Gao-2012-Increased Expression and Altered Meth
Gao-2012-Increased Expression and Altered Meth
Gao-2012-Increased Expression and Altered Meth
Abstract
Background: The human endogenous retroviral family W, Env(C7), member 1 gene (HERVWE1) is thought to participate in
trophoblast cell fusion, and its expression is diminished in the placentas of singleton intrauterine growth-retarded
pregnancies. However, there is limited information about the role of HERVWE1 in discordant fetal growth in twins. This study
was to compare HERVWE1 gene expression between the placentas of discordant monozygotic twins and to identify its
regulation by methylation.
Methodology/Principal Findings: Fetuses from twenty-one pairs of monozygotic, dichorionic, discordant twins were
marked as ‘‘smaller’’ or ‘‘larger’’ according to birth weight. Placental HERVWE1 mRNA and protein expression profiles were
analyzed using quantitative RT-PCR and immunohistochemistry (IHC) staining. Methylation profiles of the HERVWE1
promoter region were analyzed using a pyrosequencing assay. DNA methyltransferase (DNMT) transcript levels were
analyzed by RT-PCR. 5-methyl cytosine (5-MC) was stained using an immunohistochemical assay. There was a significant
negative correlation between HERVWE1 mRNA levels and birth weight in twins (P,0.01). Whereas the mean methylation
level of the HERVWE1 promoter region was diminished in the smaller group in discordant twins(P,0.01), increased mRNA
and protein levels of HERVWE1 were found in smaller fetuses compared with larger fetuses in discordant twins(P,0.01).
There was no significant difference in 5-MC staining intensity between discordant twins (P.0.05). The DNMT3b3 mRNA
levels in the smaller group were significantly downregulated compared with the larger group in discordant twins(P,0.05),
whereas the DNMT3b7 mRNA levels in the smaller group were significantly upregulated compared with the larger group in
discordant twins(P,0.05).
Conclusions/Significance: In discordant, monozygotic, dichorionic twins, HERVWE1 expression was higher in smaller fetuses
and lower in larger fetuses. Methylation of the HERVWE1 gene promoter region may participate in the regulation of
HERVWE1 gene expression in discordant twin pregnancies.
Citation: Gao Y, He Z, Wang Z, Luo Y, Sun H, et al. (2012) Increased Expression and Altered Methylation of HERVWE1 in the Human Placentas of Smaller Fetuses
from Monozygotic, Dichorionic, Discordant Twins. PLoS ONE 7(3): e33503. doi:10.1371/journal.pone.0033503
Editor: Pierre-Antoine Defossez, Université Paris-Diderot, France
Received September 20, 2011; Accepted February 10, 2012; Published March 21, 2012
Copyright: ß 2012 Gao et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted
use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: No current external funding sources received for this study.
Competing Interests: The authors have declared that no competing interests exist.
* E-mail: [email protected] (QF); [email protected] (SJ)
. These authors contributed equally to this work.
transcript levels, whereas hypomethylation enhanced its transcript capillary electrophoresis assay. Among those pairs, there were 21
levels in placental and several non-placental tissues [6,7]. Aside pairs of discordant twins for whom the birth weight difference was
from the gene-specific promoter region methylation profile, global at least 20%. All 42 infants were enrolled into the larger or smaller
genomic methylation and the key enzymes regulating DNA group by pair according to birth weight. All of these cases were
methylation (DNA methyltransferases, DNMTs) may affect gene managed expectantly without any interventions. In addition, we
expression. In the last five years, HERVWE1 expression has been collected data from 10 cases of singleton pregnancies delivered at
found to be suppressed in IUGR placentas [8,9]. However, 30–36 weeks for the singleton control group,and 24 pairs of
previous research has focused on singleton pregnancies. The concordant monozygotic dichorionic twins delivered at 30–36
evidence in multiple pregnancies remains limited. weeks for the twins control group, for whom the birth weight
Monozygotic twins have identical inherited backgrounds and difference was less than 20%. All the cases included in this study
similar intrauterine circumstances. However, phenotypic discrep- were delivered by cesarean section. All of the patients’ parents or
ancies generally do exist between monozygotic twins [10,11]. For guardians were informed about the following research data
example, birth weight discordance, which is defined as an inter- collection. Consent was signed prior to enrollment. This study
twin birth weight difference of greater than 20%, is one abnormal was approved by the Sun Yat-sen University Institutional Review
twin fetal growth pattern [12,13]. An unbalanced placental blood Board.
