimum l. (lamiaceae)
4. Mohanad Jawad Evaluation of anti-bacterial ISSN 2141- Fourier transform infrared (FT-IR) analyses of O.
Kadhim, Azhar activity and bioactive 250; Vol. 8(6), basilicum revealed the existence of aliphatic
Abdulameer chemical analysis of pp. 127-146, fluoro compounds, alcohols, ethers, carboxlic
Sosa and Imad Ocimum basilicum using June 2016 acids, esters, nitro compounds, alkanes, and
Hadi Hameed Fourier transform infrared phenols.
(FT-IR) and gas
chromatography mass
spectrometry (GC-MS)
techniques
5. Min Sook Jeong, Methodological Scientific Electron spin resonance (ESR) is a useful tool for
Kyeong-Nam considerations of electron Reports , detecting ROS formation.
Yu, Hyun Hoon spin resonance spin trapping 6:26347, DOI:
Chung and Soo techniques for measuring 10.1038/srep26
Jin Park reactive oxygen species 347
generated from metal oxide
nanomaterials
WORK FLOW
Ocimum basilicum (leaf) is collected and dried.
Detection of ROS
Application of leaf extract in orthopedic application using 3D Slicer and Fusion 360
Why Ocimum basilicum?
• Basil possesses strong anti-inflammatory properties which help to fight against various
diseases and disorders.
• The essential oil of Ocimum basilicum contains methyl eugenol and linalool has
bactericidal properties. Essential oils present in leaf to fight inflammation and help to
relieve inflammatory signs and symptoms like swelling, pain and redness of affected part.
• It helps to restore the digestive health of a person. Basil helps to treat indigestion and
other digestive troubles. It restores the pH of the stomach by balancing the acid within.
Ocimum basilicum
Once the level of the solvent reaches the siphon it pours back into the air blow
Experimental setup After 16 hours
Experimental setup After 16 hours
Ethanol separation using water bath Leaf extract
• Qualitative analysis I
It was performed by color’s test which shows the presence of alkaloids, flavonoids, terpenoids, steroids.
• Qualitative analysis II
It was performed by UV-visible spectroscopic analysis, supports the results obtained by Qualitative analysis I.
• FTIR stands for ‘Fourier-transform infrared’ spectroscopy: a technique that can be used to procure an
infrared spectrum of either the emission or absorption of a liquid, solid, or gas sample.
• Principle: When infrared (IR) radiation passes through a sample, some of the radiation is absorbed. The
radiation that passes through the sample is recorded.
SPECIFICATION:
• Sample Required: 1 ml
1. 3339.14 =C–H(methene)
2. 2973.18 CH3(methyl)
3. 2889.29 -C–H (CH3, CH2)
4. 2124.11 -C≡C-(ethyne)
5. 1650.19 -C=O(carbonyl alkene)
6. 1381.67 -C–H (CH3)(methyl alkane)
7. 1325.60 C-O-C(aromatic ether)
8. 1274.61 -C–O; -CH2-(carbonyl)
9. 1085.64 -C–O(carbonyl alkane)
10. 1044.09 -HC=CH-(ethene)
11. 879.42 =CH2(alkene)
12. 801.74 -C–H; -HC=CH-(ethene , methyl)
13. 635.13 unknown
Gas chromatography–mass spectrometry
•Gas chromatography–mass spectrometry (GC-MS) is an analytical method that
combines the features of gas-chromatography and mass spectrometry to identify
different substances within a test sample.
• The following result was obtained, the retention time of the peak 8.288mins which was
maximum single peak obtained under GC-MS.
GC-MS analysis of Ocimum leaf ethanolic extract reveals single strong compound
estragole was found to be maximum contributor by giving a single peak.
Table.3: GC-MS analysis of Ocimum basilicum leaf extract
S.NO RETENTION TIME (mins) COMPOUNDS [9]
1. 6.12 1,1-dichloroethane
2. 7.2 1,2-dichloroethane
3. 8.28 ESTRAGOLE
4. 9.6 ethylene dichloride
5. 10.19 1,2-dichloropropane
6. 10.9 sec-butyl acetate
7. 11.3 iso-butyl acetate
8. 12.8 3-hexanone
9. 13.12 2-ethoxyethanol
10. 13.8 cis-2-hexen-1-ol
11. 14.9 1,4-dichloro-2-butene
12. 15.99 iso-propylbenzene
13. 18.7 methyl benzoate
A
Fig A reveals the standard spectral library whereas B is spectral library for Ocimum basilicum leaf extract.
Table 4: Ionisation table
The ion with the highest intensity (m/z) 148 for estragole is stable and
predominant those ionic peak is taken as 100% and considered as base peak.
