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R: AcuityView

R software: AcuityView

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9 views4 pages

R: AcuityView

R software: AcuityView

Uploaded by

omr7
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
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Package ‘AcuityView’

October 12, 2022


Title A Package for Displaying Visual Scenes as They May Appear to an
Animal with Lower Acuity
Version 0.1
Date 2017-04-28
Author Eleanor Caves [aut, cre],
Sönke Johnsen [aut]
Maintainer Eleanor Caves <[email protected]>
Description This code provides a simple method for representing a vi-
sual scene as it may be seen by an animal with less acute vision. When using (or for more infor-
mation), please cite the original publication.
Depends R (>= 3.0.0)
Imports imager (>= 0.40.1), fftwtools (>= 0.9-7), plotrix (>= 3.2.3),
tools, grid, grDevices, graphics
License GPL (>= 2)
Encoding UTF-8
LazyData true
RoxygenNote 6.0.1.9000
NeedsCompilation no
Repository CRAN
Date/Publication 2017-05-09 07:10:48 UTC

R topics documented:
AcuityView . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
fft_matrix_shift . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3

Index 4

1
2 AcuityView

AcuityView AcuityView

Description
This function provides a simple method for displaying a visual scene as it may appear to an animal
with lower acuity.

Usage
AcuityView(photo = NULL, distance = 2, realWidth = 2,
eyeResolutionX = 0.2, eyeResolutionY = NULL, plot = T,
output = "test.jpg")

Arguments
photo The photo you wish to alter; if NULL then a pop up window allows you to
navigate to your photo, otherwise include the file path here
distance The distance from the viewer to the object of interest in the image; can be in any
units so long as it is in the same units as RealWidth
realWidth The real width of the entire image; can be in any units as long as it is in the same
units as distance
eyeResolutionX The resolution of the viewer in degrees
eyeResolutionY The resolution of the viewer in the Y direction, if different than ResolutionX;
defaults to NULL, as it is uncommon for this to differ from eyeResolutionX
plot Whether to plot the final image; defaults to T, but if F, the final image will still
be saved to your working directory
output The name of the output file, must be in the format of output="image_name.filetype";
acceptable filetypes are .bmp, .png, or .jpeg

Value
Returns an image in the specified format

Image Format Requirements


Image must be in 3-channel format, either PNG, JPEG or BMP. Note: some PNG files have an alpha
channel that makes them 4-channel images; this will not work with the code. The image must be
3-channel.

Image size
Image must be square with each side a power of 2 pixels. Example: 512x512, 1024 x 1024, 2048 x
2048 pixels
fft_matrix_shift 3

For Linux Users


You may need to install the fftw library in order for the R package "fftwtools" to install and perform
correctly. The FFTW website and install information can be found here: http://www.fftw.org/ This
library can easily be installed on Ubuntu with: apt-get install fftw3-dev

Examples
require(imager)
photo<-system.file('extdata/reef.bmp', package='AcuityView')
reef<-load.image(photo)
AcuityView(photo = reef, distance = 2, realWidth = 2, eyeResolutionX = 2,
eyeResolutionY = NULL, plot = TRUE, output="Example.jpeg")

fft_matrix_shift FFTMatrixShift

Description
This function rearranges the output of the FFT by moving the zero frequency component to the
center

Usage
fft_matrix_shift(input_matrix, dim = -1)

Arguments
input_matrix the output of an FFT
dim -1 gives the correct matrix shift for the AcuityView function
Index

AcuityView, 2

fft_matrix_shift, 3

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