supply caused by vessel anastomosis is one of the most important
pathogeneses leading to weight discordance in monozygotic, Sample collection
monochorionic twins [14,15]. However, this cannot explain the Within 15 minutes after delivery, placental tissue from around
discordance in monozygotic, dichorionic twins as these twins share the individual insertion region of the umbilical cord was collected.
the same DNA sequence and similar circumstances, and there are The placental tissue was excised from inside the placental lobules,
seldom communicating branch vessels in the placenta. Unequal avoiding both the maternal surface and the amniotic membrane.
placental sharing has been identified in some discordant weight Three 262 cm tissue samples were excised and washed 3 times in
cases due to a lack of anastomoses [16]. However, the details of sterilized, ice-cold saline to eliminate any blood. One piece of
this molecular mechanism remain unclear. tissue was placed in TRIzol solution for RNA isolation. The
Some researchers have studied the phenotypic differences second piece of tissue was placed in a cryotube, which was then
between adult monozygotic twins and found that epigenetic deep frozen in liquid nitrogen overnight and transferred to a
modification is one of the most important causes [17–20]. 280uC freezer for storage prior to DNA isolation. The third piece
However, most of these studies focused on adult diseases, such of tissue was placed in a 10% formalin solution overnight and
as psychiatric disorders [11,21,22], multiple sclerosis [20,23], and embedded in paraffin for future immunohistochemical staining.
systemic lupus erythematosus [24], and the study specimens were
peripheral blood or epithelial cells. Few studies have examined
RNA/DNA extraction and conversion
intrauterine epigenetic modification in the placenta of discordant,
RNA isolation was performed using TRIzol (Invitrogen, Cat.
monozygotic twins. Moreover, Fraga and coworkers pointed out
No. 15596-018, Carlsbad, CA, USA) and the phenol-chloroform
that it takes a long time to accumulate significant changes in
method. The RNA was treated with Ambion DNA-free DNase
epigenetic modification [25]. It is still unclear whether epigenetic
treatment and removal reagents (Applied Biosystems, Part
regulation affects fetal growth discordance during early life.
No. AM1906, Austin, TX, USA). The RNA was reverse
In this study, we investigated whether differential expression of
transcribed to cDNA using a High Capacity RNA-to-cDNA kit
HERVWE1 and/or methylation of its promoter region were
(Applied Biosystems, Part No. 4387406, Austin, TX, USA). The
related to differences in the birth weight of twins, using gene
cDNA was stored in a 220uC freezer until use in the real-time
expression and methylation analyses to examine placentas from
PCR assay.
monozygotic, dichorionic, discordant twins. In addition, we
DNA was extracted using the phenol-chloroform method.
hypothesized that the key enzymes that regulate DNA methylation
Bisulfite conversion was achieved with an EpiTect Bisulfite Kit
(DNMTs) contribute to the alterative methylation profile of the
(Qiagen, Cat No 59104, Valencia, CA, USA). Bisulfite-treated
HERVWE1 promoter region in monozygotic, dichorionic, discor-
DNA was stored in a 220uC freezer until use in the
dant twins. As far as we are aware, this study is the first to use
pyrosequencing assay.