CONCLUSION FROM THE GC-MS
• Formula- C10H12O
• Compound- Estragole
• Chemical structure-
• ROS are usually very reactive, but present in low concentration in healthy state.
• ROS elevated during inflammatory reactions.
• Hence drug can be designed to suppress ROS generation by inhibiting anti-
inflammatory protein.
INFLAMMATORY ACTION
• Cytokines modulate the immune response to infection or inflammation and regulate inflammation
itself via a complex network of interactions. However, excessive inflammatory cytokine production
can lead to tissue damage, hemodynamic changes, organ failure.
• Pro-inflammatory proteins :
• Interferon-gamma
• Interleukin-33
• Interleukin-12
• Interferon alpha
DOCKING USING AUTODOCK
The preparation step starts with pdb files of receptor (protein.pdb) and ligand
(ligand.pdb), which are added hydrogens and then saved as RH.pdb & LH.pdb.
3D grid generation
3. Defining the docking parameters and running the docking simulation.
Using commands:
Execution of docking
The protocol is followed for all the four proteins are docked with estragole.
Analysis is done using molecular viewer and discovery studio software.
BONDLENGTH
ATOM ID BONDING TYPE BONDED TO AMINOACID
(Å)
TOTAL
BINDING INHIB TORSIONAL UNBOUND
LIGAND INTERMOLECULAR VANDERWALLS ELECTROSTATIC INTERNAL
CONFORMATION ENERGY CONSTANT ENERGY(kcal/ ENERGY
EFFICIENCY ENERGY (kcal/mol) ENERGY(kcal/mol) ENERGY(kcal/mol) ENERGY
(kcal/mol) (pM) mol) (kcal/mol)
(kcal/mol)
1 -4.26 -0.39 758.51 -5.15 -5.15 0.0 -0.27 0.89 -0.27
BONDLENGTH
ATOM ID BONDING TYPE BONDED TO AMINOACID
(Å)
BONDLENGTH
ATOM ID BONDING TYPE BONDED TO AMINOACID
(Å)
INTERMOLEC TOTAL
BINDING INHIB VANDERWAL ELECTROSTAT TORSIONAL
PROTEINS DOCKED LIGAND ULAR INTERNAL
ENERGY CONSTANT LS ENERGY IC ENERGY ENERGY
WITH ESTRAGOLE EFFICIENCY ENERGY(kcal ENERGY
(kcal/mol) (pM) (kcal/mol) (kcal/mol) (kcal/mol)
/mol) (kcal/mol)
• Estragole with Interferon gamma, interferon alpha-2, interleukin-33 and interleukin-12 has binding energy of -4.09, -
3.23, -4.66 and -2.67 respectively. Interleukin-12 with estragole has the lowest binding energy of -2.67 of other.
Hence interleukin-12 is tightly bounded with estragole which is more reactive to suppress the activity of pro-
inflammatory property of interleukin-12.
• Highly efficient fragment hit makes it easier to optimize the fragment into a drug-like compound. Interleukin-12 has
the highest ligand efficiency and others have sufficiently high ligand efficiency.
• The more hydrogen bonds between protein-ligand, the more stable the protein-ligand interactions. All four proteins
have hydrogen bonding distributed evenly over the surface.
• Hydrophobicity is thought to be one of the primary forces driving the folding of proteins. On average, hydrophobic
residues occur preferentially in the core, whereas polar residues tend to occur at the surface of a folded protein.
Interferon-gamma and interleukin-33 have higher hydrophobicity while other two proteins have sufficiently small
hydrophobicity.
Application of leaf extract in orthopedic application
• 3D Slicer is a free and open source software package for image
analysis and scientific visualization. Slicer's capabilities include: SOFTWARE USED:
Handling DICOM images, Volume renderings, Image segmentation. 3D SLICER
• Fusion 360 is a cloud-based 3D modeling CAD software platform FUSION 360
to create 3D designs, collaborate, manage data, create toolpaths, and
run simulations to validate designs. Fusion 360 is also the tool of
choice for manufacturing, machining, engineering and industrial
design experts.
DIMENSION:
AREA 18354.315 mm^2
LOOP 785.61 mm
LENGTH
Step 3: Add the patch to the Cracked surface
Step 4: Add the material to the patch and modify the properties of Estragole and
hydroxyapatite[11] to it.
PROPERTIES VALUE
Thermal 5.800 E-01
conductivity W/(m.K)
Specific heat 4.1183 J/(g° C)
Thermal expansion 12 µm/ (m.°C)
coefficient
Young’s modulus 6 GPa
Poisson’s ratio 0.27
Shear modulus 5120MPa
Density 0.965 g/cm3
Yield strength 18 MPa
Tensile strength 1.5 MPa
• Screening of biocompatibility of the patch has to be carried to check for its health
care applications.