placenta samples from monozygotic, dichorionic twins to study
HERVWE1. Our findings may increase our understanding of the
role of the placenta in maintaining normal fetal growth in twin Zygosity identification using a capillary electrophoresis
pregnancies. assay
Genomic DNA was amplified with PowerPlex 16 (Promega, Cat
Material and Methods No. DC 6531, Madison, WI, USA) in order to detect 15
autosomal short tandem repeat (STR) loci in addition to the
Case enrollment gender determination marker amelogenin. Multiplex PCR was
All of the data for the twin pregnancies were collected at the performed using 1 ml of template DNA in a 10 ml volume that
First Affiliated Hospital of Sun Yat-Sen University, China, from included 1 ml of 106 GeneAmp PCR Gold Buffer, 1 ml of 106
July 2003 to December 2009. All intrauterine fetal deaths, IUGR, Primer Pair Mix, and 0.3 ml of AmpliTaq Gold DNA polymerase
twin-twin transfusion syndromes (TTTS), and infants delivered (1.5 U) (Applied Biosystems, Cat No. 4338856, Carlsbad, CA,
before 26 gestational weeks were excluded from the study. USA). The PCR cycling conditions were 95uC for 11 minutes;
Chorionicity was determined by a pathology exam after delivery. 96uC for 2 minutes; 10 cycles of 94uC for 1 minute, 60uC for
The total number of dichorionic twin pregnancies was 336. 1 minute, and 70uC for 1.5 minutes; 22 cycles of 90uC for
Among these cases, 134 pairs of different-sex twins were excluded 1 minute, 60uC for 1 minute, and 70uC for 1.5 minutes; and a
due to dizygosity. Zygosity identification was applied in the cases final extension at 60uC for 30 minutes. The PCR products were
of 202 pairs of same-sex twins. A total of 56 pairs were identified as separated and detected by capillary electrophoresis using an ABI
monozygotic twins based on zygosity identification using a 3100 Genetic Analyzer (Applied Biosystem, Cat No. 4359571,
Carlsbad, CA, USA) according to the manufacturer’s instructions. reaction contained 6 ml 26 SYBR green master mixture, 1 ml
Allele calls were made with GeneMapper ID v3.2 software forward primer, 1 ml reverse primer, 1 ml cDNA template, and
(Applied Biosystem, Cat No. 4338856, Carlsbad, CA, USA). If all 3 ml H2O. Every reaction was repeated in quadruplicate. The
genotypes of the 16 loci were identical, then the pair was identified thermal cycling conditions consisted of 50uC for 2 minutes; 95uC
as monozygotic. If the genotypes of any loci were different, then for 6 minutes; and 40 cycles of 95uC for 30 seconds, 45uC for
the pair was identified as dizygotic. Appendix Figure S1 shows the 30 seconds, and 60uC for 1 minute. The quantitative gene
16 STR loci in one pair of monozygotic twins. expression results were analyzed with sequence detection system
software (SDS v.2.3). The details of the real-time primers for
Real-time PCR HERVWE1, HCS, DNMTs, GAPDH, b-actin, and PCNA are shown
To determine the transcriptional profile of HERVWE1, in Appendix Table S1.
quantitative real-time PCR was used to compare HERVWE1
mRNA levels between growth discordant twins, with three internal Immunohistochemical staining (IHC)
reference genes, glyceraldehyde-3-phosphate dehydrogenase Blocks from ten pairs of discordant twins, ten pairs of
(GAPDH),beta actin (b-actin), and proliferating cell nuclear antigen concordant twins, and ten singleton cases were available to apply
(PCNA).. The HCS gene located downstream of HERVWE1 was the HERVWE1 IHC staining. The same ten pairs of discordant
identified as a factor reflecting placental function. The HCS twins and ten singleton cases applied the 5-MC staining. The slices
mRNA level was measured as well. The concordant twins groups were stained under the same condition in HERVWE1 IHC
and singleton group served as normal controls. We also explored staining and 5-MC staining respectively.
the transcription of three DNMTs (DNMT1, DNMT3a, and
DNMT3b) and seven DNMT3b isoforms (DNMT3b1-7) in discor- HERVWE1 protein expression
dant twins and singleton control group using real-time PCR. Placental tissue was embedded in paraffin. Each slice was
Briefly, cDNA was quantitatively analyzed by real-time PCR deparaffinized using xylene and gradient ethanol. Antigen retrieval
using a 7900HT fast real-time PCR system (Applied Biosystems, was performed in boiling 10 mM citrate buffer for 10 minutes.
Part No. 4329001, Carlsbad, CA, USA). PCR was performed in The slices were then treated with 2 N hydrochloric acid (HCl) at
384-well plates using SYBR Green PCR Master Mix (Applied 37uC for 30 minutes. Endo-peroxidase blocking was accomplished
Biosystems, Part No. 4309155, Carlsbad, CA, USA). Each with 3% H2O2 in methanol for 20 minutes. Blocking of non-
specific binding was performed with 1% gelatin. The samples were Appendix Figure S2 is a schematic diagram showing the CG sites
incubated at 4uC overnight with a 1:100 dilution of affinity-purified in the HERVWE1 promoter region. To analyze the methylation
rabbit polyclonal anti-human endogenous retrovirus IgG antibody levels of the 5 CG sites, we used a pyrosequencing assay. The
(GeneTex Inc. Cat No. GTX70327, Irvine, CA, USA). A goat anti- bisulfite-converted target DNA sequence was amplified using biotin-
rabbit secondary antibody conjugated to biotin (Vector Laboratories, labeled primers, as shown in Appendix Table S1. Each PCR
Cat No. BA-1000, Burlingame, CA, USA) at a dilution of 1:200 was reaction contained 3 ml 106 PCR buffer, 1.8 ml 25 mM/L MgCl2,
applied for 30 minutes. The sections were then incubated with a 0.6 ml 10 mM dNTP (Fermentas, Cat No. R0191, Glen Burnie,
Vectastain Elite ABC-peroxidase kit (Vector laboratories, Cat MD, USA), 0.15 ml Hotstar Taq DNA polymerase (Qiagen, Cat
No. BA-1000, Burlingame, CA, USA) for 60 minutes. Staining was No. 203203, Valencia, CA, USA), 0.6 ml forward primer, 0.6 ml
detected with a substrate solution of diaminobenzidine tetrahy- reverse primer, 1 ml DNA template, and 22.25 ml H2O. The
drochloride (DAB) (Sigma Aldrich, Cat. No D5905-50, St. Louis, thermal cycling conditions consisted of 95uC for 15 minutes; 45
MO, USA). Counterstaining was performed with hematoxylin. cycles of 95uC for 30 seconds, 58uC for 30 seconds, and 72uC for
30 seconds; 72uC for 10 minutes; and 4uC until completion. The
Global methylation staining for 5-methyl cytosine (5-MC) PCR products were sent to EpigenDx, Inc. (Worcester, MA, USA)
Tissue slices were incubated overnight in a 1:200 dilution of for pyrosequencing. All new data had been deposited in GenBank.
sheep anti-5-Methyl Cytosine primary antibody (Capralogics, Inc., Because pyrosequencing can read only 50–100 bp for each accurate
Cat No. P00704, Hardwick, MA, USA) followed by a 1:200 pyrosequencing primer, we used two pyrosequencing primers to
analyze the five CpG sites. The pyrograms are shown in Appendix
dilution of biotinylated goat anti-sheep IgG (Vector Laboratories,
Figure S3. The methylation level of each CG site was calculated as
Cat No. BA-6000, Burlingame, CA, USA) as the secondary
the C/(C+T) peak height ratio. Unmethylated and in vitro
antibody. The other steps were performed as described for the
methylated DNA were mixed at specified ratios to serve as controls.
HERVWE1 staining.
Statistical analysis
Picture acquisition and processing
All of the data were analyzed using IBM SPSS v. 19.0 statistical
Images were captured using a Carl Zeiss microscope imaging
software (SPSS Inc., Chicago, IL, USA). Clinical information was
system (Carl Zeiss, Cat. No. AxioVert 200 M, Thornwood, NY,
presented as the frequencies or means 6 standard deviations. The
US). Based on the proportion of positively stained cells and their
comparisons between larger and smaller fetuses in twin pairs were
degree of intensity, three random high-power fields (10640) from
performed using an independent sample t-test. The differences
each section were analyzed using AxioVs40LE digital image
among the control groups, the smaller or larger discordant twin
processing software (Carl Zeiss, AxioVision version 4.5.0.0, groups were analyzed using one-way ANOVA. The correlations
Thornwood, NY, US). The scoring system used to assess the between methylation levels and gene expression were evaluated using
trophoblast profile was as follows: negative (score = 0) = no positive Spearman’s correlation analysis. The semi-quantitative IHC data
staining, weakly positive (score = 1) = weakly positive staining seen were analyzed using ANOVA with the least significant difference
within the structure, positive (score = 2) = positive staining seen procedure (LSD) and post hoc multiple comparisons analysis. To
within the structure, and strongly positive (score = 3) = strong remove the effect of gestational age, analysis of covariance was
staining signal within the trophoblast cell. The proportion of cells applied to evaluate the difference of gene expression in each group. A
in each staining intensity category was multiplied by the P value,0.05 was considered significant for all tests.
trophoblast profile score to calculate the overall score.
Results
Pyrosequencing assay
The pyrosequencing assay was applied in all of the discordant Clinical characteristics
twins and singleton control cases. There were 5 CG sites from There were 21 pairs of monozygotic, dichorionic, discordant
2336 bp to 2192 bp in the HERVWE1 59LTR+U3 region. twins, 24 pairs of monozygotic, dichorionic, concordant twins, and
Table 2. HERVWE1 and HCS mRNA levels among the groups (GAPDH, b-actin, and PCNA as internal reference genes respectively).
HERVWE1
GAPDH as control 1.0360.18 1.9160.31{ 0.9660.22 1.0460.29 1.0060.09
b-actin as control 0.9860.16 1.6260.29{ 1.0960.22 1.1360.26 1.0060.17
PCNA as control 0.9960.26 1.1160.27 1.0960.22 1.1260.27 1.0060.13
HCS
GAPDH as control 1.1260.33 2.1760.36{ 1.1360.32 1.1560.30 1.0060.25
b-actin as control 1.1860.29 1.7360.35{ 1.1260.31 1.1760.28 1.0060.24
PCNA as control 0.9760.34 1.0760.28 1.0860.31 1.0960.25 1.0060.24
The values shown indicate the relative quantitation of HERVWE1 and HCS mRNAs, which were standardized to GAPDH,b-actin,and PCNA respectively, and normalized to
the singleton control group.
The data are shown as the means 6 standard deviations.
{P,0.01 vs. other four groups.
doi:10.1371/journal.pone.0033503.t002
10 singleton pregnancies enrolled in our study. The clinical distribution among the discordant twins, concordant twins, and
characteristics are summarized in Table 1. There were no singleton groups. The birth weight of smaller fetuses in discordant
differences in maternal age, race distribution, maternal body mass group was the lightest among the five groups (P,0.01). The birth
index (BMI), maternal parity, mode of delivery, delivery weight difference in discordant twins was significantly larger than
gestational age, incidence of maternal complication, or gender that in concordant twins (P,0.05).
Figure 1. The correlation between HERVWE1 transcript levels and birth weight. The scatterplots showed the correlation between the
HERVWE1 transcript profile and the fetal birth weight in all five groups. (A) Using GAPDH as internal reference gene, the HERVWE1 transcript level was
significant negatively correlated with the fetal birth weight (spearman correlation coefficient 20.287, P,0.01). (B) Using b-actin as internal reference
gene, the HERVWE1 transcript level was significant negatively correlated with the fetal birth weight (spearman correlation coefficient 20.271,
P,0.01).
doi:10.1371/journal.pone.0033503.g001
Figure 3. The correlation between the HERVWE1 staining score and the HERVWE1 mRNA level. The scatterplots showed the correlation
between the HERVWE1 transcript profile and the HERVWE1 staining score in all five groups. Using GAPDH as internal reference gene, the HERVWE1
transcript level was significant positively correlated with the HERVWE1 staining score (spearman correlation coefficient 0.229, P,0.05).
doi:10.1371/journal.pone.0033503.g003
The methylation profile of HERVWE1 transcriptional When the CG sites were sorted by methylation level, the order was
regulation region 3rd, 1st, 4th, 2nd and 5th for both discordant twin groups.
Pyrosequencing assay was applied in 21 pairs of discordant Spearman correlation analysis was applied to study the
twins and 10 singletons. The methylation levels of the 1st and 2nd correlation between HERVWE1 transcript level and methylation
CG sites and the average methylation levels of the five CG sites profile. While the GAPDH as internal reference gene, the
were lower in smaller discordant twin group compared with the HERVWE1 transcript level was negatively correlated with the
larger discordant twin group (P,0.01), and the singleton HERVWE1 promoter region the 1st(Rs = 20.434, P,0.01),
group(P,0.01). However, no differences were detected at the 2nd(Rs = 20.377, P,0.01),and mean(Rs = 20.510, P,0.01) meth-
3rd, 4th and 5th CG sites (P.0.05), as summarized in Figure 4. ylation levels (Figure 5). While the b-actin as internal reference
Figure 4. The methylation profile of the HERVWE1 promoter region, as determined by the pyrosequencing assay. There were 5 CG
sites in HERVWE1 promoter region. The pyrosequencing assay was applied to investigate the five CG sites methylation profile. The bar chart showed
the five CG sites methylation level. All of the CG sites methylation ratios were lower than 40%. The most hypermethylated site was the 3rd CG site.
The most hypomethylated site was the 5th CG site. The black, darkgrey, and lightgrey bars were represented the smaller discordant twin group,
larger discordant twin group, and singleton group respectively. The 1st, 2nd, and mean methlation level in smaller discordant twin group were lower
than that in larger discordant twin group (P,0.01) and singleton group (P,0.01).
doi:10.1371/journal.pone.0033503.g004
Figure 5. The correlation between HERVWE1 promoter region methylation level and HERVWE1 transcript levels. The scatterplots
showed the correlation between the HERVWE1 transcript profile and the HERVWE1 promoter region methylation level in discordant twin groups and
singleton group. Using GAPDH as internal reference gene, the HERVWE1 transcript level was significant negatively correlated with the HERVWE1
promoter region methylation level (A–C). Using b-actin as internal reference gene, the HERVWE1 transcript level was significant negatively correlated
with the HERVWE1 promoter region methylation level (D–F).
doi:10.1371/journal.pone.0033503.g005
gene, the HERVWE1 transcript level was also negatively correlated transcript level and the HERVWE1 promoter region methylation
with the HERVWE1 promoter region the 1st(Rs = 20.308, profile.
P,0.05), 2nd(Rs = 20.517, P,0.01),and mean(Rs = 20.428, We also compared the DNMTs transcriptional profiles among
P,0.01) methylation level (Figure 5). discordant twin group and singleton group. The results based on
GAPDH and b-actin as internal reference gene were consistent.
Global methylation (5-MC staining) There were no differences between the larger twin and the smaller
We used a semi-quantitative analysis method to score the slice twin in discordant group for DNMT1, DNMT3a, or DNMT3b
density. The staining was located in the nuclei of both of the (P.0.05). The smaller twin in discordant group expressed less
trophoblast and stroma cells. The positive nuclei were brown, and DNMT3b3 (P,0.05) and more DNMT3b7 (P,0.05) than the larger
the negative nuclei were blue after counterstaining with hema- twin in discordant group and singleton group. Figure 8 shows
toxylin. Comparing the 5-MC staining densities of the larger twin DNMTs transcriptional profiles based on GAPDH and b-actin as
in discordant group, the smaller twin in discordant group and the internal reference gene.
singleton group samples revealed no significant differences in
overall score among the three groups (P.0.05) (Table 4). Discussion
Figure 6 shows pictures of individual cases. For the smaller twins
in discordant group, we noticed the staining in the trophoblast Our data showed that HERVWE1 was more highly expressed in
cells (marked as S or C in Figure 6) was lighter than that seen in smaller twins than larger twins in discordant group. The
the stromal cells (marked as ST). However, the larger twin in HERVWE1 transcript level was negatively correlated with birth
discorant group and singleton group had no such distinction. weight. The methylation level of HERVWE1 promoter-region was
Therefore, we counted only the trophoblast cells using a semi- decreased in the smaller discordant twin group and increased in
quantitative analysis method, and we found that the smaller twin the larger discordant twin group, also well correlated with
in discordant group had a lower 5-MC staining intensity in HERVWE1 transcript level. We found that DNMT3b3 transcript
trophoblast cells than the larger twin in discordant group and the level was positively correlated with the HERVWE1 promoter
singleton group (P,0.01), but no differences between the larger region methylation profile. The DNMT3b3 mRNA level was
twin in discordant group and the singleton group downregulated, and the DNMT3b7 mRNA level was upregulated
(P.0.05)(Table 4). in the smaller discordant twin group.
Table 4. 5-MC staining scores for the discordant twin and singleton group.
Figure 7. The correlation between DNMT3b3 transcript levels and HERVWE1 promoter region methylation level. The scatterplots
showed the correlation between the HERVWE1 promoter region methylation level and the DNMTs transcript profile in discordant twin groups and
singleton group. Using GAPDH as internal reference gene, DNMT3b3 transcript level was positively correlated with the HERVWE1 promoter region
methylation level (A–C). Using b-actin as internal reference gene, DNMT3b3 transcript level was positively correlated with the HERVWE1 promoter
region the 1st CG site methylation level (D).
doi:10.1371/journal.pone.0033503.g007
HERVWE1 expression trend during the whole twin pregnancy One of our study’s merits is that we have found evidence for a
season is still unclear, and we need to enroll more twin cases in differential change in cases of growth discrepancy in twins. This is
future study. difficult to study in a singleton case. This novel observation has
Figure 8. DNMTs transcript levels among discordant twins and singleton group. The values shown indicated the relative quantitation of
the DNMT mRNAs, which were standardized to GAPDH (A) and b-actin (B), normalized to the singleton control group. The DNMT 3b3 mRNA
decreased and DNMT 3b7 mRNA increased in smaller discordant twin group compared with the larger discordant twin group and singleton group.
doi:10.1371/journal.pone.0033503.g008
enriched our understanding of the molecular mechanisms involved in regulating gene expression in the placenta during twin
in the pathogenesis of fetal growth disorders. development. A meaningful methylation difference definitely
existed between the monozygotic twins during the intrauterine
Methylation alteration in monozygotic twins stage and have critical influence on fetal or placental development.
Our next important finding is the identification of a particular
alteration in methylation in the HERVWE1 promoter region in DNMT regulation in discordant twins
discordant, monozygotic twins, with methylation being decreased DNMTs may act as key enzymes in a complicated methylation
in the smaller twins. Previous studies in discordant, monozygotic regulation mechanism. In present study, we found that methyla-
twins also found epigenetic difference between the discordant tion profile of HERVWE1 transcriptional regulation region was
phenotypes. However, most of these studies were limited to adult correlated with the alteration of one of the DNMT3b’s isoform,
disease, such as in schizophrenia and multiple sclerosis [23]. DNMT3b3, indicating that some factors may control HERVWE1
Limited study was conducted in fetal stage. Our study used a expression through the modulation of methyltransferase enzymes.
unique study population to explore intrauterine growth differenc- The DNMT3b gene has 7 variants, the expression of which
es. Only dichorionic twins were enrolled, thereby avoiding the depends on different post-transcription spliced patterns [35]. Due
effect of vascular anastomosis between placentas. We found that to the lack of an intact catalytic domain, both 3b3 and 3b7 have
methylation of the HERVWE1 promoter region was decreased in limited catalytic activity. Although some researchers have found
the smaller twins but without according changes in global level. It that DNMT3b variants have diverse expression profiles in cancer
indicated that locus-specific methylation played an important role tissues [36], the research on these variants and their function is
very limited [35,37,38]. DNMT3b3 is a more commonly expressed adjacent to an upstream regulatory element (URE) of composite
variant, but its catalytic activity is controversial. We found that origin. The URE contains a trophoblast-specific enhancer (TSE,
DNMT3b3 transcript levels were lower in the smaller discordant light gray), which confers a high level of expression and placental
twin group. This result was consistent with the lower methylation tropism. TSE and U3 are considered the key methylation and
levels in the smaller discordant twin group. Without a complete transcriptional regulation control regions. These two regions
catalytic domain, DNMT3b7 theoretically has no enzymatic together are approximately 346 bp in length. There are 7 CG sites
activity. Furthermore, it can competitively bind to the enzyme’s in all, two of which are in the TSE; the other five are in the 59LTR
binding site on DNA. This mechanism might explain our finding U3. The CAP transcription initiation site is located at the 59 end of
that DNMT3b7 levels increased in the hypomethylated smaller the R region. Taking the CAP transcription initiation site as the
discordant twin group. This result suggests that DNMT3b7 acts as zero point, the 7 CG sites are located at 2336 bp, 2307 bp,
a negative regulator of methylation. Overall, the DNMT3b 2246 bp, 2208 bp, 2192 bp, 264 bp, and 243 bp. Our
variants’ tissue expression patterns and functions remain largely methylation study was focused on the first five CG sites. The
unknown. Although our study showed an outline of the expression target CpG dinucleotides are marked with vertical bars and circles.
of DNMTs in the placentas of discordant twins, and its potential (TIF)
contributions to methylation regulation in HERVWE1, the
underneath mechanism is still unclear. Further experiments Appendix Figure S3 Pyrograms. Two pyrograms of the same
should focus on normal placental tissue or trophoblast cell lines sample. Because pyrosequencing can read through only 50–
to explore the relationship between these variants and their 100 bp for each accurate pyrosequencing primer, we used two
functions in fetal growth and placental development. pyrosequencing primers to analyze the five CpG sites. The first
pyrosequencing primer was used to read the following sequence:
Conclusion TTT TGG GGY GGG TTT TTT TTT TGG GAT GAG GGT
We used discordant, monozygotic, dichorionic twins to study AAA AYG TTT GGA GAT ATA GTA ATT ATT TTG. The
HERVWE1 expression in the placenta and explore its potential second pyrosequencing primer was used to read the following
impact on fetal growth. We found that HERVWE1 transcript sequence: TAG TTG GAT TTT TTA GGT YGA TTA AGA
expression was negatively correlated with infant birth weight in ATT TTT AAG TTT AGT TGG GAA GGT GAT TAY GTT
discordant twins. HERVWE1 expression was increased in smaller TAT TTT TAA ATA YGG GGT TTG TAA TTT AGT TTA
discordant twins to levels higher than those seen in normal-growth TAT TT. S3A shows the results using the first pyrosequencing
twins and singletons. CG-site methylation in the HERVWE1 primer. The read out sequence was TTTTGGGGYGGGTTTT-
promoter region maybe a regulatory mechanism for suppressing TTTTTTGGGATGAGGGTAAAAYGTTTGG. This was com-
its expression in the monozygotic placenta. DNMT3b3 transcript pletely consistent with the targeted sequence. For the first CG site,
was positively correlated with methylation status in the HERVWE1 the C/(C+T) peak ratio was 24%. This result indicates that 24% of
promoter region and its mechanism is worth to be investigated in CG sites were methylated overall. Similarly, for the second CG
future study. site, the methylated cytosine fraction was 3% in total. S3B shows
the results using the second pyrosequencing primer. The read out
Supporting Information sequence was TAGTTGGATTTTTTAGGTYGATTAAGAAT-
TTTTAAGTTTAGTTGGGAAGGTGATTAYGTTTATTTT-
Appendix Figure S1 Gene maps of zygosity identification TAAATAYGGGGTTT. For the three CG sites, the methylated
assay. There are 15 autosomal short tandem repeat loci and 1 cytosine levels were 28%, 22% and 18%, respectively.
gender locus. The name of each locus is marked above the allele. (TIF)
Multiple alleles are possible at each locus. Each wave presents one
detectable allele. The serial number of each allele is labeled under Appendix Table S1 Primer Sequences. The detailed primer
each wave. If all of the 16 loci are identical, then the two infants sequences for real-time PCR and pyrosequencing assay.
are recognized as monozygotic twins. If any of the genotypes of the (DOC)
16 loci are different, then the two infants are dizygotic twins. S1A
and S1B show two individual infants’ genotypes. They were Acknowledgments
confirmed as monozygotic twins with identical genotypes at each
We thank all of the laboratory staff at the Hoskins Center, Mercer
locus.
University, for their instruction and assistance.
(TIF)
Appendix Figure S2 A schematic diagram of the Author Contributions
HERVWE1 promoter region CG sites. The HERVWE1
Conceived and designed the experiments: QF SWJ. Performed the
gene is located at 7q21.2. This is an LTR (long terminal repeat)-
experiments: YG ZMH HYS MCL. Analyzed the data: YZ. Contributed
element-rich region. Each LTR includes U3 (white), R (dark grey), reagents/materials/analysis tools: ZLW YML LHH. Wrote the paper: YG
and U5 (black) regions, in that order. The HERVWE1 ZMH.
transcriptional regulatory element is in the 59LTR U3 region
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